core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 129
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 130
core.io.pdb.file_data: Trying 'ALA' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 131
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 132
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 133
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 134
core.io.pdb.file_data: Trying 'CYS' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Match: 'CYS'; missing 1 coordinates
core.io.pdb.file_data: Residue 135
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 136
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 137
core.io.pdb.file_data: Trying 'ASN' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 138
core.io.pdb.file_data: Trying 'ASN' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 139
core.io.pdb.file_data: Trying 'PHE' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PHE:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PHE:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PHE:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 140
core.io.pdb.file_data: Trying 'TYR' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 141
core.io.pdb.file_data: Trying 'PRO' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Match: 'PRO'; missing 1 coordinates
core.io.pdb.file_data: Residue 142
core.io.pdb.file_data: Trying 'ARG' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ARG:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ARG:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ARG:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 143
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 144
core.io.pdb.file_data: Trying 'ALA' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 145
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 146
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 147
core.io.pdb.file_data: Trying 'GLN' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 148
core.io.pdb.file_data: Trying 'TRP' ResidueType
core.io.pdb.file_data: Trying 'TRP:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'TRP:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TRP:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TRP:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TRP:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TRP:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 149
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 150
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 151
core.io.pdb.file_data: Trying 'ASP' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 152
core.io.pdb.file_data: Trying 'ASN' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 153
core.io.pdb.file_data: Trying 'ALA' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 154
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 155
core.io.pdb.file_data: Trying 'GLN' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 156
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 157
core.io.pdb.file_data: Trying 'GLY' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 158
core.io.pdb.file_data: Trying 'ASN' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 159
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 160
core.io.pdb.file_data: Trying 'GLN' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 161
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 162
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 163
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 164
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 165
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 166
core.io.pdb.file_data: Trying 'GLN' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 167
core.io.pdb.file_data: Trying 'ASP' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 168
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 169
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 170
core.io.pdb.file_data: Trying 'ASP' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 171
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 172
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 173
core.io.pdb.file_data: Trying 'TYR' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 174
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 175
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 176
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 177
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 178
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 179
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 180
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 181
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 182
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 183
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 184
core.io.pdb.file_data: Trying 'ALA' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 185
core.io.pdb.file_data: Trying 'ASP' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASP:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 186
core.io.pdb.file_data: Trying 'TYR' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 187
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 188
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 189
core.io.pdb.file_data: Trying 'HIS' ResidueType
core.io.pdb.file_data: Trying 'HIS_D' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 190
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 191
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 192
core.io.pdb.file_data: Trying 'TYR' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:sulfated' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:protein_cutpoint_upper:protein_cutpoint_lower:diiodinated' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:sulfated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'TYR:diiodinated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 193
core.io.pdb.file_data: Trying 'ALA' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ALA:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 194
core.io.pdb.file_data: Trying 'CYS' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Match: 'CYS'; missing 1 coordinates
core.io.pdb.file_data: Residue 195
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 196
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 197
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 198
core.io.pdb.file_data: Trying 'HIS' ResidueType
core.io.pdb.file_data: Trying 'HIS_D' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'HIS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'HIS_D:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 199
core.io.pdb.file_data: Trying 'GLN' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 200
core.io.pdb.file_data: Trying 'GLY' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 201
core.io.pdb.file_data: Trying 'LEU' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LEU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 202
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 203
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 204
core.io.pdb.file_data: Trying 'PRO' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower:pro_hydroxylated_case1' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_lower:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:protein_cutpoint_upper:protein_cutpoint_lower:pro_hydroxylated_case2' ResidueType
core.io.pdb.file_data: Trying 'PRO:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case1:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PRO:pro_hydroxylated_case2:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Match: 'PRO'; missing 1 coordinates
core.io.pdb.file_data: Residue 205
core.io.pdb.file_data: Trying 'VAL' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'VAL:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 206
core.io.pdb.file_data: Trying 'THR' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'THR:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 207
core.io.pdb.file_data: Trying 'LYS' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:monomethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:dimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:lys_trimethylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:protein_cutpoint_upper:protein_cutpoint_lower:acetylated' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:monomethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:dimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:lys_trimethylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'LYS:acetylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 208
core.io.pdb.file_data: Trying 'SER' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'SER:phosphorylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 209
core.io.pdb.file_data: Trying 'PHE' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PHE:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'PHE:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PHE:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'PHE:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 210
core.io.pdb.file_data: Trying 'ASN' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ASN:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 211
core.io.pdb.file_data: Trying 'ARG' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ARG:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'ARG:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ARG:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'ARG:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 212
core.io.pdb.file_data: Trying 'GLY' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLY:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 213
core.io.pdb.file_data: Trying 'GLU' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:protein_cutpoint_upper:protein_cutpoint_lower:carboxylated' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'GLU:carboxylated:MethylatedCtermProteinFull:AcetylatedNtermProteinFull' ResidueType
core.io.pdb.file_data: Residue 214
core.io.pdb.file_data: Trying 'CYS:CtermProteinFull' ResidueType
core.io.pdb.file_data: Trying 'CYS:CtermProteinFull:protein_cutpoint_upper' ResidueType
core.io.pdb.file_data: Trying 'CYS:CtermProteinFull:acetylated' ResidueType
core.io.pdb.file_data: Trying 'CYS:CtermProteinFull:protein_cutpoint_upper:acetylated' ResidueType
core.io.pdb.file_data: Match: 'CYS:CtermProteinFull'; missing 1 coordinates
core.conformation.Conformation: Found disulfide between residues 23 88
core.conformation.Conformation: current variant for 23 CYS
core.conformation.Conformation: current variant for 88 CYS
core.conformation.Conformation: current variant for 23 CYD
core.conformation.Conformation: current variant for 88 CYD
core.conformation.Conformation: Found disulfide between residues 134 194
core.conformation.Conformation: current variant for 134 CYS
core.conformation.Conformation: current variant for 194 CYS
core.conformation.Conformation: current variant for 134 CYD
core.conformation.Conformation: current variant for 194 CYD
core.import_pose.import_pose: original fold tree: FOLD_TREE  EDGE 1 214 -1 
core.import_pose.import_pose: 
core.import_pose.import_pose: new fold tree FOLD_TREE  EDGE 1 214 -1 
core.import_pose.import_pose: 
core.pack.task: Packer task: initialize from command line() 
core.import_pose.import_pose: build_pose... Ok.
protocols.comparative_modeling.ThreadingJobInputter: ThreadingJobInputter::fill_jobs
protocols.comparative_modeling.ThreadingJobInputter: creating job for alignment 4KMT_LC on template 4KMT_
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.FileJobOutputter: FileJobOutputter ctor
protocols.jd2.PDBJobOutputter: Using PDBJobOutputter (base class) for JobDistributor
protocols.jd2.JobDistributor: Starting job S_4KMT_LC_0001
protocols.comparative_modeling.ThreadingJobInputter: ThreadingJobInputter::pose_from_job
core.pose: one_letter: DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
core.pose: seq_in: DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
core.pose: sequence in pose: DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
core.pose: annotated seq: D[ASP:NtermProteinFull]IQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC[CYS:CtermProteinFull]
protocols.comparative_modeling.threading: query sequence         : DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: query sequence         :             C226S_LC       1 DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: aligned_template       :              4KMT_LC       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: template_sequence (aln):    4KMT_LC_align_seq       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: template_sequence (pdb):      4KMT_LC_pdb_seq       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: Query:                C226S_LC       1 DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: Template:              4KMT_LC       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: Original Mapping:1-->2
protocols.comparative_modeling.threading: id.SequenceMapping 1 --> 1
protocols.comparative_modeling.threading: id.SequenceMapping 2 --> 2
protocols.comparative_modeling.threading: id.SequenceMapping 3 --> 3
protocols.comparative_modeling.threading: id.SequenceMapping 4 --> 4
protocols.comparative_modeling.threading: id.SequenceMapping 5 --> 5
protocols.comparative_modeling.threading: id.SequenceMapping 6 --> 6
protocols.comparative_modeling.threading: id.SequenceMapping 7 --> 7
protocols.comparative_modeling.threading: id.SequenceMapping 8 --> 8
protocols.comparative_modeling.threading: id.SequenceMapping 9 --> 9
protocols.comparative_modeling.threading: id.SequenceMapping 10 --> 10
protocols.comparative_modeling.threading: id.SequenceMapping 11 --> 11
protocols.comparative_modeling.threading: id.SequenceMapping 12 --> 12
protocols.comparative_modeling.threading: id.SequenceMapping 13 --> 13
protocols.comparative_modeling.threading: id.SequenceMapping 14 --> 14
protocols.comparative_modeling.threading: id.SequenceMapping 15 --> 15
protocols.comparative_modeling.threading: id.SequenceMapping 16 --> 16
protocols.comparative_modeling.threading: id.SequenceMapping 17 --> 17
protocols.comparative_modeling.threading: id.SequenceMapping 18 --> 18
protocols.comparative_modeling.threading: id.SequenceMapping 19 --> 19
protocols.comparative_modeling.threading: id.SequenceMapping 20 --> 20
protocols.comparative_modeling.threading: id.SequenceMapping 21 --> 21
protocols.comparative_modeling.threading: id.SequenceMapping 22 --> 22
protocols.comparative_modeling.threading: id.SequenceMapping 23 --> 23
protocols.comparative_modeling.threading: id.SequenceMapping 24 --> 24
protocols.comparative_modeling.threading: id.SequenceMapping 25 --> 25
protocols.comparative_modeling.threading: id.SequenceMapping 26 --> 26
protocols.comparative_modeling.threading: id.SequenceMapping 27 --> 27
protocols.comparative_modeling.threading: id.SequenceMapping 28 --> 28
protocols.comparative_modeling.threading: id.SequenceMapping 29 --> 29
protocols.comparative_modeling.threading: id.SequenceMapping 30 --> 30
protocols.comparative_modeling.threading: id.SequenceMapping 31 --> 31
protocols.comparative_modeling.threading: id.SequenceMapping 32 --> 32
protocols.comparative_modeling.threading: id.SequenceMapping 33 --> 33
protocols.comparative_modeling.threading: id.SequenceMapping 34 --> 34
protocols.comparative_modeling.threading: id.SequenceMapping 35 --> 35
protocols.comparative_modeling.threading: id.SequenceMapping 36 --> 36
protocols.comparative_modeling.threading: id.SequenceMapping 37 --> 37
protocols.comparative_modeling.threading: id.SequenceMapping 38 --> 38
protocols.comparative_modeling.threading: id.SequenceMapping 39 --> 39
protocols.comparative_modeling.threading: id.SequenceMapping 40 --> 40
protocols.comparative_modeling.threading: id.SequenceMapping 41 --> 41
protocols.comparative_modeling.threading: id.SequenceMapping 42 --> 42
protocols.comparative_modeling.threading: id.SequenceMapping 43 --> 43
protocols.comparative_modeling.threading: id.SequenceMapping 44 --> 44
protocols.comparative_modeling.threading: id.SequenceMapping 45 --> 45
protocols.comparative_modeling.threading: id.SequenceMapping 46 --> 46
protocols.comparative_modeling.threading: id.SequenceMapping 47 --> 47
protocols.comparative_modeling.threading: id.SequenceMapping 48 --> 48
protocols.comparative_modeling.threading: id.SequenceMapping 49 --> 49
protocols.comparative_modeling.threading: id.SequenceMapping 50 --> 50
protocols.comparative_modeling.threading: id.SequenceMapping 51 --> 51
protocols.comparative_modeling.threading: id.SequenceMapping 52 --> 52
protocols.comparative_modeling.threading: id.SequenceMapping 53 --> 53
protocols.comparative_modeling.threading: id.SequenceMapping 54 --> 54
protocols.comparative_modeling.threading: id.SequenceMapping 55 --> 55
protocols.comparative_modeling.threading: id.SequenceMapping 56 --> 56
protocols.comparative_modeling.threading: id.SequenceMapping 57 --> 57
protocols.comparative_modeling.threading: id.SequenceMapping 58 --> 58
protocols.comparative_modeling.threading: id.SequenceMapping 59 --> 59
protocols.comparative_modeling.threading: id.SequenceMapping 60 --> 60
protocols.comparative_modeling.threading: id.SequenceMapping 61 --> 61
protocols.comparative_modeling.threading: id.SequenceMapping 62 --> 62
protocols.comparative_modeling.threading: id.SequenceMapping 63 --> 63
protocols.comparative_modeling.threading: id.SequenceMapping 64 --> 64
protocols.comparative_modeling.threading: id.SequenceMapping 65 --> 65
protocols.comparative_modeling.threading: id.SequenceMapping 66 --> 66
protocols.comparative_modeling.threading: id.SequenceMapping 67 --> 67
protocols.comparative_modeling.threading: id.SequenceMapping 68 --> 68
protocols.comparative_modeling.threading: id.SequenceMapping 69 --> 69
protocols.comparative_modeling.threading: id.SequenceMapping 70 --> 70
protocols.comparative_modeling.threading: id.SequenceMapping 71 --> 71
protocols.comparative_modeling.threading: id.SequenceMapping 72 --> 72
protocols.comparative_modeling.threading: id.SequenceMapping 73 --> 73
protocols.comparative_modeling.threading: id.SequenceMapping 74 --> 74
protocols.comparative_modeling.threading: id.SequenceMapping 75 --> 75
protocols.comparative_modeling.threading: id.SequenceMapping 76 --> 76
protocols.comparative_modeling.threading: id.SequenceMapping 77 --> 77
protocols.comparative_modeling.threading: id.SequenceMapping 78 --> 78
protocols.comparative_modeling.threading: id.SequenceMapping 79 --> 79
protocols.comparative_modeling.threading: id.SequenceMapping 80 --> 80
protocols.comparative_modeling.threading: id.SequenceMapping 81 --> 81
protocols.comparative_modeling.threading: id.SequenceMapping 82 --> 82
protocols.comparative_modeling.threading: id.SequenceMapping 83 --> 83
protocols.comparative_modeling.threading: id.SequenceMapping 84 --> 84
protocols.comparative_modeling.threading: id.SequenceMapping 85 --> 85
protocols.comparative_modeling.threading: id.SequenceMapping 86 --> 86
protocols.comparative_modeling.threading: id.SequenceMapping 87 --> 87
protocols.comparative_modeling.threading: id.SequenceMapping 88 --> 88
protocols.comparative_modeling.threading: id.SequenceMapping 89 --> 89
protocols.comparative_modeling.threading: id.SequenceMapping 90 --> 90
protocols.comparative_modeling.threading: id.SequenceMapping 91 --> 91
protocols.comparative_modeling.threading: id.SequenceMapping 92 --> 92
protocols.comparative_modeling.threading: id.SequenceMapping 93 --> 93
protocols.comparative_modeling.threading: id.SequenceMapping 94 --> 94
protocols.comparative_modeling.threading: id.SequenceMapping 95 --> 95
protocols.comparative_modeling.threading: id.SequenceMapping 96 --> 96
protocols.comparative_modeling.threading: id.SequenceMapping 97 --> 97
protocols.comparative_modeling.threading: id.SequenceMapping 98 --> 98
protocols.comparative_modeling.threading: id.SequenceMapping 99 --> 99
protocols.comparative_modeling.threading: id.SequenceMapping 100 --> 100
protocols.comparative_modeling.threading: id.SequenceMapping 101 --> 101
protocols.comparative_modeling.threading: id.SequenceMapping 102 --> 102
protocols.comparative_modeling.threading: id.SequenceMapping 103 --> 103
protocols.comparative_modeling.threading: id.SequenceMapping 104 --> 104
protocols.comparative_modeling.threading: id.SequenceMapping 105 --> 105
protocols.comparative_modeling.threading: id.SequenceMapping 106 --> 106
protocols.comparative_modeling.threading: id.SequenceMapping 107 --> 107
protocols.comparative_modeling.threading: id.SequenceMapping 108 --> 108
protocols.comparative_modeling.threading: id.SequenceMapping 109 --> 109
protocols.comparative_modeling.threading: id.SequenceMapping 110 --> 110
protocols.comparative_modeling.threading: id.SequenceMapping 111 --> 111
protocols.comparative_modeling.threading: id.SequenceMapping 112 --> 112
protocols.comparative_modeling.threading: id.SequenceMapping 113 --> 113
protocols.comparative_modeling.threading: id.SequenceMapping 114 --> 114
protocols.comparative_modeling.threading: id.SequenceMapping 115 --> 115
protocols.comparative_modeling.threading: id.SequenceMapping 116 --> 116
protocols.comparative_modeling.threading: id.SequenceMapping 117 --> 117
protocols.comparative_modeling.threading: id.SequenceMapping 118 --> 118
protocols.comparative_modeling.threading: id.SequenceMapping 119 --> 119
protocols.comparative_modeling.threading: id.SequenceMapping 120 --> 120
protocols.comparative_modeling.threading: id.SequenceMapping 121 --> 121
protocols.comparative_modeling.threading: id.SequenceMapping 122 --> 122
protocols.comparative_modeling.threading: id.SequenceMapping 123 --> 123
protocols.comparative_modeling.threading: id.SequenceMapping 124 --> 124
protocols.comparative_modeling.threading: id.SequenceMapping 125 --> 125
protocols.comparative_modeling.threading: id.SequenceMapping 126 --> 126
protocols.comparative_modeling.threading: id.SequenceMapping 127 --> 127
protocols.comparative_modeling.threading: id.SequenceMapping 128 --> 128
protocols.comparative_modeling.threading: id.SequenceMapping 129 --> 129
protocols.comparative_modeling.threading: id.SequenceMapping 130 --> 130
protocols.comparative_modeling.threading: id.SequenceMapping 131 --> 131
protocols.comparative_modeling.threading: id.SequenceMapping 132 --> 132
protocols.comparative_modeling.threading: id.SequenceMapping 133 --> 133
protocols.comparative_modeling.threading: id.SequenceMapping 134 --> 134
protocols.comparative_modeling.threading: id.SequenceMapping 135 --> 135
protocols.comparative_modeling.threading: id.SequenceMapping 136 --> 136
protocols.comparative_modeling.threading: id.SequenceMapping 137 --> 137
protocols.comparative_modeling.threading: id.SequenceMapping 138 --> 138
protocols.comparative_modeling.threading: id.SequenceMapping 139 --> 139
protocols.comparative_modeling.threading: id.SequenceMapping 140 --> 140
protocols.comparative_modeling.threading: id.SequenceMapping 141 --> 141
protocols.comparative_modeling.threading: id.SequenceMapping 142 --> 142
protocols.comparative_modeling.threading: id.SequenceMapping 143 --> 143
protocols.comparative_modeling.threading: id.SequenceMapping 144 --> 144
protocols.comparative_modeling.threading: id.SequenceMapping 145 --> 145
protocols.comparative_modeling.threading: id.SequenceMapping 146 --> 146
protocols.comparative_modeling.threading: id.SequenceMapping 147 --> 147
protocols.comparative_modeling.threading: id.SequenceMapping 148 --> 148
protocols.comparative_modeling.threading: id.SequenceMapping 149 --> 149
protocols.comparative_modeling.threading: id.SequenceMapping 150 --> 150
protocols.comparative_modeling.threading: id.SequenceMapping 151 --> 151
protocols.comparative_modeling.threading: id.SequenceMapping 152 --> 152
protocols.comparative_modeling.threading: id.SequenceMapping 153 --> 153
protocols.comparative_modeling.threading: id.SequenceMapping 154 --> 154
protocols.comparative_modeling.threading: id.SequenceMapping 155 --> 155
protocols.comparative_modeling.threading: id.SequenceMapping 156 --> 156
protocols.comparative_modeling.threading: id.SequenceMapping 157 --> 157
protocols.comparative_modeling.threading: id.SequenceMapping 158 --> 158
protocols.comparative_modeling.threading: id.SequenceMapping 159 --> 159
protocols.comparative_modeling.threading: id.SequenceMapping 160 --> 160
protocols.comparative_modeling.threading: id.SequenceMapping 161 --> 161
protocols.comparative_modeling.threading: id.SequenceMapping 162 --> 162
protocols.comparative_modeling.threading: id.SequenceMapping 163 --> 163
protocols.comparative_modeling.threading: id.SequenceMapping 164 --> 164
protocols.comparative_modeling.threading: id.SequenceMapping 165 --> 165
protocols.comparative_modeling.threading: id.SequenceMapping 166 --> 166
protocols.comparative_modeling.threading: id.SequenceMapping 167 --> 167
protocols.comparative_modeling.threading: id.SequenceMapping 168 --> 168
protocols.comparative_modeling.threading: id.SequenceMapping 169 --> 169
protocols.comparative_modeling.threading: id.SequenceMapping 170 --> 170
protocols.comparative_modeling.threading: id.SequenceMapping 171 --> 171
protocols.comparative_modeling.threading: id.SequenceMapping 172 --> 172
protocols.comparative_modeling.threading: id.SequenceMapping 173 --> 173
protocols.comparative_modeling.threading: id.SequenceMapping 174 --> 174
protocols.comparative_modeling.threading: id.SequenceMapping 175 --> 175
protocols.comparative_modeling.threading: id.SequenceMapping 176 --> 176
protocols.comparative_modeling.threading: id.SequenceMapping 177 --> 177
protocols.comparative_modeling.threading: id.SequenceMapping 178 --> 178
protocols.comparative_modeling.threading: id.SequenceMapping 179 --> 179
protocols.comparative_modeling.threading: id.SequenceMapping 180 --> 180
protocols.comparative_modeling.threading: id.SequenceMapping 181 --> 181
protocols.comparative_modeling.threading: id.SequenceMapping 182 --> 182
