-output_ab_scheme AHo_Scheme # Tried with and without line below #-input_ab_scheme AHo_Scheme -add_graft_log_to_pdb -ignore_zero_occupancy false -ignore_unrecognized_res -pdb_comments -ex1 -ex2 -use_input_sc -other_pose_to_scorefile -flip_HNQ -delete_old_poses