protocols.comparative_modeling.threading: id.SequenceMapping 183 --> 183
protocols.comparative_modeling.threading: id.SequenceMapping 184 --> 184
protocols.comparative_modeling.threading: id.SequenceMapping 185 --> 185
protocols.comparative_modeling.threading: id.SequenceMapping 186 --> 186
protocols.comparative_modeling.threading: id.SequenceMapping 187 --> 187
protocols.comparative_modeling.threading: id.SequenceMapping 188 --> 188
protocols.comparative_modeling.threading: id.SequenceMapping 189 --> 189
protocols.comparative_modeling.threading: id.SequenceMapping 190 --> 190
protocols.comparative_modeling.threading: id.SequenceMapping 191 --> 191
protocols.comparative_modeling.threading: id.SequenceMapping 192 --> 192
protocols.comparative_modeling.threading: id.SequenceMapping 193 --> 193
protocols.comparative_modeling.threading: id.SequenceMapping 194 --> 194
protocols.comparative_modeling.threading: id.SequenceMapping 195 --> 195
protocols.comparative_modeling.threading: id.SequenceMapping 196 --> 196
protocols.comparative_modeling.threading: id.SequenceMapping 197 --> 197
protocols.comparative_modeling.threading: id.SequenceMapping 198 --> 198
protocols.comparative_modeling.threading: id.SequenceMapping 199 --> 199
protocols.comparative_modeling.threading: id.SequenceMapping 200 --> 200
protocols.comparative_modeling.threading: id.SequenceMapping 201 --> 201
protocols.comparative_modeling.threading: id.SequenceMapping 202 --> 202
protocols.comparative_modeling.threading: id.SequenceMapping 203 --> 203
protocols.comparative_modeling.threading: id.SequenceMapping 204 --> 204
protocols.comparative_modeling.threading: id.SequenceMapping 205 --> 205
protocols.comparative_modeling.threading: id.SequenceMapping 206 --> 206
protocols.comparative_modeling.threading: id.SequenceMapping 207 --> 207
protocols.comparative_modeling.threading: id.SequenceMapping 208 --> 208
protocols.comparative_modeling.threading: id.SequenceMapping 209 --> 209
protocols.comparative_modeling.threading: id.SequenceMapping 210 --> 210
protocols.comparative_modeling.threading: id.SequenceMapping 211 --> 211
protocols.comparative_modeling.threading: id.SequenceMapping 212 --> 212
protocols.comparative_modeling.threading: id.SequenceMapping 213 --> 213
protocols.comparative_modeling.threading: id.SequenceMapping 214 --> 214
protocols.comparative_modeling.threading: Transitive Map
protocols.comparative_modeling.threading: id.SequenceMapping 1 --> 1
protocols.comparative_modeling.threading: id.SequenceMapping 2 --> 2
protocols.comparative_modeling.threading: id.SequenceMapping 3 --> 3
protocols.comparative_modeling.threading: id.SequenceMapping 4 --> 4
protocols.comparative_modeling.threading: id.SequenceMapping 5 --> 5
protocols.comparative_modeling.threading: id.SequenceMapping 6 --> 6
protocols.comparative_modeling.threading: id.SequenceMapping 7 --> 7
protocols.comparative_modeling.threading: id.SequenceMapping 8 --> 8
protocols.comparative_modeling.threading: id.SequenceMapping 9 --> 9
protocols.comparative_modeling.threading: id.SequenceMapping 10 --> 10
protocols.comparative_modeling.threading: id.SequenceMapping 11 --> 11
protocols.comparative_modeling.threading: id.SequenceMapping 12 --> 12
protocols.comparative_modeling.threading: id.SequenceMapping 13 --> 13
protocols.comparative_modeling.threading: id.SequenceMapping 14 --> 14
protocols.comparative_modeling.threading: id.SequenceMapping 15 --> 15
protocols.comparative_modeling.threading: id.SequenceMapping 16 --> 16
protocols.comparative_modeling.threading: id.SequenceMapping 17 --> 17
protocols.comparative_modeling.threading: id.SequenceMapping 18 --> 18
protocols.comparative_modeling.threading: id.SequenceMapping 19 --> 19
protocols.comparative_modeling.threading: id.SequenceMapping 20 --> 20
protocols.comparative_modeling.threading: id.SequenceMapping 21 --> 21
protocols.comparative_modeling.threading: id.SequenceMapping 22 --> 22
protocols.comparative_modeling.threading: id.SequenceMapping 23 --> 23
protocols.comparative_modeling.threading: id.SequenceMapping 24 --> 24
protocols.comparative_modeling.threading: id.SequenceMapping 25 --> 25
protocols.comparative_modeling.threading: id.SequenceMapping 26 --> 26
protocols.comparative_modeling.threading: id.SequenceMapping 27 --> 27
protocols.comparative_modeling.threading: id.SequenceMapping 28 --> 28
protocols.comparative_modeling.threading: id.SequenceMapping 29 --> 29
protocols.comparative_modeling.threading: id.SequenceMapping 30 --> 30
protocols.comparative_modeling.threading: id.SequenceMapping 31 --> 31
protocols.comparative_modeling.threading: id.SequenceMapping 32 --> 32
protocols.comparative_modeling.threading: id.SequenceMapping 33 --> 33
protocols.comparative_modeling.threading: id.SequenceMapping 34 --> 34
protocols.comparative_modeling.threading: id.SequenceMapping 35 --> 35
protocols.comparative_modeling.threading: id.SequenceMapping 36 --> 36
protocols.comparative_modeling.threading: id.SequenceMapping 37 --> 37
protocols.comparative_modeling.threading: id.SequenceMapping 38 --> 38
protocols.comparative_modeling.threading: id.SequenceMapping 39 --> 39
protocols.comparative_modeling.threading: id.SequenceMapping 40 --> 40
protocols.comparative_modeling.threading: id.SequenceMapping 41 --> 41
protocols.comparative_modeling.threading: id.SequenceMapping 42 --> 42
protocols.comparative_modeling.threading: id.SequenceMapping 43 --> 43
protocols.comparative_modeling.threading: id.SequenceMapping 44 --> 44
protocols.comparative_modeling.threading: id.SequenceMapping 45 --> 45
protocols.comparative_modeling.threading: id.SequenceMapping 46 --> 46
protocols.comparative_modeling.threading: id.SequenceMapping 47 --> 47
protocols.comparative_modeling.threading: id.SequenceMapping 48 --> 48
protocols.comparative_modeling.threading: id.SequenceMapping 49 --> 49
protocols.comparative_modeling.threading: id.SequenceMapping 50 --> 50
protocols.comparative_modeling.threading: id.SequenceMapping 51 --> 51
protocols.comparative_modeling.threading: id.SequenceMapping 52 --> 52
protocols.comparative_modeling.threading: id.SequenceMapping 53 --> 53
protocols.comparative_modeling.threading: id.SequenceMapping 54 --> 54
protocols.comparative_modeling.threading: id.SequenceMapping 55 --> 55
protocols.comparative_modeling.threading: id.SequenceMapping 56 --> 56
protocols.comparative_modeling.threading: id.SequenceMapping 57 --> 57
protocols.comparative_modeling.threading: id.SequenceMapping 58 --> 58
protocols.comparative_modeling.threading: id.SequenceMapping 59 --> 59
protocols.comparative_modeling.threading: id.SequenceMapping 60 --> 60
protocols.comparative_modeling.threading: id.SequenceMapping 61 --> 61
protocols.comparative_modeling.threading: id.SequenceMapping 62 --> 62
protocols.comparative_modeling.threading: id.SequenceMapping 63 --> 63
protocols.comparative_modeling.threading: id.SequenceMapping 64 --> 64
protocols.comparative_modeling.threading: id.SequenceMapping 65 --> 65
protocols.comparative_modeling.threading: id.SequenceMapping 66 --> 66
protocols.comparative_modeling.threading: id.SequenceMapping 67 --> 67
protocols.comparative_modeling.threading: id.SequenceMapping 68 --> 68
protocols.comparative_modeling.threading: id.SequenceMapping 69 --> 69
protocols.comparative_modeling.threading: id.SequenceMapping 70 --> 70
protocols.comparative_modeling.threading: id.SequenceMapping 71 --> 71
protocols.comparative_modeling.threading: id.SequenceMapping 72 --> 72
protocols.comparative_modeling.threading: id.SequenceMapping 73 --> 73
protocols.comparative_modeling.threading: id.SequenceMapping 74 --> 74
protocols.comparative_modeling.threading: id.SequenceMapping 75 --> 75
protocols.comparative_modeling.threading: id.SequenceMapping 76 --> 76
protocols.comparative_modeling.threading: id.SequenceMapping 77 --> 77
protocols.comparative_modeling.threading: id.SequenceMapping 78 --> 78
protocols.comparative_modeling.threading: id.SequenceMapping 79 --> 79
protocols.comparative_modeling.threading: id.SequenceMapping 80 --> 80
protocols.comparative_modeling.threading: id.SequenceMapping 81 --> 81
protocols.comparative_modeling.threading: id.SequenceMapping 82 --> 82
protocols.comparative_modeling.threading: id.SequenceMapping 83 --> 83
protocols.comparative_modeling.threading: id.SequenceMapping 84 --> 84
protocols.comparative_modeling.threading: id.SequenceMapping 85 --> 85
protocols.comparative_modeling.threading: id.SequenceMapping 86 --> 86
protocols.comparative_modeling.threading: id.SequenceMapping 87 --> 87
protocols.comparative_modeling.threading: id.SequenceMapping 88 --> 88
protocols.comparative_modeling.threading: id.SequenceMapping 89 --> 89
protocols.comparative_modeling.threading: id.SequenceMapping 90 --> 90
protocols.comparative_modeling.threading: id.SequenceMapping 91 --> 91
protocols.comparative_modeling.threading: id.SequenceMapping 92 --> 92
protocols.comparative_modeling.threading: id.SequenceMapping 93 --> 93
protocols.comparative_modeling.threading: id.SequenceMapping 94 --> 94
protocols.comparative_modeling.threading: id.SequenceMapping 95 --> 95
protocols.comparative_modeling.threading: id.SequenceMapping 96 --> 96
protocols.comparative_modeling.threading: id.SequenceMapping 97 --> 97
protocols.comparative_modeling.threading: id.SequenceMapping 98 --> 98
protocols.comparative_modeling.threading: id.SequenceMapping 99 --> 99
protocols.comparative_modeling.threading: id.SequenceMapping 100 --> 100
protocols.comparative_modeling.threading: id.SequenceMapping 101 --> 101
protocols.comparative_modeling.threading: id.SequenceMapping 102 --> 102
protocols.comparative_modeling.threading: id.SequenceMapping 103 --> 103
protocols.comparative_modeling.threading: id.SequenceMapping 104 --> 104
protocols.comparative_modeling.threading: id.SequenceMapping 105 --> 105
protocols.comparative_modeling.threading: id.SequenceMapping 106 --> 106
protocols.comparative_modeling.threading: id.SequenceMapping 107 --> 107
protocols.comparative_modeling.threading: id.SequenceMapping 108 --> 108
protocols.comparative_modeling.threading: id.SequenceMapping 109 --> 109
protocols.comparative_modeling.threading: id.SequenceMapping 110 --> 110
protocols.comparative_modeling.threading: id.SequenceMapping 111 --> 111
protocols.comparative_modeling.threading: id.SequenceMapping 112 --> 112
protocols.comparative_modeling.threading: id.SequenceMapping 113 --> 113
protocols.comparative_modeling.threading: id.SequenceMapping 114 --> 114
protocols.comparative_modeling.threading: id.SequenceMapping 115 --> 115
protocols.comparative_modeling.threading: id.SequenceMapping 116 --> 116
protocols.comparative_modeling.threading: id.SequenceMapping 117 --> 117
protocols.comparative_modeling.threading: id.SequenceMapping 118 --> 118
protocols.comparative_modeling.threading: id.SequenceMapping 119 --> 119
protocols.comparative_modeling.threading: id.SequenceMapping 120 --> 120
protocols.comparative_modeling.threading: id.SequenceMapping 121 --> 121
protocols.comparative_modeling.threading: id.SequenceMapping 122 --> 122
protocols.comparative_modeling.threading: id.SequenceMapping 123 --> 123
protocols.comparative_modeling.threading: id.SequenceMapping 124 --> 124
protocols.comparative_modeling.threading: id.SequenceMapping 125 --> 125
protocols.comparative_modeling.threading: id.SequenceMapping 126 --> 126
protocols.comparative_modeling.threading: id.SequenceMapping 127 --> 127
protocols.comparative_modeling.threading: id.SequenceMapping 128 --> 128
protocols.comparative_modeling.threading: id.SequenceMapping 129 --> 129
protocols.comparative_modeling.threading: id.SequenceMapping 130 --> 130
protocols.comparative_modeling.threading: id.SequenceMapping 131 --> 131
protocols.comparative_modeling.threading: id.SequenceMapping 132 --> 132
protocols.comparative_modeling.threading: id.SequenceMapping 133 --> 133
protocols.comparative_modeling.threading: id.SequenceMapping 134 --> 134
protocols.comparative_modeling.threading: id.SequenceMapping 135 --> 135
protocols.comparative_modeling.threading: id.SequenceMapping 136 --> 136
protocols.comparative_modeling.threading: id.SequenceMapping 137 --> 137
protocols.comparative_modeling.threading: id.SequenceMapping 138 --> 138
protocols.comparative_modeling.threading: id.SequenceMapping 139 --> 139
protocols.comparative_modeling.threading: id.SequenceMapping 140 --> 140
protocols.comparative_modeling.threading: id.SequenceMapping 141 --> 141
protocols.comparative_modeling.threading: id.SequenceMapping 142 --> 142
protocols.comparative_modeling.threading: id.SequenceMapping 143 --> 143
protocols.comparative_modeling.threading: id.SequenceMapping 144 --> 144
protocols.comparative_modeling.threading: id.SequenceMapping 145 --> 145
protocols.comparative_modeling.threading: id.SequenceMapping 146 --> 146
protocols.comparative_modeling.threading: id.SequenceMapping 147 --> 147
protocols.comparative_modeling.threading: id.SequenceMapping 148 --> 148
protocols.comparative_modeling.threading: id.SequenceMapping 149 --> 149
protocols.comparative_modeling.threading: id.SequenceMapping 150 --> 150
protocols.comparative_modeling.threading: id.SequenceMapping 151 --> 151
protocols.comparative_modeling.threading: id.SequenceMapping 152 --> 152
protocols.comparative_modeling.threading: id.SequenceMapping 153 --> 153
protocols.comparative_modeling.threading: id.SequenceMapping 154 --> 154
protocols.comparative_modeling.threading: id.SequenceMapping 155 --> 155
protocols.comparative_modeling.threading: id.SequenceMapping 156 --> 156
protocols.comparative_modeling.threading: id.SequenceMapping 157 --> 157
protocols.comparative_modeling.threading: id.SequenceMapping 158 --> 158
protocols.comparative_modeling.threading: id.SequenceMapping 159 --> 159
protocols.comparative_modeling.threading: id.SequenceMapping 160 --> 160
protocols.comparative_modeling.threading: id.SequenceMapping 161 --> 161
protocols.comparative_modeling.threading: id.SequenceMapping 162 --> 162
protocols.comparative_modeling.threading: id.SequenceMapping 163 --> 163
protocols.comparative_modeling.threading: id.SequenceMapping 164 --> 164
protocols.comparative_modeling.threading: id.SequenceMapping 165 --> 165
protocols.comparative_modeling.threading: id.SequenceMapping 166 --> 166
protocols.comparative_modeling.threading: id.SequenceMapping 167 --> 167
protocols.comparative_modeling.threading: id.SequenceMapping 168 --> 168
protocols.comparative_modeling.threading: id.SequenceMapping 169 --> 169
protocols.comparative_modeling.threading: id.SequenceMapping 170 --> 170
protocols.comparative_modeling.threading: id.SequenceMapping 171 --> 171
protocols.comparative_modeling.threading: id.SequenceMapping 172 --> 172
protocols.comparative_modeling.threading: id.SequenceMapping 173 --> 173
protocols.comparative_modeling.threading: id.SequenceMapping 174 --> 174
protocols.comparative_modeling.threading: id.SequenceMapping 175 --> 175
protocols.comparative_modeling.threading: id.SequenceMapping 176 --> 176
protocols.comparative_modeling.threading: id.SequenceMapping 177 --> 177
protocols.comparative_modeling.threading: id.SequenceMapping 178 --> 178
protocols.comparative_modeling.threading: id.SequenceMapping 179 --> 179
protocols.comparative_modeling.threading: id.SequenceMapping 180 --> 180
protocols.comparative_modeling.threading: id.SequenceMapping 181 --> 181
protocols.comparative_modeling.threading: id.SequenceMapping 182 --> 182
protocols.comparative_modeling.threading: id.SequenceMapping 183 --> 183
protocols.comparative_modeling.threading: id.SequenceMapping 184 --> 184
protocols.comparative_modeling.threading: id.SequenceMapping 185 --> 185
protocols.comparative_modeling.threading: id.SequenceMapping 186 --> 186
protocols.comparative_modeling.threading: id.SequenceMapping 187 --> 187
protocols.comparative_modeling.threading: id.SequenceMapping 188 --> 188
protocols.comparative_modeling.threading: id.SequenceMapping 189 --> 189
protocols.comparative_modeling.threading: id.SequenceMapping 190 --> 190
protocols.comparative_modeling.threading: id.SequenceMapping 191 --> 191
protocols.comparative_modeling.threading: id.SequenceMapping 192 --> 192
protocols.comparative_modeling.threading: id.SequenceMapping 193 --> 193
protocols.comparative_modeling.threading: id.SequenceMapping 194 --> 194
protocols.comparative_modeling.threading: id.SequenceMapping 195 --> 195
protocols.comparative_modeling.threading: id.SequenceMapping 196 --> 196
protocols.comparative_modeling.threading: id.SequenceMapping 197 --> 197
protocols.comparative_modeling.threading: id.SequenceMapping 198 --> 198
protocols.comparative_modeling.threading: id.SequenceMapping 199 --> 199
protocols.comparative_modeling.threading: id.SequenceMapping 200 --> 200
protocols.comparative_modeling.threading: id.SequenceMapping 201 --> 201
protocols.comparative_modeling.threading: id.SequenceMapping 202 --> 202
protocols.comparative_modeling.threading: id.SequenceMapping 203 --> 203
protocols.comparative_modeling.threading: id.SequenceMapping 204 --> 204
protocols.comparative_modeling.threading: id.SequenceMapping 205 --> 205
protocols.comparative_modeling.threading: id.SequenceMapping 206 --> 206
protocols.comparative_modeling.threading: id.SequenceMapping 207 --> 207
protocols.comparative_modeling.threading: id.SequenceMapping 208 --> 208
protocols.comparative_modeling.threading: id.SequenceMapping 209 --> 209
protocols.comparative_modeling.threading: id.SequenceMapping 210 --> 210
protocols.comparative_modeling.threading: id.SequenceMapping 211 --> 211
protocols.comparative_modeling.threading: id.SequenceMapping 212 --> 212
protocols.comparative_modeling.threading: id.SequenceMapping 213 --> 213
protocols.comparative_modeling.threading: id.SequenceMapping 214 --> 214
protocols.comparative_modeling.threading: mapping from 1 to 2
protocols.comparative_modeling.threading: id.SequenceMapping 1 --> 1
protocols.comparative_modeling.threading: id.SequenceMapping 2 --> 2
protocols.comparative_modeling.threading: id.SequenceMapping 3 --> 3
protocols.comparative_modeling.threading: id.SequenceMapping 4 --> 4
protocols.comparative_modeling.threading: id.SequenceMapping 5 --> 5
protocols.comparative_modeling.threading: id.SequenceMapping 6 --> 6
protocols.comparative_modeling.threading: id.SequenceMapping 7 --> 7
protocols.comparative_modeling.threading: id.SequenceMapping 8 --> 8
protocols.comparative_modeling.threading: id.SequenceMapping 9 --> 9
protocols.comparative_modeling.threading: id.SequenceMapping 10 --> 10
protocols.comparative_modeling.threading: id.SequenceMapping 11 --> 11
protocols.comparative_modeling.threading: id.SequenceMapping 12 --> 12
protocols.comparative_modeling.threading: id.SequenceMapping 13 --> 13
protocols.comparative_modeling.threading: id.SequenceMapping 14 --> 14
protocols.comparative_modeling.threading: id.SequenceMapping 15 --> 15
protocols.comparative_modeling.threading: id.SequenceMapping 16 --> 16
protocols.comparative_modeling.threading: id.SequenceMapping 17 --> 17
protocols.comparative_modeling.threading: id.SequenceMapping 18 --> 18
protocols.comparative_modeling.threading: id.SequenceMapping 19 --> 19
protocols.comparative_modeling.threading: id.SequenceMapping 20 --> 20
protocols.comparative_modeling.threading: id.SequenceMapping 21 --> 21
protocols.comparative_modeling.threading: id.SequenceMapping 22 --> 22
protocols.comparative_modeling.threading: id.SequenceMapping 23 --> 23
protocols.comparative_modeling.threading: id.SequenceMapping 24 --> 24
protocols.comparative_modeling.threading: id.SequenceMapping 25 --> 25
protocols.comparative_modeling.threading: id.SequenceMapping 26 --> 26
protocols.comparative_modeling.threading: id.SequenceMapping 27 --> 27
protocols.comparative_modeling.threading: id.SequenceMapping 28 --> 28
protocols.comparative_modeling.threading: id.SequenceMapping 29 --> 29
protocols.comparative_modeling.threading: id.SequenceMapping 30 --> 30
protocols.comparative_modeling.threading: id.SequenceMapping 31 --> 31
protocols.comparative_modeling.threading: id.SequenceMapping 32 --> 32
protocols.comparative_modeling.threading: id.SequenceMapping 33 --> 33
protocols.comparative_modeling.threading: id.SequenceMapping 34 --> 34
protocols.comparative_modeling.threading: id.SequenceMapping 35 --> 35
protocols.comparative_modeling.threading: id.SequenceMapping 36 --> 36
protocols.comparative_modeling.threading: id.SequenceMapping 37 --> 37
protocols.comparative_modeling.threading: id.SequenceMapping 38 --> 38
protocols.comparative_modeling.threading: id.SequenceMapping 39 --> 39
protocols.comparative_modeling.threading: id.SequenceMapping 40 --> 40
protocols.comparative_modeling.threading: id.SequenceMapping 41 --> 41
protocols.comparative_modeling.threading: id.SequenceMapping 42 --> 42
protocols.comparative_modeling.threading: id.SequenceMapping 43 --> 43
protocols.comparative_modeling.threading: id.SequenceMapping 44 --> 44
protocols.comparative_modeling.threading: id.SequenceMapping 45 --> 45
protocols.comparative_modeling.threading: id.SequenceMapping 46 --> 46
protocols.comparative_modeling.threading: id.SequenceMapping 47 --> 47
protocols.comparative_modeling.threading: id.SequenceMapping 48 --> 48
protocols.comparative_modeling.threading: id.SequenceMapping 49 --> 49
protocols.comparative_modeling.threading: id.SequenceMapping 50 --> 50
protocols.comparative_modeling.threading: id.SequenceMapping 51 --> 51
protocols.comparative_modeling.threading: id.SequenceMapping 52 --> 52
protocols.comparative_modeling.threading: id.SequenceMapping 53 --> 53
protocols.comparative_modeling.threading: id.SequenceMapping 54 --> 54
protocols.comparative_modeling.threading: id.SequenceMapping 55 --> 55
protocols.comparative_modeling.threading: id.SequenceMapping 56 --> 56
protocols.comparative_modeling.threading: id.SequenceMapping 57 --> 57
protocols.comparative_modeling.threading: id.SequenceMapping 58 --> 58
protocols.comparative_modeling.threading: id.SequenceMapping 59 --> 59
protocols.comparative_modeling.threading: id.SequenceMapping 60 --> 60
protocols.comparative_modeling.threading: id.SequenceMapping 61 --> 61
protocols.comparative_modeling.threading: id.SequenceMapping 62 --> 62
protocols.comparative_modeling.threading: id.SequenceMapping 63 --> 63
protocols.comparative_modeling.threading: id.SequenceMapping 64 --> 64
protocols.comparative_modeling.threading: id.SequenceMapping 65 --> 65
protocols.comparative_modeling.threading: id.SequenceMapping 66 --> 66
protocols.comparative_modeling.threading: id.SequenceMapping 67 --> 67
protocols.comparative_modeling.threading: id.SequenceMapping 68 --> 68
protocols.comparative_modeling.threading: id.SequenceMapping 69 --> 69
protocols.comparative_modeling.threading: id.SequenceMapping 70 --> 70
protocols.comparative_modeling.threading: id.SequenceMapping 71 --> 71
protocols.comparative_modeling.threading: id.SequenceMapping 72 --> 72
protocols.comparative_modeling.threading: id.SequenceMapping 73 --> 73
protocols.comparative_modeling.threading: id.SequenceMapping 74 --> 74
protocols.comparative_modeling.threading: id.SequenceMapping 75 --> 75
protocols.comparative_modeling.threading: id.SequenceMapping 76 --> 76
protocols.comparative_modeling.threading: id.SequenceMapping 77 --> 77
protocols.comparative_modeling.threading: id.SequenceMapping 78 --> 78
protocols.comparative_modeling.threading: id.SequenceMapping 79 --> 79
protocols.comparative_modeling.threading: id.SequenceMapping 80 --> 80
protocols.comparative_modeling.threading: id.SequenceMapping 81 --> 81
protocols.comparative_modeling.threading: id.SequenceMapping 82 --> 82
protocols.comparative_modeling.threading: id.SequenceMapping 83 --> 83
protocols.comparative_modeling.threading: id.SequenceMapping 84 --> 84
protocols.comparative_modeling.threading: id.SequenceMapping 85 --> 85
protocols.comparative_modeling.threading: id.SequenceMapping 86 --> 86
protocols.comparative_modeling.threading: id.SequenceMapping 87 --> 87
protocols.comparative_modeling.threading: id.SequenceMapping 88 --> 88
protocols.comparative_modeling.threading: id.SequenceMapping 89 --> 89
protocols.comparative_modeling.threading: id.SequenceMapping 90 --> 90
protocols.comparative_modeling.threading: id.SequenceMapping 91 --> 91
protocols.comparative_modeling.threading: id.SequenceMapping 92 --> 92
protocols.comparative_modeling.threading: id.SequenceMapping 93 --> 93
protocols.comparative_modeling.threading: id.SequenceMapping 94 --> 94
protocols.comparative_modeling.threading: id.SequenceMapping 95 --> 95
protocols.comparative_modeling.threading: id.SequenceMapping 96 --> 96
protocols.comparative_modeling.threading: id.SequenceMapping 97 --> 97
protocols.comparative_modeling.threading: id.SequenceMapping 98 --> 98
protocols.comparative_modeling.threading: id.SequenceMapping 99 --> 99
protocols.comparative_modeling.threading: id.SequenceMapping 100 --> 100
protocols.comparative_modeling.threading: id.SequenceMapping 101 --> 101
protocols.comparative_modeling.threading: id.SequenceMapping 102 --> 102
protocols.comparative_modeling.threading: id.SequenceMapping 103 --> 103
protocols.comparative_modeling.threading: id.SequenceMapping 104 --> 104
protocols.comparative_modeling.threading: id.SequenceMapping 105 --> 105
protocols.comparative_modeling.threading: id.SequenceMapping 106 --> 106
protocols.comparative_modeling.threading: id.SequenceMapping 107 --> 107
protocols.comparative_modeling.threading: id.SequenceMapping 108 --> 108
protocols.comparative_modeling.threading: id.SequenceMapping 109 --> 109
protocols.comparative_modeling.threading: id.SequenceMapping 110 --> 110
protocols.comparative_modeling.threading: id.SequenceMapping 111 --> 111
protocols.comparative_modeling.threading: id.SequenceMapping 112 --> 112
protocols.comparative_modeling.threading: id.SequenceMapping 113 --> 113
protocols.comparative_modeling.threading: id.SequenceMapping 114 --> 114
protocols.comparative_modeling.threading: id.SequenceMapping 115 --> 115
protocols.comparative_modeling.threading: id.SequenceMapping 116 --> 116
protocols.comparative_modeling.threading: id.SequenceMapping 117 --> 117
protocols.comparative_modeling.threading: id.SequenceMapping 118 --> 118
protocols.comparative_modeling.threading: id.SequenceMapping 119 --> 119
protocols.comparative_modeling.threading: id.SequenceMapping 120 --> 120
protocols.comparative_modeling.threading: id.SequenceMapping 121 --> 121
protocols.comparative_modeling.threading: id.SequenceMapping 122 --> 122
protocols.comparative_modeling.threading: id.SequenceMapping 123 --> 123
protocols.comparative_modeling.threading: id.SequenceMapping 124 --> 124
protocols.comparative_modeling.threading: id.SequenceMapping 125 --> 125
protocols.comparative_modeling.threading: id.SequenceMapping 126 --> 126
protocols.comparative_modeling.threading: id.SequenceMapping 127 --> 127
protocols.comparative_modeling.threading: id.SequenceMapping 128 --> 128
protocols.comparative_modeling.threading: id.SequenceMapping 129 --> 129
protocols.comparative_modeling.threading: id.SequenceMapping 130 --> 130
protocols.comparative_modeling.threading: id.SequenceMapping 131 --> 131
protocols.comparative_modeling.threading: id.SequenceMapping 132 --> 132
protocols.comparative_modeling.threading: id.SequenceMapping 133 --> 133
protocols.comparative_modeling.threading: id.SequenceMapping 134 --> 134
protocols.comparative_modeling.threading: id.SequenceMapping 135 --> 135
protocols.comparative_modeling.threading: id.SequenceMapping 136 --> 136
protocols.comparative_modeling.threading: id.SequenceMapping 137 --> 137
protocols.comparative_modeling.threading: id.SequenceMapping 138 --> 138
protocols.comparative_modeling.threading: id.SequenceMapping 139 --> 139
protocols.comparative_modeling.threading: id.SequenceMapping 140 --> 140
protocols.comparative_modeling.threading: id.SequenceMapping 141 --> 141
protocols.comparative_modeling.threading: id.SequenceMapping 142 --> 142
protocols.comparative_modeling.threading: id.SequenceMapping 143 --> 143
protocols.comparative_modeling.threading: id.SequenceMapping 144 --> 144
protocols.comparative_modeling.threading: id.SequenceMapping 145 --> 145
protocols.comparative_modeling.threading: id.SequenceMapping 146 --> 146
protocols.comparative_modeling.threading: id.SequenceMapping 147 --> 147
protocols.comparative_modeling.threading: id.SequenceMapping 148 --> 148
protocols.comparative_modeling.threading: id.SequenceMapping 149 --> 149
protocols.comparative_modeling.threading: id.SequenceMapping 150 --> 150
protocols.comparative_modeling.threading: id.SequenceMapping 151 --> 151
protocols.comparative_modeling.threading: id.SequenceMapping 152 --> 152
protocols.comparative_modeling.threading: id.SequenceMapping 153 --> 153
protocols.comparative_modeling.threading: id.SequenceMapping 154 --> 154
protocols.comparative_modeling.threading: id.SequenceMapping 155 --> 155
protocols.comparative_modeling.threading: id.SequenceMapping 156 --> 156
protocols.comparative_modeling.threading: id.SequenceMapping 157 --> 157
protocols.comparative_modeling.threading: id.SequenceMapping 158 --> 158
protocols.comparative_modeling.threading: id.SequenceMapping 159 --> 159
protocols.comparative_modeling.threading: id.SequenceMapping 160 --> 160
protocols.comparative_modeling.threading: id.SequenceMapping 161 --> 161
protocols.comparative_modeling.threading: id.SequenceMapping 162 --> 162
protocols.comparative_modeling.threading: id.SequenceMapping 163 --> 163
protocols.comparative_modeling.threading: id.SequenceMapping 164 --> 164
protocols.comparative_modeling.threading: id.SequenceMapping 165 --> 165
protocols.comparative_modeling.threading: id.SequenceMapping 166 --> 166
protocols.comparative_modeling.threading: id.SequenceMapping 167 --> 167
protocols.comparative_modeling.threading: id.SequenceMapping 168 --> 168
protocols.comparative_modeling.threading: id.SequenceMapping 169 --> 169
protocols.comparative_modeling.threading: id.SequenceMapping 170 --> 170
protocols.comparative_modeling.threading: id.SequenceMapping 171 --> 171
protocols.comparative_modeling.threading: id.SequenceMapping 172 --> 172
protocols.comparative_modeling.threading: id.SequenceMapping 173 --> 173
protocols.comparative_modeling.threading: id.SequenceMapping 174 --> 174
protocols.comparative_modeling.threading: id.SequenceMapping 175 --> 175
protocols.comparative_modeling.threading: id.SequenceMapping 176 --> 176
protocols.comparative_modeling.threading: id.SequenceMapping 177 --> 177
protocols.comparative_modeling.threading: id.SequenceMapping 178 --> 178
protocols.comparative_modeling.threading: id.SequenceMapping 179 --> 179
protocols.comparative_modeling.threading: id.SequenceMapping 180 --> 180
protocols.comparative_modeling.threading: id.SequenceMapping 181 --> 181
protocols.comparative_modeling.threading: id.SequenceMapping 182 --> 182
protocols.comparative_modeling.threading: id.SequenceMapping 183 --> 183
protocols.comparative_modeling.threading: id.SequenceMapping 184 --> 184
protocols.comparative_modeling.threading: id.SequenceMapping 185 --> 185
protocols.comparative_modeling.threading: id.SequenceMapping 186 --> 186
protocols.comparative_modeling.threading: id.SequenceMapping 187 --> 187
protocols.comparative_modeling.threading: id.SequenceMapping 188 --> 188
protocols.comparative_modeling.threading: id.SequenceMapping 189 --> 189
protocols.comparative_modeling.threading: id.SequenceMapping 190 --> 190
protocols.comparative_modeling.threading: id.SequenceMapping 191 --> 191
protocols.comparative_modeling.threading: id.SequenceMapping 192 --> 192
protocols.comparative_modeling.threading: id.SequenceMapping 193 --> 193
protocols.comparative_modeling.threading: id.SequenceMapping 194 --> 194
protocols.comparative_modeling.threading: id.SequenceMapping 195 --> 195
protocols.comparative_modeling.threading: id.SequenceMapping 196 --> 196
protocols.comparative_modeling.threading: id.SequenceMapping 197 --> 197
protocols.comparative_modeling.threading: id.SequenceMapping 198 --> 198
protocols.comparative_modeling.threading: id.SequenceMapping 199 --> 199
protocols.comparative_modeling.threading: id.SequenceMapping 200 --> 200
protocols.comparative_modeling.threading: id.SequenceMapping 201 --> 201
protocols.comparative_modeling.threading: id.SequenceMapping 202 --> 202
protocols.comparative_modeling.threading: id.SequenceMapping 203 --> 203
protocols.comparative_modeling.threading: id.SequenceMapping 204 --> 204
protocols.comparative_modeling.threading: id.SequenceMapping 205 --> 205
protocols.comparative_modeling.threading: id.SequenceMapping 206 --> 206
protocols.comparative_modeling.threading: id.SequenceMapping 207 --> 207
protocols.comparative_modeling.threading: id.SequenceMapping 208 --> 208
protocols.comparative_modeling.threading: id.SequenceMapping 209 --> 209
protocols.comparative_modeling.threading: id.SequenceMapping 210 --> 210
protocols.comparative_modeling.threading: id.SequenceMapping 211 --> 211
protocols.comparative_modeling.threading: id.SequenceMapping 212 --> 212
protocols.comparative_modeling.threading: id.SequenceMapping 213 --> 213
protocols.comparative_modeling.threading: id.SequenceMapping 214 --> 214
protocols.comparative_modeling.threading: copying residue in query 1 from template residue 1
protocols.comparative_modeling.threading: copying residue in query 2 from template residue 2
protocols.comparative_modeling.threading: copying residue in query 3 from template residue 3
protocols.comparative_modeling.threading: copying residue in query 4 from template residue 4
protocols.comparative_modeling.threading: copying residue in query 5 from template residue 5
protocols.comparative_modeling.threading: copying residue in query 6 from template residue 6
protocols.comparative_modeling.threading: copying residue in query 7 from template residue 7
protocols.comparative_modeling.threading: copying residue in query 8 from template residue 8
protocols.comparative_modeling.threading: copying residue in query 9 from template residue 9
protocols.comparative_modeling.threading: copying residue in query 10 from template residue 10
protocols.comparative_modeling.threading: copying residue in query 11 from template residue 11
protocols.comparative_modeling.threading: copying residue in query 12 from template residue 12
protocols.comparative_modeling.threading: copying residue in query 13 from template residue 13
protocols.comparative_modeling.threading: copying residue in query 14 from template residue 14
protocols.comparative_modeling.threading: copying residue in query 15 from template residue 15
protocols.comparative_modeling.threading: copying residue in query 16 from template residue 16
protocols.comparative_modeling.threading: copying residue in query 17 from template residue 17
protocols.comparative_modeling.threading: copying residue in query 18 from template residue 18
protocols.comparative_modeling.threading: copying residue in query 19 from template residue 19
protocols.comparative_modeling.threading: copying residue in query 20 from template residue 20
protocols.comparative_modeling.threading: copying residue in query 21 from template residue 21
protocols.comparative_modeling.threading: copying residue in query 22 from template residue 22
protocols.comparative_modeling.threading: copying residue in query 23 from template residue 23
protocols.comparative_modeling.threading: skipping atom,position  HG ,23 because template doesn't have atom  HG .
protocols.comparative_modeling.threading: copying residue in query 24 from template residue 24
protocols.comparative_modeling.threading: copying residue in query 25 from template residue 25
protocols.comparative_modeling.threading: copying residue in query 26 from template residue 26
protocols.comparative_modeling.threading: copying residue in query 27 from template residue 27
protocols.comparative_modeling.threading: copying residue in query 28 from template residue 28
protocols.comparative_modeling.threading: copying residue in query 29 from template residue 29
protocols.comparative_modeling.threading: copying residue in query 30 from template residue 30
protocols.comparative_modeling.threading: copying residue in query 31 from template residue 31
protocols.comparative_modeling.threading: copying residue in query 32 from template residue 32
protocols.comparative_modeling.threading: copying residue in query 33 from template residue 33
protocols.comparative_modeling.threading: copying residue in query 34 from template residue 34
protocols.comparative_modeling.threading: copying residue in query 35 from template residue 35
protocols.comparative_modeling.threading: copying residue in query 36 from template residue 36
protocols.comparative_modeling.threading: copying residue in query 37 from template residue 37
protocols.comparative_modeling.threading: copying residue in query 38 from template residue 38
protocols.comparative_modeling.threading: copying residue in query 39 from template residue 39
protocols.comparative_modeling.threading: copying residue in query 40 from template residue 40
protocols.comparative_modeling.threading: copying residue in query 41 from template residue 41
protocols.comparative_modeling.threading: copying residue in query 42 from template residue 42
protocols.comparative_modeling.threading: copying residue in query 43 from template residue 43
protocols.comparative_modeling.threading: copying residue in query 44 from template residue 44
protocols.comparative_modeling.threading: copying residue in query 45 from template residue 45
protocols.comparative_modeling.threading: copying residue in query 46 from template residue 46
protocols.comparative_modeling.threading: copying residue in query 47 from template residue 47
protocols.comparative_modeling.threading: copying residue in query 48 from template residue 48
protocols.comparative_modeling.threading: copying residue in query 49 from template residue 49
protocols.comparative_modeling.threading: copying residue in query 50 from template residue 50
protocols.comparative_modeling.threading: copying residue in query 51 from template residue 51
protocols.comparative_modeling.threading: copying residue in query 52 from template residue 52
protocols.comparative_modeling.threading: copying residue in query 53 from template residue 53
protocols.comparative_modeling.threading: copying residue in query 54 from template residue 54
protocols.comparative_modeling.threading: copying residue in query 55 from template residue 55
protocols.comparative_modeling.threading: copying residue in query 56 from template residue 56
protocols.comparative_modeling.threading: copying residue in query 57 from template residue 57
protocols.comparative_modeling.threading: copying residue in query 58 from template residue 58
protocols.comparative_modeling.threading: copying residue in query 59 from template residue 59
protocols.comparative_modeling.threading: copying residue in query 60 from template residue 60
protocols.comparative_modeling.threading: copying residue in query 61 from template residue 61
protocols.comparative_modeling.threading: copying residue in query 62 from template residue 62
protocols.comparative_modeling.threading: copying residue in query 63 from template residue 63
protocols.comparative_modeling.threading: copying residue in query 64 from template residue 64
protocols.comparative_modeling.threading: copying residue in query 65 from template residue 65
protocols.comparative_modeling.threading: copying residue in query 66 from template residue 66
protocols.comparative_modeling.threading: copying residue in query 67 from template residue 67
protocols.comparative_modeling.threading: copying residue in query 68 from template residue 68
protocols.comparative_modeling.threading: copying residue in query 69 from template residue 69
protocols.comparative_modeling.threading: copying residue in query 70 from template residue 70
protocols.comparative_modeling.threading: copying residue in query 71 from template residue 71
protocols.comparative_modeling.threading: copying residue in query 72 from template residue 72
protocols.comparative_modeling.threading: copying residue in query 73 from template residue 73
protocols.comparative_modeling.threading: copying residue in query 74 from template residue 74
protocols.comparative_modeling.threading: copying residue in query 75 from template residue 75
protocols.comparative_modeling.threading: copying residue in query 76 from template residue 76
protocols.comparative_modeling.threading: copying residue in query 77 from template residue 77
protocols.comparative_modeling.threading: copying residue in query 78 from template residue 78
protocols.comparative_modeling.threading: copying residue in query 79 from template residue 79
protocols.comparative_modeling.threading: copying residue in query 80 from template residue 80
protocols.comparative_modeling.threading: copying residue in query 81 from template residue 81
protocols.comparative_modeling.threading: copying residue in query 82 from template residue 82
protocols.comparative_modeling.threading: copying residue in query 83 from template residue 83
protocols.comparative_modeling.threading: copying residue in query 84 from template residue 84
protocols.comparative_modeling.threading: copying residue in query 85 from template residue 85
protocols.comparative_modeling.threading: copying residue in query 86 from template residue 86
protocols.comparative_modeling.threading: copying residue in query 87 from template residue 87
protocols.comparative_modeling.threading: copying residue in query 88 from template residue 88
protocols.comparative_modeling.threading: skipping atom,position  HG ,88 because template doesn't have atom  HG .
protocols.comparative_modeling.threading: copying residue in query 89 from template residue 89
protocols.comparative_modeling.threading: copying residue in query 90 from template residue 90
protocols.comparative_modeling.threading: copying residue in query 91 from template residue 91
protocols.comparative_modeling.threading: copying residue in query 92 from template residue 92
protocols.comparative_modeling.threading: copying residue in query 93 from template residue 93
protocols.comparative_modeling.threading: copying residue in query 94 from template residue 94
protocols.comparative_modeling.threading: copying residue in query 95 from template residue 95
protocols.comparative_modeling.threading: copying residue in query 96 from template residue 96
protocols.comparative_modeling.threading: copying residue in query 97 from template residue 97
protocols.comparative_modeling.threading: copying residue in query 98 from template residue 98
protocols.comparative_modeling.threading: copying residue in query 99 from template residue 99
protocols.comparative_modeling.threading: copying residue in query 100 from template residue 100
protocols.comparative_modeling.threading: copying residue in query 101 from template residue 101
protocols.comparative_modeling.threading: copying residue in query 102 from template residue 102
protocols.comparative_modeling.threading: copying residue in query 103 from template residue 103
protocols.comparative_modeling.threading: copying residue in query 104 from template residue 104
protocols.comparative_modeling.threading: copying residue in query 105 from template residue 105
protocols.comparative_modeling.threading: copying residue in query 106 from template residue 106
protocols.comparative_modeling.threading: copying residue in query 107 from template residue 107
protocols.comparative_modeling.threading: copying residue in query 108 from template residue 108
protocols.comparative_modeling.threading: copying residue in query 109 from template residue 109
protocols.comparative_modeling.threading: copying residue in query 110 from template residue 110
protocols.comparative_modeling.threading: copying residue in query 111 from template residue 111
protocols.comparative_modeling.threading: copying residue in query 112 from template residue 112
protocols.comparative_modeling.threading: copying residue in query 113 from template residue 113
protocols.comparative_modeling.threading: copying residue in query 114 from template residue 114
protocols.comparative_modeling.threading: copying residue in query 115 from template residue 115
protocols.comparative_modeling.threading: copying residue in query 116 from template residue 116
protocols.comparative_modeling.threading: copying residue in query 117 from template residue 117
protocols.comparative_modeling.threading: copying residue in query 118 from template residue 118
protocols.comparative_modeling.threading: copying residue in query 119 from template residue 119
protocols.comparative_modeling.threading: copying residue in query 120 from template residue 120
protocols.comparative_modeling.threading: copying residue in query 121 from template residue 121
protocols.comparative_modeling.threading: copying residue in query 122 from template residue 122
protocols.comparative_modeling.threading: copying residue in query 123 from template residue 123
protocols.comparative_modeling.threading: copying residue in query 124 from template residue 124
protocols.comparative_modeling.threading: copying residue in query 125 from template residue 125
protocols.comparative_modeling.threading: copying residue in query 126 from template residue 126
protocols.comparative_modeling.threading: copying residue in query 127 from template residue 127
protocols.comparative_modeling.threading: copying residue in query 128 from template residue 128
protocols.comparative_modeling.threading: copying residue in query 129 from template residue 129
protocols.comparative_modeling.threading: copying residue in query 130 from template residue 130
protocols.comparative_modeling.threading: copying residue in query 131 from template residue 131
protocols.comparative_modeling.threading: copying residue in query 132 from template residue 132
protocols.comparative_modeling.threading: copying residue in query 133 from template residue 133
protocols.comparative_modeling.threading: copying residue in query 134 from template residue 134
protocols.comparative_modeling.threading: skipping atom,position  HG ,134 because template doesn't have atom  HG .
protocols.comparative_modeling.threading: copying residue in query 135 from template residue 135
protocols.comparative_modeling.threading: copying residue in query 136 from template residue 136
protocols.comparative_modeling.threading: copying residue in query 137 from template residue 137
protocols.comparative_modeling.threading: copying residue in query 138 from template residue 138
protocols.comparative_modeling.threading: copying residue in query 139 from template residue 139
protocols.comparative_modeling.threading: copying residue in query 140 from template residue 140
protocols.comparative_modeling.threading: copying residue in query 141 from template residue 141
protocols.comparative_modeling.threading: copying residue in query 142 from template residue 142
protocols.comparative_modeling.threading: copying residue in query 143 from template residue 143
protocols.comparative_modeling.threading: copying residue in query 144 from template residue 144
protocols.comparative_modeling.threading: copying residue in query 145 from template residue 145
protocols.comparative_modeling.threading: copying residue in query 146 from template residue 146
protocols.comparative_modeling.threading: copying residue in query 147 from template residue 147
protocols.comparative_modeling.threading: copying residue in query 148 from template residue 148
protocols.comparative_modeling.threading: copying residue in query 149 from template residue 149
protocols.comparative_modeling.threading: copying residue in query 150 from template residue 150
protocols.comparative_modeling.threading: copying residue in query 151 from template residue 151
protocols.comparative_modeling.threading: copying residue in query 152 from template residue 152
protocols.comparative_modeling.threading: copying residue in query 153 from template residue 153
protocols.comparative_modeling.threading: copying residue in query 154 from template residue 154
protocols.comparative_modeling.threading: copying residue in query 155 from template residue 155
protocols.comparative_modeling.threading: copying residue in query 156 from template residue 156
protocols.comparative_modeling.threading: copying residue in query 157 from template residue 157
protocols.comparative_modeling.threading: copying residue in query 158 from template residue 158
protocols.comparative_modeling.threading: copying residue in query 159 from template residue 159
protocols.comparative_modeling.threading: copying residue in query 160 from template residue 160
protocols.comparative_modeling.threading: copying residue in query 161 from template residue 161
protocols.comparative_modeling.threading: copying residue in query 162 from template residue 162
protocols.comparative_modeling.threading: copying residue in query 163 from template residue 163
protocols.comparative_modeling.threading: copying residue in query 164 from template residue 164
protocols.comparative_modeling.threading: copying residue in query 165 from template residue 165
protocols.comparative_modeling.threading: copying residue in query 166 from template residue 166
protocols.comparative_modeling.threading: copying residue in query 167 from template residue 167
protocols.comparative_modeling.threading: copying residue in query 168 from template residue 168
protocols.comparative_modeling.threading: copying residue in query 169 from template residue 169
protocols.comparative_modeling.threading: copying residue in query 170 from template residue 170
protocols.comparative_modeling.threading: copying residue in query 171 from template residue 171
protocols.comparative_modeling.threading: copying residue in query 172 from template residue 172
protocols.comparative_modeling.threading: copying residue in query 173 from template residue 173
protocols.comparative_modeling.threading: copying residue in query 174 from template residue 174
protocols.comparative_modeling.threading: copying residue in query 175 from template residue 175
protocols.comparative_modeling.threading: copying residue in query 176 from template residue 176
protocols.comparative_modeling.threading: copying residue in query 177 from template residue 177
protocols.comparative_modeling.threading: copying residue in query 178 from template residue 178
protocols.comparative_modeling.threading: copying residue in query 179 from template residue 179
protocols.comparative_modeling.threading: copying residue in query 180 from template residue 180
protocols.comparative_modeling.threading: copying residue in query 181 from template residue 181
protocols.comparative_modeling.threading: copying residue in query 182 from template residue 182
protocols.comparative_modeling.threading: copying residue in query 183 from template residue 183
protocols.comparative_modeling.threading: copying residue in query 184 from template residue 184
protocols.comparative_modeling.threading: copying residue in query 185 from template residue 185
protocols.comparative_modeling.threading: copying residue in query 186 from template residue 186
protocols.comparative_modeling.threading: copying residue in query 187 from template residue 187
protocols.comparative_modeling.threading: copying residue in query 188 from template residue 188
protocols.comparative_modeling.threading: copying residue in query 189 from template residue 189
protocols.comparative_modeling.threading: copying residue in query 190 from template residue 190
protocols.comparative_modeling.threading: copying residue in query 191 from template residue 191
protocols.comparative_modeling.threading: copying residue in query 192 from template residue 192
protocols.comparative_modeling.threading: copying residue in query 193 from template residue 193
protocols.comparative_modeling.threading: copying residue in query 194 from template residue 194
protocols.comparative_modeling.threading: skipping atom,position  HG ,194 because template doesn't have atom  HG .
protocols.comparative_modeling.threading: copying residue in query 195 from template residue 195
protocols.comparative_modeling.threading: copying residue in query 196 from template residue 196
protocols.comparative_modeling.threading: copying residue in query 197 from template residue 197
protocols.comparative_modeling.threading: copying residue in query 198 from template residue 198
protocols.comparative_modeling.threading: copying residue in query 199 from template residue 199
protocols.comparative_modeling.threading: copying residue in query 200 from template residue 200
protocols.comparative_modeling.threading: copying residue in query 201 from template residue 201
protocols.comparative_modeling.threading: copying residue in query 202 from template residue 202
protocols.comparative_modeling.threading: copying residue in query 203 from template residue 203
protocols.comparative_modeling.threading: copying residue in query 204 from template residue 204
protocols.comparative_modeling.threading: copying residue in query 205 from template residue 205
protocols.comparative_modeling.threading: copying residue in query 206 from template residue 206
protocols.comparative_modeling.threading: copying residue in query 207 from template residue 207
protocols.comparative_modeling.threading: copying residue in query 208 from template residue 208
protocols.comparative_modeling.threading: copying residue in query 209 from template residue 209
protocols.comparative_modeling.threading: copying residue in query 210 from template residue 210
protocols.comparative_modeling.threading: copying residue in query 211 from template residue 211
protocols.comparative_modeling.threading: copying residue in query 212 from template residue 212
protocols.comparative_modeling.threading: copying residue in query 213 from template residue 213
protocols.comparative_modeling.threading: copying residue in query 214 from template residue 214
protocols.comparative_modeling.threading: Built threading model for sequence DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.threading: Copied 214 / 214 from 4KMT_LC
protocols.jd2.JobDistributor: new input detected, is: S_4KMT_LC, last was: 
protocols.jd2.JobDistributor: run mover... 
protocols.comparative_modeling.util: called loops_from_multiple_alignments with arguments:
protocols.comparative_modeling.util: 214
protocols.comparative_modeling.util: score: 0 identities: 194/214 gaps: 0/214
protocols.comparative_modeling.util:             C226S_LC       1 DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.util:              4KMT_LC       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.util: 
protocols.comparative_modeling.util: 214
protocols.comparative_modeling.util: score: 25680 identities: 214/214 gaps: 0/214
protocols.comparative_modeling.util:              4KMT_LC       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.util:              4KMT_LC       1 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
protocols.comparative_modeling.util: 
protocols.comparative_modeling.util: 0
protocols.comparative_modeling.util: id.SequenceMapping 1 --> 1
protocols.comparative_modeling.util: id.SequenceMapping 2 --> 2
protocols.comparative_modeling.util: id.SequenceMapping 3 --> 3
protocols.comparative_modeling.util: id.SequenceMapping 4 --> 4
protocols.comparative_modeling.util: id.SequenceMapping 5 --> 5
protocols.comparative_modeling.util: id.SequenceMapping 6 --> 6
protocols.comparative_modeling.util: id.SequenceMapping 7 --> 7
protocols.comparative_modeling.util: id.SequenceMapping 8 --> 8
protocols.comparative_modeling.util: id.SequenceMapping 9 --> 9
protocols.comparative_modeling.util: id.SequenceMapping 10 --> 10
protocols.comparative_modeling.util: id.SequenceMapping 11 --> 11
protocols.comparative_modeling.util: id.SequenceMapping 12 --> 12
protocols.comparative_modeling.util: id.SequenceMapping 13 --> 13
protocols.comparative_modeling.util: id.SequenceMapping 14 --> 14
protocols.comparative_modeling.util: id.SequenceMapping 15 --> 15
protocols.comparative_modeling.util: id.SequenceMapping 16 --> 16
protocols.comparative_modeling.util: id.SequenceMapping 17 --> 17
protocols.comparative_modeling.util: id.SequenceMapping 18 --> 18
protocols.comparative_modeling.util: id.SequenceMapping 19 --> 19
protocols.comparative_modeling.util: id.SequenceMapping 20 --> 20
protocols.comparative_modeling.util: id.SequenceMapping 21 --> 21
protocols.comparative_modeling.util: id.SequenceMapping 22 --> 22
protocols.comparative_modeling.util: id.SequenceMapping 23 --> 23
protocols.comparative_modeling.util: id.SequenceMapping 24 --> 24
protocols.comparative_modeling.util: id.SequenceMapping 25 --> 25
protocols.comparative_modeling.util: id.SequenceMapping 26 --> 26
protocols.comparative_modeling.util: id.SequenceMapping 27 --> 27
protocols.comparative_modeling.util: id.SequenceMapping 28 --> 28
protocols.comparative_modeling.util: id.SequenceMapping 29 --> 29
protocols.comparative_modeling.util: id.SequenceMapping 30 --> 30
protocols.comparative_modeling.util: id.SequenceMapping 31 --> 31
protocols.comparative_modeling.util: id.SequenceMapping 32 --> 32
protocols.comparative_modeling.util: id.SequenceMapping 33 --> 33
protocols.comparative_modeling.util: id.SequenceMapping 34 --> 34
protocols.comparative_modeling.util: id.SequenceMapping 35 --> 35
protocols.comparative_modeling.util: id.SequenceMapping 36 --> 36
protocols.comparative_modeling.util: id.SequenceMapping 37 --> 37
protocols.comparative_modeling.util: id.SequenceMapping 38 --> 38
protocols.comparative_modeling.util: id.SequenceMapping 39 --> 39
protocols.comparative_modeling.util: id.SequenceMapping 40 --> 40
protocols.comparative_modeling.util: id.SequenceMapping 41 --> 41
protocols.comparative_modeling.util: id.SequenceMapping 42 --> 42
protocols.comparative_modeling.util: id.SequenceMapping 43 --> 43
protocols.comparative_modeling.util: id.SequenceMapping 44 --> 44
protocols.comparative_modeling.util: id.SequenceMapping 45 --> 45
protocols.comparative_modeling.util: id.SequenceMapping 46 --> 46
protocols.comparative_modeling.util: id.SequenceMapping 47 --> 47
protocols.comparative_modeling.util: id.SequenceMapping 48 --> 48
protocols.comparative_modeling.util: id.SequenceMapping 49 --> 49
protocols.comparative_modeling.util: id.SequenceMapping 50 --> 50
protocols.comparative_modeling.util: id.SequenceMapping 51 --> 51
protocols.comparative_modeling.util: id.SequenceMapping 52 --> 52
protocols.comparative_modeling.util: id.SequenceMapping 53 --> 53
protocols.comparative_modeling.util: id.SequenceMapping 54 --> 54
protocols.comparative_modeling.util: id.SequenceMapping 55 --> 55
protocols.comparative_modeling.util: id.SequenceMapping 56 --> 56
protocols.comparative_modeling.util: id.SequenceMapping 57 --> 57
protocols.comparative_modeling.util: id.SequenceMapping 58 --> 58
protocols.comparative_modeling.util: id.SequenceMapping 59 --> 59
protocols.comparative_modeling.util: id.SequenceMapping 60 --> 60
protocols.comparative_modeling.util: id.SequenceMapping 61 --> 61
protocols.comparative_modeling.util: id.SequenceMapping 62 --> 62
protocols.comparative_modeling.util: id.SequenceMapping 63 --> 63
protocols.comparative_modeling.util: id.SequenceMapping 64 --> 64
protocols.comparative_modeling.util: id.SequenceMapping 65 --> 65
protocols.comparative_modeling.util: id.SequenceMapping 66 --> 66
protocols.comparative_modeling.util: id.SequenceMapping 67 --> 67
protocols.comparative_modeling.util: id.SequenceMapping 68 --> 68
protocols.comparative_modeling.util: id.SequenceMapping 69 --> 69
protocols.comparative_modeling.util: id.SequenceMapping 70 --> 70
protocols.comparative_modeling.util: id.SequenceMapping 71 --> 71
protocols.comparative_modeling.util: id.SequenceMapping 72 --> 72
protocols.comparative_modeling.util: id.SequenceMapping 73 --> 73
protocols.comparative_modeling.util: id.SequenceMapping 74 --> 74
protocols.comparative_modeling.util: id.SequenceMapping 75 --> 75
protocols.comparative_modeling.util: id.SequenceMapping 76 --> 76
protocols.comparative_modeling.util: id.SequenceMapping 77 --> 77
protocols.comparative_modeling.util: id.SequenceMapping 78 --> 78
protocols.comparative_modeling.util: id.SequenceMapping 79 --> 79
protocols.comparative_modeling.util: id.SequenceMapping 80 --> 80
protocols.comparative_modeling.util: id.SequenceMapping 81 --> 81
protocols.comparative_modeling.util: id.SequenceMapping 82 --> 82
protocols.comparative_modeling.util: id.SequenceMapping 83 --> 83
protocols.comparative_modeling.util: id.SequenceMapping 84 --> 84
protocols.comparative_modeling.util: id.SequenceMapping 85 --> 85
protocols.comparative_modeling.util: id.SequenceMapping 86 --> 86
protocols.comparative_modeling.util: id.SequenceMapping 87 --> 87
protocols.comparative_modeling.util: id.SequenceMapping 88 --> 88
protocols.comparative_modeling.util: id.SequenceMapping 89 --> 89
protocols.comparative_modeling.util: id.SequenceMapping 90 --> 90
protocols.comparative_modeling.util: id.SequenceMapping 91 --> 91
protocols.comparative_modeling.util: id.SequenceMapping 92 --> 92
protocols.comparative_modeling.util: id.SequenceMapping 93 --> 93
protocols.comparative_modeling.util: id.SequenceMapping 94 --> 94
protocols.comparative_modeling.util: id.SequenceMapping 95 --> 95
protocols.comparative_modeling.util: id.SequenceMapping 96 --> 96
protocols.comparative_modeling.util: id.SequenceMapping 97 --> 97
protocols.comparative_modeling.util: id.SequenceMapping 98 --> 98
protocols.comparative_modeling.util: id.SequenceMapping 99 --> 99
protocols.comparative_modeling.util: id.SequenceMapping 100 --> 100
protocols.comparative_modeling.util: id.SequenceMapping 101 --> 101
protocols.comparative_modeling.util: id.SequenceMapping 102 --> 102
protocols.comparative_modeling.util: id.SequenceMapping 103 --> 103
protocols.comparative_modeling.util: id.SequenceMapping 104 --> 104
protocols.comparative_modeling.util: id.SequenceMapping 105 --> 105
protocols.comparative_modeling.util: id.SequenceMapping 106 --> 106
protocols.comparative_modeling.util: id.SequenceMapping 107 --> 107
protocols.comparative_modeling.util: id.SequenceMapping 108 --> 108
protocols.comparative_modeling.util: id.SequenceMapping 109 --> 109
protocols.comparative_modeling.util: id.SequenceMapping 110 --> 110
protocols.comparative_modeling.util: id.SequenceMapping 111 --> 111
protocols.comparative_modeling.util: id.SequenceMapping 112 --> 112
protocols.comparative_modeling.util: id.SequenceMapping 113 --> 113
protocols.comparative_modeling.util: id.SequenceMapping 114 --> 114
protocols.comparative_modeling.util: id.SequenceMapping 115 --> 115
protocols.comparative_modeling.util: id.SequenceMapping 116 --> 116
protocols.comparative_modeling.util: id.SequenceMapping 117 --> 117
protocols.comparative_modeling.util: id.SequenceMapping 118 --> 118
protocols.comparative_modeling.util: id.SequenceMapping 119 --> 119
protocols.comparative_modeling.util: id.SequenceMapping 120 --> 120
protocols.comparative_modeling.util: id.SequenceMapping 121 --> 121
protocols.comparative_modeling.util: id.SequenceMapping 122 --> 122
protocols.comparative_modeling.util: id.SequenceMapping 123 --> 123
protocols.comparative_modeling.util: id.SequenceMapping 124 --> 124
protocols.comparative_modeling.util: id.SequenceMapping 125 --> 125
protocols.comparative_modeling.util: id.SequenceMapping 126 --> 126
protocols.comparative_modeling.util: id.SequenceMapping 127 --> 127
protocols.comparative_modeling.util: id.SequenceMapping 128 --> 128
protocols.comparative_modeling.util: id.SequenceMapping 129 --> 129
protocols.comparative_modeling.util: id.SequenceMapping 130 --> 130
protocols.comparative_modeling.util: id.SequenceMapping 131 --> 131
protocols.comparative_modeling.util: id.SequenceMapping 132 --> 132
protocols.comparative_modeling.util: id.SequenceMapping 133 --> 133
protocols.comparative_modeling.util: id.SequenceMapping 134 --> 134
protocols.comparative_modeling.util: id.SequenceMapping 135 --> 135
protocols.comparative_modeling.util: id.SequenceMapping 136 --> 136
protocols.comparative_modeling.util: id.SequenceMapping 137 --> 137
protocols.comparative_modeling.util: id.SequenceMapping 138 --> 138
protocols.comparative_modeling.util: id.SequenceMapping 139 --> 139
protocols.comparative_modeling.util: id.SequenceMapping 140 --> 140
protocols.comparative_modeling.util: id.SequenceMapping 141 --> 141
protocols.comparative_modeling.util: id.SequenceMapping 142 --> 142
protocols.comparative_modeling.util: id.SequenceMapping 143 --> 143
protocols.comparative_modeling.util: id.SequenceMapping 144 --> 144
protocols.comparative_modeling.util: id.SequenceMapping 145 --> 145
protocols.comparative_modeling.util: id.SequenceMapping 146 --> 146
protocols.comparative_modeling.util: id.SequenceMapping 147 --> 147
protocols.comparative_modeling.util: id.SequenceMapping 148 --> 148
protocols.comparative_modeling.util: id.SequenceMapping 149 --> 149
protocols.comparative_modeling.util: id.SequenceMapping 150 --> 150
protocols.comparative_modeling.util: id.SequenceMapping 151 --> 151
protocols.comparative_modeling.util: id.SequenceMapping 152 --> 152
protocols.comparative_modeling.util: id.SequenceMapping 153 --> 153
protocols.comparative_modeling.util: id.SequenceMapping 154 --> 154
protocols.comparative_modeling.util: id.SequenceMapping 155 --> 155
protocols.comparative_modeling.util: id.SequenceMapping 156 --> 156
protocols.comparative_modeling.util: id.SequenceMapping 157 --> 157
protocols.comparative_modeling.util: id.SequenceMapping 158 --> 158
protocols.comparative_modeling.util: id.SequenceMapping 159 --> 159
protocols.comparative_modeling.util: id.SequenceMapping 160 --> 160
protocols.comparative_modeling.util: id.SequenceMapping 161 --> 161
protocols.comparative_modeling.util: id.SequenceMapping 162 --> 162
protocols.comparative_modeling.util: id.SequenceMapping 163 --> 163
protocols.comparative_modeling.util: id.SequenceMapping 164 --> 164
protocols.comparative_modeling.util: id.SequenceMapping 165 --> 165
protocols.comparative_modeling.util: id.SequenceMapping 166 --> 166
protocols.comparative_modeling.util: id.SequenceMapping 167 --> 167
protocols.comparative_modeling.util: id.SequenceMapping 168 --> 168
protocols.comparative_modeling.util: id.SequenceMapping 169 --> 169
protocols.comparative_modeling.util: id.SequenceMapping 170 --> 170
protocols.comparative_modeling.util: id.SequenceMapping 171 --> 171
protocols.comparative_modeling.util: id.SequenceMapping 172 --> 172
protocols.comparative_modeling.util: id.SequenceMapping 173 --> 173
protocols.comparative_modeling.util: id.SequenceMapping 174 --> 174
protocols.comparative_modeling.util: id.SequenceMapping 175 --> 175
protocols.comparative_modeling.util: id.SequenceMapping 176 --> 176
protocols.comparative_modeling.util: id.SequenceMapping 177 --> 177
protocols.comparative_modeling.util: id.SequenceMapping 178 --> 178
protocols.comparative_modeling.util: id.SequenceMapping 179 --> 179
protocols.comparative_modeling.util: id.SequenceMapping 180 --> 180
protocols.comparative_modeling.util: id.SequenceMapping 181 --> 181
protocols.comparative_modeling.util: id.SequenceMapping 182 --> 182
protocols.comparative_modeling.util: id.SequenceMapping 183 --> 183
protocols.comparative_modeling.util: id.SequenceMapping 184 --> 184
protocols.comparative_modeling.util: id.SequenceMapping 185 --> 185
protocols.comparative_modeling.util: id.SequenceMapping 186 --> 186
protocols.comparative_modeling.util: id.SequenceMapping 187 --> 187
protocols.comparative_modeling.util: id.SequenceMapping 188 --> 188
protocols.comparative_modeling.util: id.SequenceMapping 189 --> 189
protocols.comparative_modeling.util: id.SequenceMapping 190 --> 190
protocols.comparative_modeling.util: id.SequenceMapping 191 --> 191
protocols.comparative_modeling.util: id.SequenceMapping 192 --> 192
protocols.comparative_modeling.util: id.SequenceMapping 193 --> 193
protocols.comparative_modeling.util: id.SequenceMapping 194 --> 194
protocols.comparative_modeling.util: id.SequenceMapping 195 --> 195
protocols.comparative_modeling.util: id.SequenceMapping 196 --> 196
protocols.comparative_modeling.util: id.SequenceMapping 197 --> 197
protocols.comparative_modeling.util: id.SequenceMapping 198 --> 198
protocols.comparative_modeling.util: id.SequenceMapping 199 --> 199
protocols.comparative_modeling.util: id.SequenceMapping 200 --> 200
protocols.comparative_modeling.util: id.SequenceMapping 201 --> 201
protocols.comparative_modeling.util: id.SequenceMapping 202 --> 202
protocols.comparative_modeling.util: id.SequenceMapping 203 --> 203
protocols.comparative_modeling.util: id.SequenceMapping 204 --> 204
protocols.comparative_modeling.util: id.SequenceMapping 205 --> 205
protocols.comparative_modeling.util: id.SequenceMapping 206 --> 206
protocols.comparative_modeling.util: id.SequenceMapping 207 --> 207
protocols.comparative_modeling.util: id.SequenceMapping 208 --> 208
protocols.comparative_modeling.util: id.SequenceMapping 209 --> 209
protocols.comparative_modeling.util: id.SequenceMapping 210 --> 210
protocols.comparative_modeling.util: id.SequenceMapping 211 --> 211
protocols.comparative_modeling.util: id.SequenceMapping 212 --> 212
protocols.comparative_modeling.util: id.SequenceMapping 213 --> 213
protocols.comparative_modeling.util: id.SequenceMapping 214 --> 214
protocols.comparative_modeling.util: id.SequenceMapping 1 --> 1
protocols.comparative_modeling.util: id.SequenceMapping 2 --> 2
protocols.comparative_modeling.util: id.SequenceMapping 3 --> 3
protocols.comparative_modeling.util: id.SequenceMapping 4 --> 4
protocols.comparative_modeling.util: id.SequenceMapping 5 --> 5
protocols.comparative_modeling.util: id.SequenceMapping 6 --> 6
protocols.comparative_modeling.util: id.SequenceMapping 7 --> 7
protocols.comparative_modeling.util: id.SequenceMapping 8 --> 8
protocols.comparative_modeling.util: id.SequenceMapping 9 --> 9
protocols.comparative_modeling.util: id.SequenceMapping 10 --> 10
protocols.comparative_modeling.util: id.SequenceMapping 11 --> 11
protocols.comparative_modeling.util: id.SequenceMapping 12 --> 12
protocols.comparative_modeling.util: id.SequenceMapping 13 --> 13
protocols.comparative_modeling.util: id.SequenceMapping 14 --> 14
protocols.comparative_modeling.util: id.SequenceMapping 15 --> 15
protocols.comparative_modeling.util: id.SequenceMapping 16 --> 16
protocols.comparative_modeling.util: id.SequenceMapping 17 --> 17
protocols.comparative_modeling.util: id.SequenceMapping 18 --> 18
protocols.comparative_modeling.util: id.SequenceMapping 19 --> 19
protocols.comparative_modeling.util: id.SequenceMapping 20 --> 20
protocols.comparative_modeling.util: id.SequenceMapping 21 --> 21
protocols.comparative_modeling.util: id.SequenceMapping 22 --> 22
protocols.comparative_modeling.util: id.SequenceMapping 23 --> 23
protocols.comparative_modeling.util: id.SequenceMapping 24 --> 24
protocols.comparative_modeling.util: id.SequenceMapping 25 --> 25
protocols.comparative_modeling.util: id.SequenceMapping 26 --> 26
protocols.comparative_modeling.util: id.SequenceMapping 27 --> 27
protocols.comparative_modeling.util: id.SequenceMapping 28 --> 28
protocols.comparative_modeling.util: id.SequenceMapping 29 --> 29
protocols.comparative_modeling.util: id.SequenceMapping 30 --> 30
protocols.comparative_modeling.util: id.SequenceMapping 31 --> 31
protocols.comparative_modeling.util: id.SequenceMapping 32 --> 32
protocols.comparative_modeling.util: id.SequenceMapping 33 --> 33
protocols.comparative_modeling.util: id.SequenceMapping 34 --> 34
protocols.comparative_modeling.util: id.SequenceMapping 35 --> 35
protocols.comparative_modeling.util: id.SequenceMapping 36 --> 36
protocols.comparative_modeling.util: id.SequenceMapping 37 --> 37
protocols.comparative_modeling.util: id.SequenceMapping 38 --> 38
protocols.comparative_modeling.util: id.SequenceMapping 39 --> 39
protocols.comparative_modeling.util: id.SequenceMapping 40 --> 40
protocols.comparative_modeling.util: id.SequenceMapping 41 --> 41
protocols.comparative_modeling.util: id.SequenceMapping 42 --> 42
protocols.comparative_modeling.util: id.SequenceMapping 43 --> 43
protocols.comparative_modeling.util: id.SequenceMapping 44 --> 44
protocols.comparative_modeling.util: id.SequenceMapping 45 --> 45
protocols.comparative_modeling.util: id.SequenceMapping 46 --> 46
protocols.comparative_modeling.util: id.SequenceMapping 47 --> 47
protocols.comparative_modeling.util: id.SequenceMapping 48 --> 48
protocols.comparative_modeling.util: id.SequenceMapping 49 --> 49
protocols.comparative_modeling.util: id.SequenceMapping 50 --> 50
protocols.comparative_modeling.util: id.SequenceMapping 51 --> 51
protocols.comparative_modeling.util: id.SequenceMapping 52 --> 52
protocols.comparative_modeling.util: id.SequenceMapping 53 --> 53
protocols.comparative_modeling.util: id.SequenceMapping 54 --> 54
protocols.comparative_modeling.util: id.SequenceMapping 55 --> 55
protocols.comparative_modeling.util: id.SequenceMapping 56 --> 56
protocols.comparative_modeling.util: id.SequenceMapping 57 --> 57
protocols.comparative_modeling.util: id.SequenceMapping 58 --> 58
protocols.comparative_modeling.util: id.SequenceMapping 59 --> 59
protocols.comparative_modeling.util: id.SequenceMapping 60 --> 60
protocols.comparative_modeling.util: id.SequenceMapping 61 --> 61
protocols.comparative_modeling.util: id.SequenceMapping 62 --> 62
protocols.comparative_modeling.util: id.SequenceMapping 63 --> 63
protocols.comparative_modeling.util: id.SequenceMapping 64 --> 64
protocols.comparative_modeling.util: id.SequenceMapping 65 --> 65
protocols.comparative_modeling.util: id.SequenceMapping 66 --> 66
protocols.comparative_modeling.util: id.SequenceMapping 67 --> 67
protocols.comparative_modeling.util: id.SequenceMapping 68 --> 68
protocols.comparative_modeling.util: id.SequenceMapping 69 --> 69
protocols.comparative_modeling.util: id.SequenceMapping 70 --> 70
protocols.comparative_modeling.util: id.SequenceMapping 71 --> 71
protocols.comparative_modeling.util: id.SequenceMapping 72 --> 72
protocols.comparative_modeling.util: id.SequenceMapping 73 --> 73
protocols.comparative_modeling.util: id.SequenceMapping 74 --> 74
protocols.comparative_modeling.util: id.SequenceMapping 75 --> 75
protocols.comparative_modeling.util: id.SequenceMapping 76 --> 76
protocols.comparative_modeling.util: id.SequenceMapping 77 --> 77
protocols.comparative_modeling.util: id.SequenceMapping 78 --> 78
protocols.comparative_modeling.util: id.SequenceMapping 79 --> 79
protocols.comparative_modeling.util: id.SequenceMapping 80 --> 80
protocols.comparative_modeling.util: id.SequenceMapping 81 --> 81
protocols.comparative_modeling.util: id.SequenceMapping 82 --> 82
protocols.comparative_modeling.util: id.SequenceMapping 83 --> 83
protocols.comparative_modeling.util: id.SequenceMapping 84 --> 84
protocols.comparative_modeling.util: id.SequenceMapping 85 --> 85
protocols.comparative_modeling.util: id.SequenceMapping 86 --> 86
protocols.comparative_modeling.util: id.SequenceMapping 87 --> 87
protocols.comparative_modeling.util: id.SequenceMapping 88 --> 88
protocols.comparative_modeling.util: id.SequenceMapping 89 --> 89
protocols.comparative_modeling.util: id.SequenceMapping 90 --> 90
protocols.comparative_modeling.util: id.SequenceMapping 91 --> 91
protocols.comparative_modeling.util: id.SequenceMapping 92 --> 92
protocols.comparative_modeling.util: id.SequenceMapping 93 --> 93
protocols.comparative_modeling.util: id.SequenceMapping 94 --> 94
protocols.comparative_modeling.util: id.SequenceMapping 95 --> 95
protocols.comparative_modeling.util: id.SequenceMapping 96 --> 96
protocols.comparative_modeling.util: id.SequenceMapping 97 --> 97
protocols.comparative_modeling.util: id.SequenceMapping 98 --> 98
protocols.comparative_modeling.util: id.SequenceMapping 99 --> 99
protocols.comparative_modeling.util: id.SequenceMapping 100 --> 100
protocols.comparative_modeling.util: id.SequenceMapping 101 --> 101
protocols.comparative_modeling.util: id.SequenceMapping 102 --> 102
protocols.comparative_modeling.util: id.SequenceMapping 103 --> 103
protocols.comparative_modeling.util: id.SequenceMapping 104 --> 104
protocols.comparative_modeling.util: id.SequenceMapping 105 --> 105
protocols.comparative_modeling.util: id.SequenceMapping 106 --> 106
protocols.comparative_modeling.util: id.SequenceMapping 107 --> 107
protocols.comparative_modeling.util: id.SequenceMapping 108 --> 108
protocols.comparative_modeling.util: id.SequenceMapping 109 --> 109
protocols.comparative_modeling.util: id.SequenceMapping 110 --> 110
protocols.comparative_modeling.util: id.SequenceMapping 111 --> 111
protocols.comparative_modeling.util: id.SequenceMapping 112 --> 112
protocols.comparative_modeling.util: id.SequenceMapping 113 --> 113
protocols.comparative_modeling.util: id.SequenceMapping 114 --> 114
protocols.comparative_modeling.util: id.SequenceMapping 115 --> 115
protocols.comparative_modeling.util: id.SequenceMapping 116 --> 116
protocols.comparative_modeling.util: id.SequenceMapping 117 --> 117
protocols.comparative_modeling.util: id.SequenceMapping 118 --> 118
protocols.comparative_modeling.util: id.SequenceMapping 119 --> 119
protocols.comparative_modeling.util: id.SequenceMapping 120 --> 120
protocols.comparative_modeling.util: id.SequenceMapping 121 --> 121
protocols.comparative_modeling.util: id.SequenceMapping 122 --> 122
protocols.comparative_modeling.util: id.SequenceMapping 123 --> 123
protocols.comparative_modeling.util: id.SequenceMapping 124 --> 124
protocols.comparative_modeling.util: id.SequenceMapping 125 --> 125
protocols.comparative_modeling.util: id.SequenceMapping 126 --> 126
protocols.comparative_modeling.util: id.SequenceMapping 127 --> 127
protocols.comparative_modeling.util: id.SequenceMapping 128 --> 128
protocols.comparative_modeling.util: id.SequenceMapping 129 --> 129
protocols.comparative_modeling.util: id.SequenceMapping 130 --> 130
protocols.comparative_modeling.util: id.SequenceMapping 131 --> 131
protocols.comparative_modeling.util: id.SequenceMapping 132 --> 132
protocols.comparative_modeling.util: id.SequenceMapping 133 --> 133
protocols.comparative_modeling.util: id.SequenceMapping 134 --> 134
protocols.comparative_modeling.util: id.SequenceMapping 135 --> 135
protocols.comparative_modeling.util: id.SequenceMapping 136 --> 136
protocols.comparative_modeling.util: id.SequenceMapping 137 --> 137
protocols.comparative_modeling.util: id.SequenceMapping 138 --> 138
protocols.comparative_modeling.util: id.SequenceMapping 139 --> 139
protocols.comparative_modeling.util: id.SequenceMapping 140 --> 140
protocols.comparative_modeling.util: id.SequenceMapping 141 --> 141
protocols.comparative_modeling.util: id.SequenceMapping 142 --> 142
protocols.comparative_modeling.util: id.SequenceMapping 143 --> 143
protocols.comparative_modeling.util: id.SequenceMapping 144 --> 144
protocols.comparative_modeling.util: id.SequenceMapping 145 --> 145
protocols.comparative_modeling.util: id.SequenceMapping 146 --> 146
protocols.comparative_modeling.util: id.SequenceMapping 147 --> 147
protocols.comparative_modeling.util: id.SequenceMapping 148 --> 148
protocols.comparative_modeling.util: id.SequenceMapping 149 --> 149
protocols.comparative_modeling.util: id.SequenceMapping 150 --> 150
protocols.comparative_modeling.util: id.SequenceMapping 151 --> 151
protocols.comparative_modeling.util: id.SequenceMapping 152 --> 152
protocols.comparative_modeling.util: id.SequenceMapping 153 --> 153
protocols.comparative_modeling.util: id.SequenceMapping 154 --> 154
protocols.comparative_modeling.util: id.SequenceMapping 155 --> 155
protocols.comparative_modeling.util: id.SequenceMapping 156 --> 156
protocols.comparative_modeling.util: id.SequenceMapping 157 --> 157
protocols.comparative_modeling.util: id.SequenceMapping 158 --> 158
protocols.comparative_modeling.util: id.SequenceMapping 159 --> 159
protocols.comparative_modeling.util: id.SequenceMapping 160 --> 160
protocols.comparative_modeling.util: id.SequenceMapping 161 --> 161
protocols.comparative_modeling.util: id.SequenceMapping 162 --> 162
protocols.comparative_modeling.util: id.SequenceMapping 163 --> 163
protocols.comparative_modeling.util: id.SequenceMapping 164 --> 164
protocols.comparative_modeling.util: id.SequenceMapping 165 --> 165
protocols.comparative_modeling.util: id.SequenceMapping 166 --> 166
protocols.comparative_modeling.util: id.SequenceMapping 167 --> 167
protocols.comparative_modeling.util: id.SequenceMapping 168 --> 168
protocols.comparative_modeling.util: id.SequenceMapping 169 --> 169
protocols.comparative_modeling.util: id.SequenceMapping 170 --> 170
protocols.comparative_modeling.util: id.SequenceMapping 171 --> 171
protocols.comparative_modeling.util: id.SequenceMapping 172 --> 172
protocols.comparative_modeling.util: id.SequenceMapping 173 --> 173
protocols.comparative_modeling.util: id.SequenceMapping 174 --> 174
protocols.comparative_modeling.util: id.SequenceMapping 175 --> 175
protocols.comparative_modeling.util: id.SequenceMapping 176 --> 176
protocols.comparative_modeling.util: id.SequenceMapping 177 --> 177
protocols.comparative_modeling.util: id.SequenceMapping 178 --> 178
protocols.comparative_modeling.util: id.SequenceMapping 179 --> 179
protocols.comparative_modeling.util: id.SequenceMapping 180 --> 180
protocols.comparative_modeling.util: id.SequenceMapping 181 --> 181
protocols.comparative_modeling.util: id.SequenceMapping 182 --> 182
protocols.comparative_modeling.util: id.SequenceMapping 183 --> 183
protocols.comparative_modeling.util: id.SequenceMapping 184 --> 184
protocols.comparative_modeling.util: id.SequenceMapping 185 --> 185
protocols.comparative_modeling.util: id.SequenceMapping 186 --> 186
protocols.comparative_modeling.util: id.SequenceMapping 187 --> 187
protocols.comparative_modeling.util: id.SequenceMapping 188 --> 188
protocols.comparative_modeling.util: id.SequenceMapping 189 --> 189
protocols.comparative_modeling.util: id.SequenceMapping 190 --> 190
protocols.comparative_modeling.util: id.SequenceMapping 191 --> 191
protocols.comparative_modeling.util: id.SequenceMapping 192 --> 192
protocols.comparative_modeling.util: id.SequenceMapping 193 --> 193
protocols.comparative_modeling.util: id.SequenceMapping 194 --> 194
protocols.comparative_modeling.util: id.SequenceMapping 195 --> 195
protocols.comparative_modeling.util: id.SequenceMapping 196 --> 196
protocols.comparative_modeling.util: id.SequenceMapping 197 --> 197
protocols.comparative_modeling.util: id.SequenceMapping 198 --> 198
protocols.comparative_modeling.util: id.SequenceMapping 199 --> 199
protocols.comparative_modeling.util: id.SequenceMapping 200 --> 200
protocols.comparative_modeling.util: id.SequenceMapping 201 --> 201
protocols.comparative_modeling.util: id.SequenceMapping 202 --> 202
protocols.comparative_modeling.util: id.SequenceMapping 203 --> 203
protocols.comparative_modeling.util: id.SequenceMapping 204 --> 204
protocols.comparative_modeling.util: id.SequenceMapping 205 --> 205
protocols.comparative_modeling.util: id.SequenceMapping 206 --> 206
protocols.comparative_modeling.util: id.SequenceMapping 207 --> 207
protocols.comparative_modeling.util: id.SequenceMapping 208 --> 208
protocols.comparative_modeling.util: id.SequenceMapping 209 --> 209
protocols.comparative_modeling.util: id.SequenceMapping 210 --> 210
protocols.comparative_modeling.util: id.SequenceMapping 211 --> 211
protocols.comparative_modeling.util: id.SequenceMapping 212 --> 212
protocols.comparative_modeling.util: id.SequenceMapping 213 --> 213
protocols.comparative_modeling.util: id.SequenceMapping 214 --> 214
protocols.comparative_modeling.util: No unaligned residues, no loops found.
protocols.threading: loops to be rebuilt are: 
protocols.threading: 0xc4ed180
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
core.chemical: New atom type: Nbb N
core.chemical: New atom type: CAbb C
core.chemical: New atom type: CB C
core.chemical: New atom type: CObb C
core.chemical: New atom type: OCbb O
core.chemical: New atom type: HNbb H
core.chemical: New atom type: CEN_ALA X
core.chemical: New atom type: CEN_CYS X
core.chemical: New atom type: CEN_ASP X
core.chemical: New atom type: CEN_GLU X
core.chemical: New atom type: CEN_PHE X
core.chemical: New atom type: CEN_GLY X
core.chemical: New atom type: CEN_HIS X
core.chemical: New atom type: CEN_ILE X
core.chemical: New atom type: CEN_LYS X
core.chemical: New atom type: CEN_LEU X
core.chemical: New atom type: CEN_MET X
core.chemical: New atom type: CEN_ASN X
core.chemical: New atom type: CEN_PRO X
core.chemical: New atom type: CEN_GLN X
core.chemical: New atom type: CEN_ARG X
core.chemical: New atom type: CEN_SER X
core.chemical: New atom type: CEN_THR X
core.chemical: New atom type: CEN_VAL X
core.chemical: New atom type: CEN_TRP X
core.chemical: New atom type: CEN_TYR X
core.chemical: New atom type: REPLS Z
core.chemical: New atom type: HREPS Z
core.chemical: New atom type: VIRT X
core.chemical: New atom type: SUCK Z
core.chemical: New atom type: MPct X
core.chemical: New atom type: MPnm X
core.chemical: New atom type: MPdp X
core.chemical: New atom type: MPtk X
core.chemical: New atom type: Phos P
core.chemical: New atom type: OOC O
core.chemical: New atom type: ONH2 O
core.chemical: New atom type: CH2 C
core.chemical: New atom type: CH1 C
core.chemical: New atom type: OH O
core.chemical: New atom type: Ntrp N
core.chemical: New atom type: aroC C
core.chemical: New atom type: Nhis N
core.chemical: New atom type: NH2O N
core.chemical: New atom type: Hapo H
core.chemical: New atom type: Hpol H
core.chemical: New atom type: Haro H
core.chemical: New atom type: CH3 C
core.chemical: New atom type: Mg2p MG
core.chemical: New atom type: Ca2p CA
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp
protocols.looprelax: ==== Loop protocol: =================================================
protocols.looprelax:  remodel        quick_ccd
protocols.looprelax:  intermedrelax  no
protocols.looprelax:  refine         refine_ccd
protocols.looprelax:  relax          no
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.looprelax: picking loops by chainbreak score.
protocols.comparative_modeling.util: No chainbreaks found, so not picking any loops!
protocols.comparative_modeling.util: No unaligned residues, no loops found.
protocols.looprelax: no loops found.
protocols.looprelax: 0xc4ed180
core.chemical.ChemicalManager: CHEMICAL_MANAGER: read residue types: centroid
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/CtermProtein.txt
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ALA to: ALA:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ARG to: ARG:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASN to: ASN:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASP to: ASP:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYS to: CYS:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYD to: CYD:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYZ to: CYZ:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLN to: GLN:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLU to: GLU:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLY to: GLY:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS to: HIS:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS_D to: HIS_D:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ILE to: ILE:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LEU to: LEU:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LYS to: LYS:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: MET to: MET:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PHE to: PHE:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PRO to: PRO:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: SER to: SER:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: THR to: THR:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TRP to: TRP:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TYR to: TYR:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: VAL to: VAL:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:CtermProteinFull
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:CtermProteinFull
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/NtermProtein.txt
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ALA to: ALA:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ARG to: ARG:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASN to: ASN:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASP to: ASP:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYS to: CYS:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYD to: CYD:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYZ to: CYZ:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLN to: GLN:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLU to: GLU:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLY to: GLY:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS to: HIS:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS_D to: HIS_D:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ILE to: ILE:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LEU to: LEU:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LYS to: LYS:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: MET to: MET:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PHE to: PHE:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PRO to: PRO:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: SER to: SER:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: THR to: THR:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TRP to: TRP:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TYR to: TYR:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: VAL to: VAL:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:CtermProteinFull to: ALA:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:CtermProteinFull to: ARG:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:CtermProteinFull to: ASN:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:CtermProteinFull to: ASP:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:CtermProteinFull to: CYS:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:CtermProteinFull to: CYD:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:CtermProteinFull to: CYZ:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:CtermProteinFull to: GLN:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:CtermProteinFull to: GLU:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:CtermProteinFull to: GLY:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:CtermProteinFull to: HIS:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:CtermProteinFull to: HIS_D:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:CtermProteinFull to: ILE:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:CtermProteinFull to: LEU:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:CtermProteinFull to: LYS:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:CtermProteinFull to: MET:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:CtermProteinFull to: PHE:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:CtermProteinFull to: PRO:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:CtermProteinFull to: SER:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:CtermProteinFull to: THR:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:CtermProteinFull to: TRP:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:CtermProteinFull to: TYR:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:CtermProteinFull to: VAL:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:CtermProteinFull to: STAPLE08A:CtermProteinFull:NtermProteinFull
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:CtermProteinFull to: STAPLE08B:CtermProteinFull:NtermProteinFull
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/protein_cutpoint_upper.txt
core.chemical: successfully patched: ALA to: ALA:protein_cutpoint_upper
core.chemical: successfully patched: ARG to: ARG:protein_cutpoint_upper
core.chemical: successfully patched: ASN to: ASN:protein_cutpoint_upper
core.chemical: successfully patched: ASP to: ASP:protein_cutpoint_upper
core.chemical: successfully patched: CYS to: CYS:protein_cutpoint_upper
core.chemical: successfully patched: CYD to: CYD:protein_cutpoint_upper
core.chemical: successfully patched: CYZ to: CYZ:protein_cutpoint_upper
core.chemical: successfully patched: GLN to: GLN:protein_cutpoint_upper
core.chemical: successfully patched: GLU to: GLU:protein_cutpoint_upper
core.chemical: successfully patched: GLY to: GLY:protein_cutpoint_upper
core.chemical: successfully patched: HIS to: HIS:protein_cutpoint_upper
core.chemical: successfully patched: HIS_D to: HIS_D:protein_cutpoint_upper
core.chemical: successfully patched: ILE to: ILE:protein_cutpoint_upper
core.chemical: successfully patched: LEU to: LEU:protein_cutpoint_upper
core.chemical: successfully patched: LYS to: LYS:protein_cutpoint_upper
core.chemical: successfully patched: MET to: MET:protein_cutpoint_upper
core.chemical: successfully patched: PHE to: PHE:protein_cutpoint_upper
core.chemical: successfully patched: PRO to: PRO:protein_cutpoint_upper
core.chemical: successfully patched: SER to: SER:protein_cutpoint_upper
core.chemical: successfully patched: THR to: THR:protein_cutpoint_upper
core.chemical: successfully patched: TRP to: TRP:protein_cutpoint_upper
core.chemical: successfully patched: TYR to: TYR:protein_cutpoint_upper
core.chemical: successfully patched: VAL to: VAL:protein_cutpoint_upper
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:protein_cutpoint_upper
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:protein_cutpoint_upper
core.chemical: successfully patched: ALA:CtermProteinFull to: ALA:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: ARG:CtermProteinFull to: ARG:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: ASN:CtermProteinFull to: ASN:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: ASP:CtermProteinFull to: ASP:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: CYS:CtermProteinFull to: CYS:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: CYD:CtermProteinFull to: CYD:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: CYZ:CtermProteinFull to: CYZ:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: GLN:CtermProteinFull to: GLN:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: GLU:CtermProteinFull to: GLU:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: GLY:CtermProteinFull to: GLY:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: HIS:CtermProteinFull to: HIS:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: HIS_D:CtermProteinFull to: HIS_D:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: ILE:CtermProteinFull to: ILE:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: LEU:CtermProteinFull to: LEU:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: LYS:CtermProteinFull to: LYS:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: MET:CtermProteinFull to: MET:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: PHE:CtermProteinFull to: PHE:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: PRO:CtermProteinFull to: PRO:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: SER:CtermProteinFull to: SER:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: THR:CtermProteinFull to: THR:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: TRP:CtermProteinFull to: TRP:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: TYR:CtermProteinFull to: TYR:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: VAL:CtermProteinFull to: VAL:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: STAPLE08A:CtermProteinFull to: STAPLE08A:CtermProteinFull:protein_cutpoint_upper
core.chemical: successfully patched: STAPLE08B:CtermProteinFull to: STAPLE08B:CtermProteinFull:protein_cutpoint_upper
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/protein_cutpoint_lower.txt
core.chemical: successfully patched: ALA to: ALA:protein_cutpoint_lower
core.chemical: successfully patched: ARG to: ARG:protein_cutpoint_lower
core.chemical: successfully patched: ASN to: ASN:protein_cutpoint_lower
core.chemical: successfully patched: ASP to: ASP:protein_cutpoint_lower
core.chemical: successfully patched: CYS to: CYS:protein_cutpoint_lower
core.chemical: successfully patched: CYD to: CYD:protein_cutpoint_lower
core.chemical: successfully patched: CYZ to: CYZ:protein_cutpoint_lower
core.chemical: successfully patched: GLN to: GLN:protein_cutpoint_lower
core.chemical: successfully patched: GLU to: GLU:protein_cutpoint_lower
core.chemical: successfully patched: GLY to: GLY:protein_cutpoint_lower
core.chemical: successfully patched: HIS to: HIS:protein_cutpoint_lower
core.chemical: successfully patched: HIS_D to: HIS_D:protein_cutpoint_lower
core.chemical: successfully patched: ILE to: ILE:protein_cutpoint_lower
core.chemical: successfully patched: LEU to: LEU:protein_cutpoint_lower
core.chemical: successfully patched: LYS to: LYS:protein_cutpoint_lower
core.chemical: successfully patched: MET to: MET:protein_cutpoint_lower
core.chemical: successfully patched: PHE to: PHE:protein_cutpoint_lower
core.chemical: successfully patched: PRO to: PRO:protein_cutpoint_lower
core.chemical: successfully patched: SER to: SER:protein_cutpoint_lower
core.chemical: successfully patched: THR to: THR:protein_cutpoint_lower
core.chemical: successfully patched: TRP to: TRP:protein_cutpoint_lower
core.chemical: successfully patched: TYR to: TYR:protein_cutpoint_lower
core.chemical: successfully patched: VAL to: VAL:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:protein_cutpoint_lower
core.chemical: successfully patched: ALA:NtermProteinFull to: ALA:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: ARG:NtermProteinFull to: ARG:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: ASN:NtermProteinFull to: ASN:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: ASP:NtermProteinFull to: ASP:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: CYS:NtermProteinFull to: CYS:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: CYD:NtermProteinFull to: CYD:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: CYZ:NtermProteinFull to: CYZ:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: GLN:NtermProteinFull to: GLN:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: GLU:NtermProteinFull to: GLU:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: GLY:NtermProteinFull to: GLY:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: HIS:NtermProteinFull to: HIS:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: HIS_D:NtermProteinFull to: HIS_D:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: ILE:NtermProteinFull to: ILE:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: LEU:NtermProteinFull to: LEU:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: LYS:NtermProteinFull to: LYS:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: MET:NtermProteinFull to: MET:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: PHE:NtermProteinFull to: PHE:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: PRO:NtermProteinFull to: PRO:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: SER:NtermProteinFull to: SER:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: THR:NtermProteinFull to: THR:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: TRP:NtermProteinFull to: TRP:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: TYR:NtermProteinFull to: TYR:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: VAL:NtermProteinFull to: VAL:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08A:NtermProteinFull to: STAPLE08A:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08B:NtermProteinFull to: STAPLE08B:NtermProteinFull:protein_cutpoint_lower
core.chemical: successfully patched: ALA:protein_cutpoint_upper to: ALA:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: ARG:protein_cutpoint_upper to: ARG:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: ASN:protein_cutpoint_upper to: ASN:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: ASP:protein_cutpoint_upper to: ASP:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: CYS:protein_cutpoint_upper to: CYS:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: CYD:protein_cutpoint_upper to: CYD:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: CYZ:protein_cutpoint_upper to: CYZ:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: GLN:protein_cutpoint_upper to: GLN:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: GLU:protein_cutpoint_upper to: GLU:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: GLY:protein_cutpoint_upper to: GLY:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: HIS:protein_cutpoint_upper to: HIS:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: HIS_D:protein_cutpoint_upper to: HIS_D:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: ILE:protein_cutpoint_upper to: ILE:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: LEU:protein_cutpoint_upper to: LEU:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: LYS:protein_cutpoint_upper to: LYS:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: MET:protein_cutpoint_upper to: MET:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: PHE:protein_cutpoint_upper to: PHE:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: PRO:protein_cutpoint_upper to: PRO:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: SER:protein_cutpoint_upper to: SER:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: THR:protein_cutpoint_upper to: THR:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: TRP:protein_cutpoint_upper to: TRP:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: TYR:protein_cutpoint_upper to: TYR:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: VAL:protein_cutpoint_upper to: VAL:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08A:protein_cutpoint_upper to: STAPLE08A:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: successfully patched: STAPLE08B:protein_cutpoint_upper to: STAPLE08B:protein_cutpoint_upper:protein_cutpoint_lower
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/VirtualBB.txt
core.chemical: successfully patched: ALA to: ALA:ProteinVirtBB
core.chemical: successfully patched: ARG to: ARG:ProteinVirtBB
core.chemical: successfully patched: ASN to: ASN:ProteinVirtBB
core.chemical: successfully patched: ASP to: ASP:ProteinVirtBB
core.chemical: successfully patched: CYS to: CYS:ProteinVirtBB
core.chemical: successfully patched: CYD to: CYD:ProteinVirtBB
core.chemical: successfully patched: CYZ to: CYZ:ProteinVirtBB
core.chemical: successfully patched: GLN to: GLN:ProteinVirtBB
core.chemical: successfully patched: GLU to: GLU:ProteinVirtBB
core.chemical: successfully patched: GLY to: GLY:ProteinVirtBB
core.chemical: successfully patched: HIS to: HIS:ProteinVirtBB
core.chemical: successfully patched: HIS_D to: HIS_D:ProteinVirtBB
core.chemical: successfully patched: ILE to: ILE:ProteinVirtBB
core.chemical: successfully patched: LEU to: LEU:ProteinVirtBB
core.chemical: successfully patched: LYS to: LYS:ProteinVirtBB
core.chemical: successfully patched: MET to: MET:ProteinVirtBB
core.chemical: successfully patched: PHE to: PHE:ProteinVirtBB
core.chemical: successfully patched: PRO to: PRO:ProteinVirtBB
core.chemical: successfully patched: SER to: SER:ProteinVirtBB
core.chemical: successfully patched: THR to: THR:ProteinVirtBB
core.chemical: successfully patched: TRP to: TRP:ProteinVirtBB
core.chemical: successfully patched: TYR to: TYR:ProteinVirtBB
core.chemical: successfully patched: VAL to: VAL:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:ProteinVirtBB
core.chemical: successfully patched: ALA:CtermProteinFull to: ALA:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ARG:CtermProteinFull to: ARG:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASN:CtermProteinFull to: ASN:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASP:CtermProteinFull to: ASP:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYS:CtermProteinFull to: CYS:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYD:CtermProteinFull to: CYD:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYZ:CtermProteinFull to: CYZ:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLN:CtermProteinFull to: GLN:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLU:CtermProteinFull to: GLU:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLY:CtermProteinFull to: GLY:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS:CtermProteinFull to: HIS:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS_D:CtermProteinFull to: HIS_D:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ILE:CtermProteinFull to: ILE:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LEU:CtermProteinFull to: LEU:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LYS:CtermProteinFull to: LYS:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: MET:CtermProteinFull to: MET:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PHE:CtermProteinFull to: PHE:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PRO:CtermProteinFull to: PRO:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: SER:CtermProteinFull to: SER:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: THR:CtermProteinFull to: THR:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TRP:CtermProteinFull to: TRP:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TYR:CtermProteinFull to: TYR:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: VAL:CtermProteinFull to: VAL:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:CtermProteinFull to: STAPLE08A:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:CtermProteinFull to: STAPLE08B:CtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ALA:NtermProteinFull to: ALA:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ARG:NtermProteinFull to: ARG:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASN:NtermProteinFull to: ASN:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASP:NtermProteinFull to: ASP:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYS:NtermProteinFull to: CYS:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYD:NtermProteinFull to: CYD:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYZ:NtermProteinFull to: CYZ:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLN:NtermProteinFull to: GLN:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLU:NtermProteinFull to: GLU:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLY:NtermProteinFull to: GLY:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS:NtermProteinFull to: HIS:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS_D:NtermProteinFull to: HIS_D:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ILE:NtermProteinFull to: ILE:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LEU:NtermProteinFull to: LEU:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LYS:NtermProteinFull to: LYS:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: MET:NtermProteinFull to: MET:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PHE:NtermProteinFull to: PHE:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PRO:NtermProteinFull to: PRO:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: SER:NtermProteinFull to: SER:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: THR:NtermProteinFull to: THR:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TRP:NtermProteinFull to: TRP:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TYR:NtermProteinFull to: TYR:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: VAL:NtermProteinFull to: VAL:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:NtermProteinFull to: STAPLE08A:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:NtermProteinFull to: STAPLE08B:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ALA:CtermProteinFull:NtermProteinFull to: ALA:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ARG:CtermProteinFull:NtermProteinFull to: ARG:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASN:CtermProteinFull:NtermProteinFull to: ASN:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ASP:CtermProteinFull:NtermProteinFull to: ASP:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYS:CtermProteinFull:NtermProteinFull to: CYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYD:CtermProteinFull:NtermProteinFull to: CYD:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: CYZ:CtermProteinFull:NtermProteinFull to: CYZ:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLN:CtermProteinFull:NtermProteinFull to: GLN:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLU:CtermProteinFull:NtermProteinFull to: GLU:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: GLY:CtermProteinFull:NtermProteinFull to: GLY:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS:CtermProteinFull:NtermProteinFull to: HIS:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: HIS_D:CtermProteinFull:NtermProteinFull to: HIS_D:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ILE:CtermProteinFull:NtermProteinFull to: ILE:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LEU:CtermProteinFull:NtermProteinFull to: LEU:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: LYS:CtermProteinFull:NtermProteinFull to: LYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: MET:CtermProteinFull:NtermProteinFull to: MET:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PHE:CtermProteinFull:NtermProteinFull to: PHE:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: PRO:CtermProteinFull:NtermProteinFull to: PRO:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull to: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull to: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TRP:CtermProteinFull:NtermProteinFull to: TRP:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: TYR:CtermProteinFull:NtermProteinFull to: TYR:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: VAL:CtermProteinFull:NtermProteinFull to: VAL:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:CtermProteinFull:NtermProteinFull to: STAPLE08A:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:CtermProteinFull:NtermProteinFull to: STAPLE08B:CtermProteinFull:NtermProteinFull:ProteinVirtBB
core.chemical: successfully patched: ALA:protein_cutpoint_upper to: ALA:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ARG:protein_cutpoint_upper to: ARG:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ASN:protein_cutpoint_upper to: ASN:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ASP:protein_cutpoint_upper to: ASP:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYS:protein_cutpoint_upper to: CYS:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYD:protein_cutpoint_upper to: CYD:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYZ:protein_cutpoint_upper to: CYZ:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLN:protein_cutpoint_upper to: GLN:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLU:protein_cutpoint_upper to: GLU:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLY:protein_cutpoint_upper to: GLY:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: HIS:protein_cutpoint_upper to: HIS:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: HIS_D:protein_cutpoint_upper to: HIS_D:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ILE:protein_cutpoint_upper to: ILE:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: LEU:protein_cutpoint_upper to: LEU:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: LYS:protein_cutpoint_upper to: LYS:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: MET:protein_cutpoint_upper to: MET:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: PHE:protein_cutpoint_upper to: PHE:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: PRO:protein_cutpoint_upper to: PRO:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: SER:protein_cutpoint_upper to: SER:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: THR:protein_cutpoint_upper to: THR:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: TRP:protein_cutpoint_upper to: TRP:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: TYR:protein_cutpoint_upper to: TYR:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: VAL:protein_cutpoint_upper to: VAL:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:protein_cutpoint_upper to: STAPLE08A:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:protein_cutpoint_upper to: STAPLE08B:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ALA:CtermProteinFull:protein_cutpoint_upper to: ALA:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ARG:CtermProteinFull:protein_cutpoint_upper to: ARG:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ASN:CtermProteinFull:protein_cutpoint_upper to: ASN:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ASP:CtermProteinFull:protein_cutpoint_upper to: ASP:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYS:CtermProteinFull:protein_cutpoint_upper to: CYS:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYD:CtermProteinFull:protein_cutpoint_upper to: CYD:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: CYZ:CtermProteinFull:protein_cutpoint_upper to: CYZ:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLN:CtermProteinFull:protein_cutpoint_upper to: GLN:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLU:CtermProteinFull:protein_cutpoint_upper to: GLU:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: GLY:CtermProteinFull:protein_cutpoint_upper to: GLY:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: HIS:CtermProteinFull:protein_cutpoint_upper to: HIS:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: HIS_D:CtermProteinFull:protein_cutpoint_upper to: HIS_D:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ILE:CtermProteinFull:protein_cutpoint_upper to: ILE:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: LEU:CtermProteinFull:protein_cutpoint_upper to: LEU:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: LYS:CtermProteinFull:protein_cutpoint_upper to: LYS:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: MET:CtermProteinFull:protein_cutpoint_upper to: MET:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: PHE:CtermProteinFull:protein_cutpoint_upper to: PHE:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: PRO:CtermProteinFull:protein_cutpoint_upper to: PRO:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: SER:CtermProteinFull:protein_cutpoint_upper to: SER:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: THR:CtermProteinFull:protein_cutpoint_upper to: THR:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: TRP:CtermProteinFull:protein_cutpoint_upper to: TRP:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: TYR:CtermProteinFull:protein_cutpoint_upper to: TYR:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: VAL:CtermProteinFull:protein_cutpoint_upper to: VAL:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:CtermProteinFull:protein_cutpoint_upper to: STAPLE08A:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:CtermProteinFull:protein_cutpoint_upper to: STAPLE08B:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB
core.chemical: successfully patched: ALA:protein_cutpoint_lower to: ALA:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ARG:protein_cutpoint_lower to: ARG:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASN:protein_cutpoint_lower to: ASN:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASP:protein_cutpoint_lower to: ASP:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYS:protein_cutpoint_lower to: CYS:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYD:protein_cutpoint_lower to: CYD:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYZ:protein_cutpoint_lower to: CYZ:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLN:protein_cutpoint_lower to: GLN:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLU:protein_cutpoint_lower to: GLU:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLY:protein_cutpoint_lower to: GLY:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS:protein_cutpoint_lower to: HIS:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS_D:protein_cutpoint_lower to: HIS_D:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ILE:protein_cutpoint_lower to: ILE:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LEU:protein_cutpoint_lower to: LEU:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LYS:protein_cutpoint_lower to: LYS:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: MET:protein_cutpoint_lower to: MET:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PHE:protein_cutpoint_lower to: PHE:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PRO:protein_cutpoint_lower to: PRO:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: SER:protein_cutpoint_lower to: SER:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: THR:protein_cutpoint_lower to: THR:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TRP:protein_cutpoint_lower to: TRP:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TYR:protein_cutpoint_lower to: TYR:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: VAL:protein_cutpoint_lower to: VAL:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:protein_cutpoint_lower to: STAPLE08A:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:protein_cutpoint_lower to: STAPLE08B:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ALA:NtermProteinFull:protein_cutpoint_lower to: ALA:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ARG:NtermProteinFull:protein_cutpoint_lower to: ARG:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASN:NtermProteinFull:protein_cutpoint_lower to: ASN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASP:NtermProteinFull:protein_cutpoint_lower to: ASP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYS:NtermProteinFull:protein_cutpoint_lower to: CYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYD:NtermProteinFull:protein_cutpoint_lower to: CYD:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYZ:NtermProteinFull:protein_cutpoint_lower to: CYZ:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLN:NtermProteinFull:protein_cutpoint_lower to: GLN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLU:NtermProteinFull:protein_cutpoint_lower to: GLU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLY:NtermProteinFull:protein_cutpoint_lower to: GLY:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS:NtermProteinFull:protein_cutpoint_lower to: HIS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS_D:NtermProteinFull:protein_cutpoint_lower to: HIS_D:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ILE:NtermProteinFull:protein_cutpoint_lower to: ILE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LEU:NtermProteinFull:protein_cutpoint_lower to: LEU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LYS:NtermProteinFull:protein_cutpoint_lower to: LYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: MET:NtermProteinFull:protein_cutpoint_lower to: MET:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PHE:NtermProteinFull:protein_cutpoint_lower to: PHE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PRO:NtermProteinFull:protein_cutpoint_lower to: PRO:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower to: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower to: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TRP:NtermProteinFull:protein_cutpoint_lower to: TRP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TYR:NtermProteinFull:protein_cutpoint_lower to: TYR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: VAL:NtermProteinFull:protein_cutpoint_lower to: VAL:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:protein_cutpoint_lower to: STAPLE08A:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:protein_cutpoint_lower to: STAPLE08B:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ALA:protein_cutpoint_upper:protein_cutpoint_lower to: ALA:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ARG:protein_cutpoint_upper:protein_cutpoint_lower to: ARG:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASN:protein_cutpoint_upper:protein_cutpoint_lower to: ASN:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ASP:protein_cutpoint_upper:protein_cutpoint_lower to: ASP:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYS:protein_cutpoint_upper:protein_cutpoint_lower to: CYS:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYD:protein_cutpoint_upper:protein_cutpoint_lower to: CYD:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: CYZ:protein_cutpoint_upper:protein_cutpoint_lower to: CYZ:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLN:protein_cutpoint_upper:protein_cutpoint_lower to: GLN:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLU:protein_cutpoint_upper:protein_cutpoint_lower to: GLU:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: GLY:protein_cutpoint_upper:protein_cutpoint_lower to: GLY:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS:protein_cutpoint_upper:protein_cutpoint_lower to: HIS:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: HIS_D:protein_cutpoint_upper:protein_cutpoint_lower to: HIS_D:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: ILE:protein_cutpoint_upper:protein_cutpoint_lower to: ILE:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LEU:protein_cutpoint_upper:protein_cutpoint_lower to: LEU:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: LYS:protein_cutpoint_upper:protein_cutpoint_lower to: LYS:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: MET:protein_cutpoint_upper:protein_cutpoint_lower to: MET:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PHE:protein_cutpoint_upper:protein_cutpoint_lower to: PHE:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: PRO:protein_cutpoint_upper:protein_cutpoint_lower to: PRO:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: SER:protein_cutpoint_upper:protein_cutpoint_lower to: SER:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: THR:protein_cutpoint_upper:protein_cutpoint_lower to: THR:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TRP:protein_cutpoint_upper:protein_cutpoint_lower to: TRP:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: TYR:protein_cutpoint_upper:protein_cutpoint_lower to: TYR:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: VAL:protein_cutpoint_upper:protein_cutpoint_lower to: VAL:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08A:protein_cutpoint_upper:protein_cutpoint_lower to: STAPLE08A:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: successfully patched: STAPLE08B:protein_cutpoint_upper:protein_cutpoint_lower to: STAPLE08B:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/protein_centroid_with_HA.txt
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/VirtualNterm.txt
core.chemical: successfully patched: ALA:NtermProteinFull to: ALA:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ARG:NtermProteinFull to: ARG:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ASN:NtermProteinFull to: ASN:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ASP:NtermProteinFull to: ASP:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYS:NtermProteinFull to: CYS:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYD:NtermProteinFull to: CYD:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYZ:NtermProteinFull to: CYZ:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLN:NtermProteinFull to: GLN:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLU:NtermProteinFull to: GLU:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLY:NtermProteinFull to: GLY:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: HIS:NtermProteinFull to: HIS:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: HIS_D:NtermProteinFull to: HIS_D:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ILE:NtermProteinFull to: ILE:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: LEU:NtermProteinFull to: LEU:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: LYS:NtermProteinFull to: LYS:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: MET:NtermProteinFull to: MET:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: PHE:NtermProteinFull to: PHE:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: PRO:NtermProteinFull to: PRO:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: SER:NtermProteinFull to: SER:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: THR:NtermProteinFull to: THR:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: TRP:NtermProteinFull to: TRP:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: TYR:NtermProteinFull to: TYR:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: VAL:NtermProteinFull to: VAL:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: STAPLE08A:NtermProteinFull to: STAPLE08A:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: STAPLE08B:NtermProteinFull to: STAPLE08B:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ALA:CtermProteinFull:NtermProteinFull to: ALA:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ARG:CtermProteinFull:NtermProteinFull to: ARG:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ASN:CtermProteinFull:NtermProteinFull to: ASN:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ASP:CtermProteinFull:NtermProteinFull to: ASP:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYS:CtermProteinFull:NtermProteinFull to: CYS:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYD:CtermProteinFull:NtermProteinFull to: CYD:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: CYZ:CtermProteinFull:NtermProteinFull to: CYZ:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLN:CtermProteinFull:NtermProteinFull to: GLN:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLU:CtermProteinFull:NtermProteinFull to: GLU:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: GLY:CtermProteinFull:NtermProteinFull to: GLY:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: HIS:CtermProteinFull:NtermProteinFull to: HIS:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: HIS_D:CtermProteinFull:NtermProteinFull to: HIS_D:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ILE:CtermProteinFull:NtermProteinFull to: ILE:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: LEU:CtermProteinFull:NtermProteinFull to: LEU:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: LYS:CtermProteinFull:NtermProteinFull to: LYS:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: MET:CtermProteinFull:NtermProteinFull to: MET:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: PHE:CtermProteinFull:NtermProteinFull to: PHE:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: PRO:CtermProteinFull:NtermProteinFull to: PRO:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull to: SER:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull to: THR:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: TRP:CtermProteinFull:NtermProteinFull to: TRP:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: TYR:CtermProteinFull:NtermProteinFull to: TYR:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: VAL:CtermProteinFull:NtermProteinFull to: VAL:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: STAPLE08A:CtermProteinFull:NtermProteinFull to: STAPLE08A:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: STAPLE08B:CtermProteinFull:NtermProteinFull to: STAPLE08B:CtermProteinFull:NtermProteinFull:VirtualNterm
core.chemical: successfully patched: ALA:NtermProteinFull:protein_cutpoint_lower to: ALA:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: ARG:NtermProteinFull:protein_cutpoint_lower to: ARG:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: ASN:NtermProteinFull:protein_cutpoint_lower to: ASN:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: ASP:NtermProteinFull:protein_cutpoint_lower to: ASP:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: CYS:NtermProteinFull:protein_cutpoint_lower to: CYS:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: CYD:NtermProteinFull:protein_cutpoint_lower to: CYD:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: CYZ:NtermProteinFull:protein_cutpoint_lower to: CYZ:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: GLN:NtermProteinFull:protein_cutpoint_lower to: GLN:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: GLU:NtermProteinFull:protein_cutpoint_lower to: GLU:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: GLY:NtermProteinFull:protein_cutpoint_lower to: GLY:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: HIS:NtermProteinFull:protein_cutpoint_lower to: HIS:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: HIS_D:NtermProteinFull:protein_cutpoint_lower to: HIS_D:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: ILE:NtermProteinFull:protein_cutpoint_lower to: ILE:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: LEU:NtermProteinFull:protein_cutpoint_lower to: LEU:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: LYS:NtermProteinFull:protein_cutpoint_lower to: LYS:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: MET:NtermProteinFull:protein_cutpoint_lower to: MET:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: PHE:NtermProteinFull:protein_cutpoint_lower to: PHE:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: PRO:NtermProteinFull:protein_cutpoint_lower to: PRO:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower to: SER:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower to: THR:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: TRP:NtermProteinFull:protein_cutpoint_lower to: TRP:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: TYR:NtermProteinFull:protein_cutpoint_lower to: TYR:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: VAL:NtermProteinFull:protein_cutpoint_lower to: VAL:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:protein_cutpoint_lower to: STAPLE08A:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:protein_cutpoint_lower to: STAPLE08B:NtermProteinFull:protein_cutpoint_lower:VirtualNterm
core.chemical: successfully patched: ALA:NtermProteinFull:ProteinVirtBB to: ALA:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ARG:NtermProteinFull:ProteinVirtBB to: ARG:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASN:NtermProteinFull:ProteinVirtBB to: ASN:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASP:NtermProteinFull:ProteinVirtBB to: ASP:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYS:NtermProteinFull:ProteinVirtBB to: CYS:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYD:NtermProteinFull:ProteinVirtBB to: CYD:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYZ:NtermProteinFull:ProteinVirtBB to: CYZ:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLN:NtermProteinFull:ProteinVirtBB to: GLN:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLU:NtermProteinFull:ProteinVirtBB to: GLU:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLY:NtermProteinFull:ProteinVirtBB to: GLY:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS:NtermProteinFull:ProteinVirtBB to: HIS:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS_D:NtermProteinFull:ProteinVirtBB to: HIS_D:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ILE:NtermProteinFull:ProteinVirtBB to: ILE:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LEU:NtermProteinFull:ProteinVirtBB to: LEU:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LYS:NtermProteinFull:ProteinVirtBB to: LYS:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: MET:NtermProteinFull:ProteinVirtBB to: MET:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PHE:NtermProteinFull:ProteinVirtBB to: PHE:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PRO:NtermProteinFull:ProteinVirtBB to: PRO:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB to: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB to: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TRP:NtermProteinFull:ProteinVirtBB to: TRP:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TYR:NtermProteinFull:ProteinVirtBB to: TYR:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: VAL:NtermProteinFull:ProteinVirtBB to: VAL:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:ProteinVirtBB to: STAPLE08A:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:ProteinVirtBB to: STAPLE08B:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ALA:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: ALA:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ARG:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: ARG:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASN:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: ASN:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASP:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: ASP:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: CYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYD:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: CYD:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYZ:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: CYZ:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLN:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: GLN:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLU:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: GLU:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLY:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: GLY:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: HIS:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS_D:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: HIS_D:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ILE:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: ILE:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LEU:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: LEU:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: LYS:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: MET:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: MET:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PHE:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: PHE:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PRO:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: PRO:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TRP:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: TRP:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TYR:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: TYR:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: VAL:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: VAL:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08A:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: STAPLE08A:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08B:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: STAPLE08B:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ALA:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: ALA:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ARG:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: ARG:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: ASN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ASP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: ASP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: CYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYD:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: CYD:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: CYZ:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: CYZ:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: GLN:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: GLU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: GLY:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: GLY:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: HIS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: HIS_D:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: HIS_D:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: ILE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: ILE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LEU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: LEU:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: LYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: LYS:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: MET:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: MET:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PHE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: PHE:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: PRO:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: PRO:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TRP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: TRP:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: TYR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: TYR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: VAL:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: VAL:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: STAPLE08A:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: STAPLE08B:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/N_acetylated.txt
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ALA to: ALA:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ARG to: ARG:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASN to: ASN:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASP to: ASP:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYS to: CYS:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYD to: CYD:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYZ to: CYZ:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLN to: GLN:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLU to: GLU:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLY to: GLY:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS to: HIS:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS_D to: HIS_D:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ILE to: ILE:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LEU to: LEU:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LYS to: LYS:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: MET to: MET:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PHE to: PHE:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PRO to: PRO:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: SER to: SER:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: THR to: THR:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TRP to: TRP:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TYR to: TYR:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: VAL to: VAL:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:CtermProteinFull to: ALA:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:CtermProteinFull to: ARG:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:CtermProteinFull to: ASN:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:CtermProteinFull to: ASP:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:CtermProteinFull to: CYS:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:CtermProteinFull to: CYD:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:CtermProteinFull to: CYZ:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:CtermProteinFull to: GLN:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:CtermProteinFull to: GLU:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:CtermProteinFull to: GLY:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:CtermProteinFull to: HIS:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:CtermProteinFull to: HIS_D:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:CtermProteinFull to: ILE:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:CtermProteinFull to: LEU:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:CtermProteinFull to: LYS:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:CtermProteinFull to: MET:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:CtermProteinFull to: PHE:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:CtermProteinFull to: PRO:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:CtermProteinFull to: SER:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:CtermProteinFull to: THR:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:CtermProteinFull to: TRP:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:CtermProteinFull to: TYR:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:CtermProteinFull to: VAL:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:CtermProteinFull to: STAPLE08A:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:CtermProteinFull to: STAPLE08B:CtermProteinFull:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ALA:ProteinVirtBB to: ALA:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ARG:ProteinVirtBB to: ARG:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASN:ProteinVirtBB to: ASN:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ASP:ProteinVirtBB to: ASP:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYS:ProteinVirtBB to: CYS:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYD:ProteinVirtBB to: CYD:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYZ:ProteinVirtBB to: CYZ:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLN:ProteinVirtBB to: GLN:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLU:ProteinVirtBB to: GLU:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GLY:ProteinVirtBB to: GLY:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS:ProteinVirtBB to: HIS:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: HIS_D:ProteinVirtBB to: HIS_D:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ILE:ProteinVirtBB to: ILE:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LEU:ProteinVirtBB to: LEU:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: LYS:ProteinVirtBB to: LYS:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: MET:ProteinVirtBB to: MET:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PHE:ProteinVirtBB to: PHE:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: PRO:ProteinVirtBB to: PRO:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: SER:ProteinVirtBB to: SER:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: THR:ProteinVirtBB to: THR:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TRP:ProteinVirtBB to: TRP:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: TYR:ProteinVirtBB to: TYR:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: VAL:ProteinVirtBB to: VAL:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08A:ProteinVirtBB to: STAPLE08A:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: STAPLE08B:ProteinVirtBB to: STAPLE08B:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:CtermProteinFull:ProteinVirtBB to: ALA:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:CtermProteinFull:ProteinVirtBB to: ARG:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:CtermProteinFull:ProteinVirtBB to: ASN:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:CtermProteinFull:ProteinVirtBB to: ASP:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:CtermProteinFull:ProteinVirtBB to: CYS:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:CtermProteinFull:ProteinVirtBB to: CYD:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:CtermProteinFull:ProteinVirtBB to: CYZ:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:CtermProteinFull:ProteinVirtBB to: GLN:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:CtermProteinFull:ProteinVirtBB to: GLU:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:CtermProteinFull:ProteinVirtBB to: GLY:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:CtermProteinFull:ProteinVirtBB to: HIS:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:CtermProteinFull:ProteinVirtBB to: HIS_D:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:CtermProteinFull:ProteinVirtBB to: ILE:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:CtermProteinFull:ProteinVirtBB to: LEU:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:CtermProteinFull:ProteinVirtBB to: LYS:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:CtermProteinFull:ProteinVirtBB to: MET:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:CtermProteinFull:ProteinVirtBB to: PHE:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:CtermProteinFull:ProteinVirtBB to: PRO:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:CtermProteinFull:ProteinVirtBB to: SER:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:CtermProteinFull:ProteinVirtBB to: THR:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:CtermProteinFull:ProteinVirtBB to: TRP:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:CtermProteinFull:ProteinVirtBB to: TYR:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:CtermProteinFull:ProteinVirtBB to: VAL:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:CtermProteinFull:ProteinVirtBB to: STAPLE08A:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:CtermProteinFull:ProteinVirtBB to: STAPLE08B:CtermProteinFull:ProteinVirtBB:N_acetylated
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/C_methylamidated.txt
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ALA to: ALA:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ARG to: ARG:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASN to: ASN:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASP to: ASP:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYS to: CYS:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYD to: CYD:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYZ to: CYZ:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLN to: GLN:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLU to: GLU:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLY to: GLY:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS to: HIS:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS_D to: HIS_D:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ILE to: ILE:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LEU to: LEU:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LYS to: LYS:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: MET to: MET:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PHE to: PHE:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PRO to: PRO:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: SER to: SER:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: THR to: THR:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TRP to: TRP:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TYR to: TYR:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: VAL to: VAL:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08A to: STAPLE08A:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08B to: STAPLE08B:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:NtermProteinFull to: ALA:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:NtermProteinFull to: ARG:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:NtermProteinFull to: ASN:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:NtermProteinFull to: ASP:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:NtermProteinFull to: CYS:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:NtermProteinFull to: CYD:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:NtermProteinFull to: CYZ:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:NtermProteinFull to: GLN:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:NtermProteinFull to: GLU:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:NtermProteinFull to: GLY:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:NtermProteinFull to: HIS:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:NtermProteinFull to: HIS_D:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:NtermProteinFull to: ILE:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:NtermProteinFull to: LEU:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:NtermProteinFull to: LYS:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:NtermProteinFull to: MET:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:NtermProteinFull to: PHE:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:NtermProteinFull to: PRO:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:NtermProteinFull to: SER:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:NtermProteinFull to: THR:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:NtermProteinFull to: TRP:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:NtermProteinFull to: TYR:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:NtermProteinFull to: VAL:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:NtermProteinFull to: STAPLE08A:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:NtermProteinFull to: STAPLE08B:NtermProteinFull:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ALA:ProteinVirtBB to: ALA:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ARG:ProteinVirtBB to: ARG:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASN:ProteinVirtBB to: ASN:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ASP:ProteinVirtBB to: ASP:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYS:ProteinVirtBB to: CYS:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYD:ProteinVirtBB to: CYD:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYZ:ProteinVirtBB to: CYZ:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLN:ProteinVirtBB to: GLN:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLU:ProteinVirtBB to: GLU:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GLY:ProteinVirtBB to: GLY:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS:ProteinVirtBB to: HIS:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: HIS_D:ProteinVirtBB to: HIS_D:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ILE:ProteinVirtBB to: ILE:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LEU:ProteinVirtBB to: LEU:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: LYS:ProteinVirtBB to: LYS:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: MET:ProteinVirtBB to: MET:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PHE:ProteinVirtBB to: PHE:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: PRO:ProteinVirtBB to: PRO:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: SER:ProteinVirtBB to: SER:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: THR:ProteinVirtBB to: THR:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TRP:ProteinVirtBB to: TRP:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: TYR:ProteinVirtBB to: TYR:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: VAL:ProteinVirtBB to: VAL:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08A:ProteinVirtBB to: STAPLE08A:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: STAPLE08B:ProteinVirtBB to: STAPLE08B:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:NtermProteinFull:ProteinVirtBB to: ALA:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:NtermProteinFull:ProteinVirtBB to: ARG:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:NtermProteinFull:ProteinVirtBB to: ASN:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:NtermProteinFull:ProteinVirtBB to: ASP:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:NtermProteinFull:ProteinVirtBB to: CYS:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:NtermProteinFull:ProteinVirtBB to: CYD:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:NtermProteinFull:ProteinVirtBB to: CYZ:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:NtermProteinFull:ProteinVirtBB to: GLN:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:NtermProteinFull:ProteinVirtBB to: GLU:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:NtermProteinFull:ProteinVirtBB to: GLY:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:NtermProteinFull:ProteinVirtBB to: HIS:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:NtermProteinFull:ProteinVirtBB to: HIS_D:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:NtermProteinFull:ProteinVirtBB to: ILE:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:NtermProteinFull:ProteinVirtBB to: LEU:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:NtermProteinFull:ProteinVirtBB to: LYS:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:NtermProteinFull:ProteinVirtBB to: MET:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:NtermProteinFull:ProteinVirtBB to: PHE:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:NtermProteinFull:ProteinVirtBB to: PRO:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB to: SER:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB to: THR:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:NtermProteinFull:ProteinVirtBB to: TRP:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:NtermProteinFull:ProteinVirtBB to: TYR:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:NtermProteinFull:ProteinVirtBB to: VAL:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:ProteinVirtBB to: STAPLE08A:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:ProteinVirtBB to: STAPLE08B:NtermProteinFull:ProteinVirtBB:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:NtermProteinFull:VirtualNterm to: ALA:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:NtermProteinFull:VirtualNterm to: ARG:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:NtermProteinFull:VirtualNterm to: ASN:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:NtermProteinFull:VirtualNterm to: ASP:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:NtermProteinFull:VirtualNterm to: CYS:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:NtermProteinFull:VirtualNterm to: CYD:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:NtermProteinFull:VirtualNterm to: CYZ:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:NtermProteinFull:VirtualNterm to: GLN:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:NtermProteinFull:VirtualNterm to: GLU:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:NtermProteinFull:VirtualNterm to: GLY:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:NtermProteinFull:VirtualNterm to: HIS:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:NtermProteinFull:VirtualNterm to: HIS_D:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:NtermProteinFull:VirtualNterm to: ILE:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:NtermProteinFull:VirtualNterm to: LEU:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:NtermProteinFull:VirtualNterm to: LYS:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:NtermProteinFull:VirtualNterm to: MET:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:NtermProteinFull:VirtualNterm to: PHE:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:NtermProteinFull:VirtualNterm to: PRO:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:NtermProteinFull:VirtualNterm to: SER:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:NtermProteinFull:VirtualNterm to: THR:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:NtermProteinFull:VirtualNterm to: TRP:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:NtermProteinFull:VirtualNterm to: TYR:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:NtermProteinFull:VirtualNterm to: VAL:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:VirtualNterm to: STAPLE08A:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:VirtualNterm to: STAPLE08B:NtermProteinFull:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:NtermProteinFull:ProteinVirtBB:VirtualNterm to: ALA:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:NtermProteinFull:ProteinVirtBB:VirtualNterm to: ARG:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:NtermProteinFull:ProteinVirtBB:VirtualNterm to: ASN:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:NtermProteinFull:ProteinVirtBB:VirtualNterm to: ASP:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:NtermProteinFull:ProteinVirtBB:VirtualNterm to: CYS:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:NtermProteinFull:ProteinVirtBB:VirtualNterm to: CYD:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:NtermProteinFull:ProteinVirtBB:VirtualNterm to: CYZ:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:NtermProteinFull:ProteinVirtBB:VirtualNterm to: GLN:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:NtermProteinFull:ProteinVirtBB:VirtualNterm to: GLU:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:NtermProteinFull:ProteinVirtBB:VirtualNterm to: GLY:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:NtermProteinFull:ProteinVirtBB:VirtualNterm to: HIS:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:NtermProteinFull:ProteinVirtBB:VirtualNterm to: HIS_D:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:NtermProteinFull:ProteinVirtBB:VirtualNterm to: ILE:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:NtermProteinFull:ProteinVirtBB:VirtualNterm to: LEU:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:NtermProteinFull:ProteinVirtBB:VirtualNterm to: LYS:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:NtermProteinFull:ProteinVirtBB:VirtualNterm to: MET:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:NtermProteinFull:ProteinVirtBB:VirtualNterm to: PHE:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:NtermProteinFull:ProteinVirtBB:VirtualNterm to: PRO:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm to: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm to: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:NtermProteinFull:ProteinVirtBB:VirtualNterm to: TRP:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:NtermProteinFull:ProteinVirtBB:VirtualNterm to: TYR:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:NtermProteinFull:ProteinVirtBB:VirtualNterm to: VAL:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:NtermProteinFull:ProteinVirtBB:VirtualNterm to: STAPLE08A:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:NtermProteinFull:ProteinVirtBB:VirtualNterm to: STAPLE08B:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:N_acetylated to: ALA:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:N_acetylated to: ARG:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:N_acetylated to: ASN:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:N_acetylated to: ASP:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:N_acetylated to: CYS:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:N_acetylated to: CYD:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:N_acetylated to: CYZ:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:N_acetylated to: GLN:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:N_acetylated to: GLU:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:N_acetylated to: GLY:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:N_acetylated to: HIS:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:N_acetylated to: HIS_D:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:N_acetylated to: ILE:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:N_acetylated to: LEU:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:N_acetylated to: LYS:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:N_acetylated to: MET:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:N_acetylated to: PHE:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:N_acetylated to: PRO:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:N_acetylated to: SER:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:N_acetylated to: THR:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:N_acetylated to: TRP:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:N_acetylated to: TYR:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:N_acetylated to: VAL:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:N_acetylated to: STAPLE08A:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:N_acetylated to: STAPLE08B:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ALA:ProteinVirtBB:N_acetylated to: ALA:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ARG:ProteinVirtBB:N_acetylated to: ARG:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASN:ProteinVirtBB:N_acetylated to: ASN:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ASP:ProteinVirtBB:N_acetylated to: ASP:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYS:ProteinVirtBB:N_acetylated to: CYS:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYD:ProteinVirtBB:N_acetylated to: CYD:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYZ:ProteinVirtBB:N_acetylated to: CYZ:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLN:ProteinVirtBB:N_acetylated to: GLN:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLU:ProteinVirtBB:N_acetylated to: GLU:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GLY:ProteinVirtBB:N_acetylated to: GLY:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS:ProteinVirtBB:N_acetylated to: HIS:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: HIS_D:ProteinVirtBB:N_acetylated to: HIS_D:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ILE:ProteinVirtBB:N_acetylated to: ILE:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LEU:ProteinVirtBB:N_acetylated to: LEU:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: LYS:ProteinVirtBB:N_acetylated to: LYS:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: MET:ProteinVirtBB:N_acetylated to: MET:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PHE:ProteinVirtBB:N_acetylated to: PHE:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: PRO:ProteinVirtBB:N_acetylated to: PRO:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: SER:ProteinVirtBB:N_acetylated to: SER:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THR:ProteinVirtBB:N_acetylated to: THR:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TRP:ProteinVirtBB:N_acetylated to: TRP:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: TYR:ProteinVirtBB:N_acetylated to: TYR:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: VAL:ProteinVirtBB:N_acetylated to: VAL:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08A:ProteinVirtBB:N_acetylated to: STAPLE08A:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: STAPLE08B:ProteinVirtBB:N_acetylated to: STAPLE08B:ProteinVirtBB:N_acetylated:C_methylamidated
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/ser_phosphorylated.txt
core.chemical: successfully patched: SER to: SER:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull to: SER:CtermProteinFull:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull to: SER:NtermProteinFull:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull to: SER:CtermProteinFull:NtermProteinFull:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_upper to: SER:protein_cutpoint_upper:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:protein_cutpoint_upper to: SER:CtermProteinFull:protein_cutpoint_upper:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_lower to: SER:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower to: SER:NtermProteinFull:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_upper:protein_cutpoint_lower to: SER:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: SER:ProteinVirtBB to: SER:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:ProteinVirtBB to: SER:CtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB to: SER:NtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_upper:ProteinVirtBB to: SER:protein_cutpoint_upper:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB to: SER:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_lower:ProteinVirtBB to: SER:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB to: SER:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:VirtualNterm to: SER:NtermProteinFull:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull:VirtualNterm to: SER:CtermProteinFull:NtermProteinFull:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower:VirtualNterm to: SER:NtermProteinFull:protein_cutpoint_lower:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm to: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm to: SER:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm to: SER:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: SER:N_acetylated to: SER:N_acetylated:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:N_acetylated to: SER:CtermProteinFull:N_acetylated:phosphorylated
core.chemical: successfully patched: SER:ProteinVirtBB:N_acetylated to: SER:ProteinVirtBB:N_acetylated:phosphorylated
core.chemical: successfully patched: SER:CtermProteinFull:ProteinVirtBB:N_acetylated to: SER:CtermProteinFull:ProteinVirtBB:N_acetylated:phosphorylated
core.chemical: successfully patched: SER:C_methylamidated to: SER:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:C_methylamidated to: SER:NtermProteinFull:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:ProteinVirtBB:C_methylamidated to: SER:ProteinVirtBB:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB:C_methylamidated to: SER:NtermProteinFull:ProteinVirtBB:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:VirtualNterm:C_methylamidated to: SER:NtermProteinFull:VirtualNterm:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated to: SER:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:N_acetylated:C_methylamidated to: SER:N_acetylated:C_methylamidated:phosphorylated
core.chemical: successfully patched: SER:ProteinVirtBB:N_acetylated:C_methylamidated to: SER:ProteinVirtBB:N_acetylated:C_methylamidated:phosphorylated
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/thr_phosphorylated.txt
core.chemical: successfully patched: THR to: THR:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull to: THR:CtermProteinFull:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull to: THR:NtermProteinFull:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull to: THR:CtermProteinFull:NtermProteinFull:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_upper to: THR:protein_cutpoint_upper:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:protein_cutpoint_upper to: THR:CtermProteinFull:protein_cutpoint_upper:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_lower to: THR:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower to: THR:NtermProteinFull:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_upper:protein_cutpoint_lower to: THR:protein_cutpoint_upper:protein_cutpoint_lower:phosphorylated
core.chemical: successfully patched: THR:ProteinVirtBB to: THR:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:ProteinVirtBB to: THR:CtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB to: THR:NtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB to: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_upper:ProteinVirtBB to: THR:protein_cutpoint_upper:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB to: THR:CtermProteinFull:protein_cutpoint_upper:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_lower:ProteinVirtBB to: THR:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB to: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB to: THR:protein_cutpoint_upper:protein_cutpoint_lower:ProteinVirtBB:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:VirtualNterm to: THR:NtermProteinFull:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull:VirtualNterm to: THR:CtermProteinFull:NtermProteinFull:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower:VirtualNterm to: THR:NtermProteinFull:protein_cutpoint_lower:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm to: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm to: THR:CtermProteinFull:NtermProteinFull:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm to: THR:NtermProteinFull:protein_cutpoint_lower:ProteinVirtBB:VirtualNterm:phosphorylated
core.chemical: successfully patched: THR:N_acetylated to: THR:N_acetylated:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:N_acetylated to: THR:CtermProteinFull:N_acetylated:phosphorylated
core.chemical: successfully patched: THR:ProteinVirtBB:N_acetylated to: THR:ProteinVirtBB:N_acetylated:phosphorylated
core.chemical: successfully patched: THR:CtermProteinFull:ProteinVirtBB:N_acetylated to: THR:CtermProteinFull:ProteinVirtBB:N_acetylated:phosphorylated
core.chemical: successfully patched: THR:C_methylamidated to: THR:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:C_methylamidated to: THR:NtermProteinFull:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:ProteinVirtBB:C_methylamidated to: THR:ProteinVirtBB:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB:C_methylamidated to: THR:NtermProteinFull:ProteinVirtBB:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:VirtualNterm:C_methylamidated to: THR:NtermProteinFull:VirtualNterm:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated to: THR:NtermProteinFull:ProteinVirtBB:VirtualNterm:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:N_acetylated:C_methylamidated to: THR:N_acetylated:C_methylamidated:phosphorylated
core.chemical: successfully patched: THR:ProteinVirtBB:N_acetylated:C_methylamidated to: THR:ProteinVirtBB:N_acetylated:C_methylamidated:phosphorylated
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/ShoveBB.txt
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/nucleic/dna/LowerDNA.txt
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: ADE to: ADE:LowerDNA
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: THY to: THY:LowerDNA
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: CYT to: CYT:LowerDNA
core.chemical.ResidueType: ERASING LOWER_CONNECT: 1 lcid: 2
core.chemical: successfully patched: GUA to: GUA:LowerDNA
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/nucleic/dna/UpperDNA.txt
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: ADE to: ADE:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: THY to: THY:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: CYT to: CYT:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 2 lcid: 1
core.chemical: successfully patched: GUA to: GUA:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: ADE:LowerDNA to: ADE:LowerDNA:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: THY:LowerDNA to: THY:LowerDNA:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: CYT:LowerDNA to: CYT:LowerDNA:UpperDNA
core.chemical.ResidueType: ERASING UPPER_CONNECT: 1 lcid: 0
core.chemical: successfully patched: GUA:LowerDNA to: GUA:LowerDNA:UpperDNA
core.chemical: Reading patch file: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/chemical/residue_type_sets/centroid/patches/nucleic/dna/VirtualDNAPhosphate.txt
core.chemical: successfully patched: ADE to: ADE:VirtualDNAPhosphate
core.chemical: successfully patched: THY to: THY:VirtualDNAPhosphate
core.chemical: successfully patched: CYT to: CYT:VirtualDNAPhosphate
core.chemical: successfully patched: GUA to: GUA:VirtualDNAPhosphate
core.chemical: successfully patched: ADE:LowerDNA to: ADE:LowerDNA:VirtualDNAPhosphate
core.chemical: successfully patched: THY:LowerDNA to: THY:LowerDNA:VirtualDNAPhosphate
core.chemical: successfully patched: CYT:LowerDNA to: CYT:LowerDNA:VirtualDNAPhosphate
core.chemical: successfully patched: GUA:LowerDNA to: GUA:LowerDNA:VirtualDNAPhosphate
core.chemical: successfully patched: ADE:UpperDNA to: ADE:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: THY:UpperDNA to: THY:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: CYT:UpperDNA to: CYT:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: GUA:UpperDNA to: GUA:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: ADE:LowerDNA:UpperDNA to: ADE:LowerDNA:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: THY:LowerDNA:UpperDNA to: THY:LowerDNA:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: CYT:LowerDNA:UpperDNA to: CYT:LowerDNA:UpperDNA:VirtualDNAPhosphate
core.chemical: successfully patched: GUA:LowerDNA:UpperDNA to: GUA:LowerDNA:UpperDNA:VirtualDNAPhosphate
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set.  Created 1010 residue types
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Initial Building     
protocols.looprelax: ===
protocols.loops.loop_mover.perturb.LoopMover_Perturb_QuickCCD: ALL_LOOPS:LOOP  begin  end  cut  skip_rate  extended
protocols.loops.loop_mover.perturb.LoopMover_Perturb_QuickCCD: 
protocols.loops.loop_mover.perturb.LoopMover_Perturb_QuickCCD: SELECTEDLOOPS:LOOP  begin  end  cut  skip_rate  extended
protocols.loops.loop_mover.perturb.LoopMover_Perturb_QuickCCD: 
protocols::checkpoint: Deleting checkpoints of InitialBuild
protocols.looprelax: Buildtime: 0
protocols.looprelax: FOLD_TREE  EDGE 1 214 -1 
protocols.looprelax: 
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Fullatom 
protocols.looprelax: ===
protocols.looprelax: Annotated sequence before fa switch: D[ASP:NtermProteinFull]IQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC[CYS:CtermProteinFull]
protocols.looprelax: Copying sidechain from template: 1
protocols.looprelax: Copying sidechain from template: 2
protocols.looprelax: Copying sidechain from template: 3
protocols.looprelax: Copying sidechain from template: 4
protocols.looprelax: Copying sidechain from template: 5
protocols.looprelax: Copying sidechain from template: 6
protocols.looprelax: Copying sidechain from template: 7
protocols.looprelax: Copying sidechain from template: 8
protocols.looprelax: Copying sidechain from template: 9
protocols.looprelax: Copying sidechain from template: 10
protocols.looprelax: Copying sidechain from template: 11
protocols.looprelax: Copying sidechain from template: 12
protocols.looprelax: Copying sidechain from template: 13
protocols.looprelax: Copying sidechain from template: 14
protocols.looprelax: Copying sidechain from template: 15
protocols.looprelax: Copying sidechain from template: 16
protocols.looprelax: Copying sidechain from template: 17
protocols.looprelax: Copying sidechain from template: 18
protocols.looprelax: Copying sidechain from template: 19
protocols.looprelax: Copying sidechain from template: 20
protocols.looprelax: Copying sidechain from template: 21
protocols.looprelax: Copying sidechain from template: 22
protocols.looprelax: Copying sidechain from template: 23
protocols.looprelax: Missing dens: 24
protocols.looprelax: Copying sidechain from template: 25
protocols.looprelax: Copying sidechain from template: 26
protocols.looprelax: Copying sidechain from template: 27
protocols.looprelax: Missing dens: 28
protocols.looprelax: Missing dens: 29
protocols.looprelax: Missing dens: 30
protocols.looprelax: Missing dens: 31
protocols.looprelax: Missing dens: 32
protocols.looprelax: Missing dens: 33
protocols.looprelax: Copying sidechain from template: 34
protocols.looprelax: Copying sidechain from template: 35
protocols.looprelax: Copying sidechain from template: 36
protocols.looprelax: Copying sidechain from template: 37
protocols.looprelax: Copying sidechain from template: 38
protocols.looprelax: Copying sidechain from template: 39
protocols.looprelax: Copying sidechain from template: 40
protocols.looprelax: Copying sidechain from template: 41
protocols.looprelax: Copying sidechain from template: 42
protocols.looprelax: Copying sidechain from template: 43
protocols.looprelax: Copying sidechain from template: 44
protocols.looprelax: Copying sidechain from template: 45
protocols.looprelax: Missing dens: 46
protocols.looprelax: Copying sidechain from template: 47
protocols.looprelax: Copying sidechain from template: 48
protocols.looprelax: Copying sidechain from template: 49
protocols.looprelax: Missing dens: 50
protocols.looprelax: Copying sidechain from template: 51
protocols.looprelax: Copying sidechain from template: 52
protocols.looprelax: Missing dens: 53
protocols.looprelax: Missing dens: 54
protocols.looprelax: Missing dens: 55
protocols.looprelax: Missing dens: 56
protocols.looprelax: Copying sidechain from template: 57
protocols.looprelax: Copying sidechain from template: 58
protocols.looprelax: Copying sidechain from template: 59
protocols.looprelax: Copying sidechain from template: 60
protocols.looprelax: Copying sidechain from template: 61
protocols.looprelax: Copying sidechain from template: 62
protocols.looprelax: Copying sidechain from template: 63
protocols.looprelax: Copying sidechain from template: 64
protocols.looprelax: Copying sidechain from template: 65
protocols.looprelax: Copying sidechain from template: 66
protocols.looprelax: Copying sidechain from template: 67
protocols.looprelax: Copying sidechain from template: 68
protocols.looprelax: Copying sidechain from template: 69
protocols.looprelax: Copying sidechain from template: 70
protocols.looprelax: Copying sidechain from template: 71
protocols.looprelax: Copying sidechain from template: 72
protocols.looprelax: Copying sidechain from template: 73
protocols.looprelax: Copying sidechain from template: 74
protocols.looprelax: Copying sidechain from template: 75
protocols.looprelax: Copying sidechain from template: 76
protocols.looprelax: Copying sidechain from template: 77
protocols.looprelax: Copying sidechain from template: 78
protocols.looprelax: Copying sidechain from template: 79
protocols.looprelax: Copying sidechain from template: 80
protocols.looprelax: Copying sidechain from template: 81
protocols.looprelax: Copying sidechain from template: 82
protocols.looprelax: Copying sidechain from template: 83
protocols.looprelax: Copying sidechain from template: 84
protocols.looprelax: Copying sidechain from template: 85
protocols.looprelax: Copying sidechain from template: 86
protocols.looprelax: Missing dens: 87
protocols.looprelax: Copying sidechain from template: 88
protocols.looprelax: Missing dens: 89
protocols.looprelax: Copying sidechain from template: 90
protocols.looprelax: Missing dens: 91
protocols.looprelax: Missing dens: 92
protocols.looprelax: Copying sidechain from template: 93
protocols.looprelax: Missing dens: 94
protocols.looprelax: Copying sidechain from template: 95
protocols.looprelax: Copying sidechain from template: 96
protocols.looprelax: Copying sidechain from template: 97
protocols.looprelax: Copying sidechain from template: 98
protocols.looprelax: Copying sidechain from template: 99
protocols.looprelax: Copying sidechain from template: 100
protocols.looprelax: Copying sidechain from template: 101
protocols.looprelax: Copying sidechain from template: 102
protocols.looprelax: Copying sidechain from template: 103
protocols.looprelax: Copying sidechain from template: 104
protocols.looprelax: Copying sidechain from template: 105
protocols.looprelax: Missing dens: 106
protocols.looprelax: Copying sidechain from template: 107
protocols.looprelax: Copying sidechain from template: 108
protocols.looprelax: Copying sidechain from template: 109
protocols.looprelax: Copying sidechain from template: 110
protocols.looprelax: Copying sidechain from template: 111
protocols.looprelax: Copying sidechain from template: 112
protocols.looprelax: Copying sidechain from template: 113
protocols.looprelax: Copying sidechain from template: 114
protocols.looprelax: Copying sidechain from template: 115
protocols.looprelax: Copying sidechain from template: 116
protocols.looprelax: Copying sidechain from template: 117
protocols.looprelax: Copying sidechain from template: 118
protocols.looprelax: Copying sidechain from template: 119
protocols.looprelax: Copying sidechain from template: 120
protocols.looprelax: Copying sidechain from template: 121
protocols.looprelax: Copying sidechain from template: 122
protocols.looprelax: Copying sidechain from template: 123
protocols.looprelax: Copying sidechain from template: 124
protocols.looprelax: Copying sidechain from template: 125
protocols.looprelax: Copying sidechain from template: 126
protocols.looprelax: Copying sidechain from template: 127
protocols.looprelax: Copying sidechain from template: 128
protocols.looprelax: Copying sidechain from template: 129
protocols.looprelax: Copying sidechain from template: 130
protocols.looprelax: Copying sidechain from template: 131
protocols.looprelax: Copying sidechain from template: 132
protocols.looprelax: Copying sidechain from template: 133
protocols.looprelax: Copying sidechain from template: 134
protocols.looprelax: Copying sidechain from template: 135
protocols.looprelax: Copying sidechain from template: 136
protocols.looprelax: Copying sidechain from template: 137
protocols.looprelax: Copying sidechain from template: 138
protocols.looprelax: Copying sidechain from template: 139
protocols.looprelax: Copying sidechain from template: 140
protocols.looprelax: Copying sidechain from template: 141
protocols.looprelax: Copying sidechain from template: 142
protocols.looprelax: Copying sidechain from template: 143
protocols.looprelax: Copying sidechain from template: 144
protocols.looprelax: Copying sidechain from template: 145
protocols.looprelax: Copying sidechain from template: 146
protocols.looprelax: Copying sidechain from template: 147
protocols.looprelax: Copying sidechain from template: 148
protocols.looprelax: Copying sidechain from template: 149
protocols.looprelax: Copying sidechain from template: 150
protocols.looprelax: Copying sidechain from template: 151
protocols.looprelax: Copying sidechain from template: 152
protocols.looprelax: Copying sidechain from template: 153
protocols.looprelax: Copying sidechain from template: 154
protocols.looprelax: Copying sidechain from template: 155
protocols.looprelax: Copying sidechain from template: 156
protocols.looprelax: Copying sidechain from template: 157
protocols.looprelax: Copying sidechain from template: 158
protocols.looprelax: Copying sidechain from template: 159
protocols.looprelax: Copying sidechain from template: 160
protocols.looprelax: Copying sidechain from template: 161
protocols.looprelax: Copying sidechain from template: 162
protocols.looprelax: Copying sidechain from template: 163
protocols.looprelax: Copying sidechain from template: 164
protocols.looprelax: Copying sidechain from template: 165
protocols.looprelax: Copying sidechain from template: 166
protocols.looprelax: Copying sidechain from template: 167
protocols.looprelax: Copying sidechain from template: 168
protocols.looprelax: Copying sidechain from template: 169
protocols.looprelax: Copying sidechain from template: 170
protocols.looprelax: Copying sidechain from template: 171
protocols.looprelax: Copying sidechain from template: 172
protocols.looprelax: Copying sidechain from template: 173
protocols.looprelax: Copying sidechain from template: 174
protocols.looprelax: Copying sidechain from template: 175
protocols.looprelax: Copying sidechain from template: 176
protocols.looprelax: Copying sidechain from template: 177
protocols.looprelax: Copying sidechain from template: 178
protocols.looprelax: Copying sidechain from template: 179
protocols.looprelax: Copying sidechain from template: 180
protocols.looprelax: Copying sidechain from template: 181
protocols.looprelax: Copying sidechain from template: 182
protocols.looprelax: Copying sidechain from template: 183
protocols.looprelax: Copying sidechain from template: 184
protocols.looprelax: Copying sidechain from template: 185
protocols.looprelax: Copying sidechain from template: 186
protocols.looprelax: Copying sidechain from template: 187
protocols.looprelax: Copying sidechain from template: 188
protocols.looprelax: Copying sidechain from template: 189
protocols.looprelax: Copying sidechain from template: 190
protocols.looprelax: Copying sidechain from template: 191
protocols.looprelax: Copying sidechain from template: 192
protocols.looprelax: Copying sidechain from template: 193
protocols.looprelax: Copying sidechain from template: 194
protocols.looprelax: Copying sidechain from template: 195
protocols.looprelax: Copying sidechain from template: 196
protocols.looprelax: Copying sidechain from template: 197
protocols.looprelax: Copying sidechain from template: 198
protocols.looprelax: Copying sidechain from template: 199
protocols.looprelax: Copying sidechain from template: 200
protocols.looprelax: Copying sidechain from template: 201
protocols.looprelax: Copying sidechain from template: 202
protocols.looprelax: Copying sidechain from template: 203
protocols.looprelax: Copying sidechain from template: 204
protocols.looprelax: Copying sidechain from template: 205
protocols.looprelax: Copying sidechain from template: 206
protocols.looprelax: Copying sidechain from template: 207
protocols.looprelax: Copying sidechain from template: 208
protocols.looprelax: Copying sidechain from template: 209
protocols.looprelax: Copying sidechain from template: 210
protocols.looprelax: Copying sidechain from template: 211
protocols.looprelax: Copying sidechain from template: 212
protocols.looprelax: Copying sidechain from template: 213
protocols.looprelax: Copying sidechain from template: 214
protocols.looprelax: Repacking required
protocols.looprelax: Detecting disulfides
protocols.looprelax: Annotated sequence before repack: D[ASP:NtermProteinFull]IQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC[CYS:CtermProteinFull]
core.conformation.Conformation: Found disulfide between residues 23 88
core.conformation.Conformation: current variant for 23 CYS
core.conformation.Conformation: current variant for 88 CYS
core.conformation.Conformation: current variant for 23 CYD
core.conformation.Conformation: current variant for 88 CYD
core.conformation.Conformation: Found disulfide between residues 134 194
core.conformation.Conformation: current variant for 134 CYS
core.conformation.Conformation: current variant for 194 CYS
core.conformation.Conformation: current variant for 134 CYD
core.conformation.Conformation: current variant for 194 CYD
core.pack.task.operation.NoRepackDisulfides: found disulfide residue 23, preventing repack at this position
core.pack.task.operation.NoRepackDisulfides: found disulfide residue 88, preventing repack at this position
core.pack.task.operation.NoRepackDisulfides: found disulfide residue 134, preventing repack at this position
core.pack.task.operation.NoRepackDisulfides: found disulfide residue 194, preventing repack at this position
core.pack.task: Packer task: initialize from command line() 
protocols.looprelax:     0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000    0.000disabling minimization on disulfide residue 23
protocols.looprelax: disabling minimization on disulfide residue 88
protocols.looprelax: disabling minimization on disulfide residue 134
protocols.looprelax: disabling minimization on disulfide residue 194
Warning: Unable to locate database file rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
core.pack.dunbrack: cannot find binary dunbrack library under name /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
core.pack.dunbrack: Reading Dunbrack Libraries
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/cys.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/ile.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/lys.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/leu.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/met.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/pro.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/arg.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/ser.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/thr.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/val.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asp.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asp.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asp.bbind.chi2.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/glu.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/glu.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/glu.bbind.chi3.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/phe.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/phe.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/phe.bbind.chi2.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/his.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/his.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/his.bbind.chi2.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asn.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asn.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/asn.bbind.chi2.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/gln.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/gln.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/gln.bbind.chi3.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/trp.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/trp.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/trp.bbind.chi2.Definitions.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/tyr.bbdep.rotamers.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/tyr.bbdep.densities.lib
core.pack.dunbrack: Reading /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/tyr.bbind.chi2.Definitions.lib
core.pack.dunbrack: Finished reading Dunbrack Libraries
core.pack.dunbrack: Dunbrack 2010 library took 924.97 seconds to load from ASCII
core.pack.dunbrack: Memory usage: 
core.pack.dunbrack: CYS with 188496 bytes
core.pack.dunbrack: ILE with 655488 bytes
core.pack.dunbrack: LYS with 6819456 bytes
core.pack.dunbrack: LEU with 655488 bytes
core.pack.dunbrack: MET with 2243184 bytes
core.pack.dunbrack: PRO with 167784 bytes
core.pack.dunbrack: ARG with 7006224 bytes
core.pack.dunbrack: SER with 188496 bytes
core.pack.dunbrack: THR with 188496 bytes
core.pack.dunbrack: VAL with 188496 bytes
core.pack.dunbrack: ASP with 5789936 bytes
core.pack.dunbrack: GLU with 17550456 bytes
core.pack.dunbrack: PHE with 5789936 bytes
core.pack.dunbrack: HIS with 6723344 bytes
core.pack.dunbrack: ASN with 6723344 bytes
core.pack.dunbrack: GLN with 20350680 bytes
core.pack.dunbrack: TRP with 6723344 bytes
core.pack.dunbrack: TYR with 5789936 bytes
core.pack.dunbrack: Total memory on Dunbrack Libraries: 93742584 bytes.
Warning: Unable to locate database file rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
Warning: Unable to locate database file rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
core.pack.dunbrack: Random tempname will be: /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/Ldun10_binary
core.pack.dunbrack: Opening file /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/Ldun10_binary for output.
core.pack.dunbrack: Moving temporary file to /home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/database/rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin
core.pack.rotamer_set.RotamerSet_: Existing residue: LYS Concrete residue: LYS Total number of rotamers suggested: 24
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -64.5493 -178.28 -179.544 179.589  Bump energy: -1.70935 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -179.081 178.039 179.688 180  Bump energy: -1.93401 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -59.0868 -66.7149 -176.067 -177.394  Bump energy: 446.698 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -65.7484 -177.481 -177.036 -64.5  Bump energy: -1.50241 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -179.715 170.671 70.9 174.383  Bump energy: -1.87053 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -64.9818 179.677 178.498 65.8  Bump energy: -0.831238 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -177.786 -176.455 -70.5 -175.7  Bump energy: -1.92664 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -177.899 175.163 176.496 64.9  Bump energy: -2.4028 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -64.0182 -176.846 -71.7 -174.887  Bump energy: -1.67777 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -65.0444 177.242 71.2868 174.903  Bump energy: -1.36234 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -177.139 178.487 -176.1 -64.7921  Bump energy: -2.23246 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -58.3937 -66.6005 -174.363 -67  Bump energy: 343.109 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: 178.811 70.8046 176.5 178.5  Bump energy: 35.336 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -59.1203 -69.153 -179.544 65.2  Bump energy: 198.946 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: -63.0971 -178.908 -74.1237 -68.8356  Bump energy: -2.21291 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: -65.3136 177.825 70.3 68.6771  Bump energy: 1.70439 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 17: -176.9 174.8 72.3903 69.2192  Bump energy: -2.03741 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 18: 62.6656 -178.4 -177.629 -179.7  Bump energy: 17.0195 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 19: -179.744 70.9445 178.544 69.1366  Bump energy: 167.525 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 20: -173.7 178.4 -68.9 -68.5  Bump energy: 6.79939 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 21: -178.1 71.4193 -179.419 -63.2  Bump energy: 28.705 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 22: -80.2244 70.2249 178.6 177.6  Bump energy: 972.56 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 23: -59.3638 -66.4179 -71.6 -176.1  Bump energy: 1183.31 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 24: -61.7598 -67.9882 -70.5 -68.2  Bump energy: 428.106 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: LYS 24
core.pack.rotamer_set.RotamerSet_: Existing residue: ASN Concrete residue: ASN Total number of rotamers suggested: 10
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -173.078 -33.9108  Bump energy: 1.18144 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -173.078 -62.9197  Bump energy: 4.67619 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -173.078 -4.33664  Bump energy: 27.3956 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -173.078 26.1348  Bump energy: 96.6538 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -173.078 -91.6088  Bump energy: 85.895 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -68.8245 -28.5822  Bump energy: 1.22265 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -173.078 54.8109  Bump energy: 119.381 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -68.8245 -56.0368  Bump energy: -1.59523 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -68.8245 -2.09089  Bump energy: 3.0049 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -173.078 -120.202  Bump energy: 277.169 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: ASN 28
core.pack.rotamer_set.RotamerSet_: Existing residue: VAL Concrete residue: VAL Total number of rotamers suggested: 1
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -64.5142  Bump energy: -3.14543 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: VAL 29
core.pack.rotamer_set.RotamerSet_: Existing residue: ARG Concrete residue: ARG Total number of rotamers suggested: 16
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -67.6046 179.342 -179.7 176.287  Bump energy: -0.0710298 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -63.7 -69.0954 -175.7 -88.3086  Bump energy: -0.221753 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -67.6046 -179 -176.5 -85.5914  Bump energy: -0.0690648 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -62.2577 -69.0914 -177.295 -176.191  Bump energy: -0.146587 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -67.1577 180 -67.5086 170.396  Bump energy: -0.285522 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -66.6046 177.8 64.6 85.1  Bump energy: -0.133383 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -61.7577 -66.3954 -65 168.791  Bump energy: -0.191291 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -66.8577 178.446 66.4 -169.091  Bump energy: -0.125335 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -175.962 178.762 66.1423 -167.229  Bump energy: 3.34416 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -177 177.796 -178.9 -87.4954  Bump energy: 4.33258 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -179.354 68.3377 -178.154 -87.9  Bump energy: 6.30505 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -61.5086 -68.2 179.4 87.5  Bump energy: -0.156401 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: -68.7623 -169.938 -63.9 -86.7  Bump energy: -0.312003 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -67.1046 -178.895 178.405 87.9046  Bump energy: -0.0914024 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: 65.1577 178.958 176.958 86.4  Bump energy: 42.9121 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: 65.7577 -175.946 -177.105 -86.0954  Bump energy: 53.6152 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: ARG 30
core.pack.rotamer_set.RotamerSet_: Existing residue: THR Concrete residue: THR Total number of rotamers suggested: 18
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: 58.7422 0  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: 58.7422 20  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: 58.7422 40  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: 58.7422 60  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: 58.7422 80  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: 58.7422 100  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: 58.7422 120  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: 58.7422 140  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: 58.7422 160  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: 58.7422 180  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: 58.7422 200  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: 58.7422 220  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: 58.7422 240  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: 58.7422 260  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: 58.7422 280  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: 58.7422 300  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 17: 58.7422 320  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 18: 58.7422 340  Bump energy: -0.889421 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: THR 31
core.pack.rotamer_set.RotamerSet_: Existing residue: VAL Concrete residue: VAL Total number of rotamers suggested: 2
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -177.55  Bump energy: 9.97505 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -62.0763  Bump energy: 38.0788 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: VAL 32
core.pack.rotamer_set.RotamerSet_: Existing residue: VAL Concrete residue: VAL Total number of rotamers suggested: 2
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: 178.889  Bump energy: 1.42098 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: 57.4741  Bump energy: 13.2781 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: VAL 33
core.pack.rotamer_set.RotamerSet_: Existing residue: THR Concrete residue: THR Total number of rotamers suggested: 36
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -58.6739 0  Bump energy: -1.08968 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -58.6739 20  Bump energy: -1.35199 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -58.6739 40  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -58.6739 60  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -58.6739 80  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -58.6739 100  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -58.6739 120  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -58.6739 140  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -58.6739 160  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -58.6739 180  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -58.6739 200  Bump energy: -1.37652 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -58.6739 220  Bump energy: -1.37631 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: -58.6739 240  Bump energy: -1.33331 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -58.6739 260  Bump energy: -0.997209 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: -58.6739 280  Bump energy: 0.265936 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: -58.6739 300  Bump energy: 2.14086 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 17: -58.6739 320  Bump energy: 1.8038 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 18: -58.6739 340  Bump energy: -0.0648758 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 19: 58.6037 0  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 20: 58.6037 20  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 21: 58.6037 40  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 22: 58.6037 60  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 23: 58.6037 80  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 24: 58.6037 100  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 25: 58.6037 120  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 26: 58.6037 140  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 27: 58.6037 160  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 28: 58.6037 180  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 29: 58.6037 200  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 30: 58.6037 220  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 31: 58.6037 240  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 32: 58.6037 260  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 33: 58.6037 280  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 34: 58.6037 300  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 35: 58.6037 320  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 36: 58.6037 340  Bump energy: 32.4464 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: THR 46
core.pack.rotamer_set.RotamerSet_: Existing residue: LEU Concrete residue: LEU Total number of rotamers suggested: 3
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -59.2863 176.3  Bump energy: 2.97441 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -79.1756 67.8244  Bump energy: 86.4122 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -179.656 62.3177  Bump energy: -1.18651 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: LEU 50
core.pack.rotamer_set.RotamerSet_: Existing residue: ASN Concrete residue: ASN Total number of rotamers suggested: 10
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -175.318 -33.4106  Bump energy: -0.800184 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -175.318 -4.33411  Bump energy: 14.535 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -66.1972 -57.091  Bump energy: -2.75358 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -66.1972 -30.1883  Bump energy: -2.67968 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -175.318 -62.2793  Bump energy: 3.16156 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -175.318 25.286  Bump energy: 220.706 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -66.1972 -84.4883  Bump energy: -2.88039 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -175.318 -91.3648  Bump energy: 51.9555 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -175.318 54.3715  Bump energy: 365.213 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -66.1972 -2.52235  Bump energy: -2.62824 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: ASN 53
core.pack.rotamer_set.RotamerSet_: Existing residue: ARG Concrete residue: ARG Total number of rotamers suggested: 38
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -176.4 176.32 179.2 -179.257  Bump energy: 1954.51 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -66.6492 177.556 -66.0904 171.953  Bump energy: 21.6832 ... replace previous
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -66.8835 179.955 -179.3 177.811  Bump energy: 384.047 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -175.353 -179.803 -64.4092 -82.2977  Bump energy: 283.118 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -178.491 175.67 -68.7 170.494  Bump energy: 689.228 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -172.12 172.651 66.9592 -168.993  Bump energy: 75.6877 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -67.0032 178.231 66.6 -173.497  Bump energy: 677.829 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -65.9041 -177.347 -177.434 -87.0752  Bump energy: 564.722 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -176.484 177.817 -178.6 -88.2659  Bump energy: 1595.9 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -65.1408 -178.655 179.715 84.2667  Bump energy: -3.40395 ... replace previous
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -176.052 176.72 177.179 87.2516  Bump energy: 2151.87 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -176.398 173.545 63.4 85.5267  Bump energy: 16.3384 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: -65.1633 177.318 65.2936 86.9794  Bump energy: 642.379 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -61.3142 -71.8148 -175.08 -179.059  Bump energy: 2168.9 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: -179 73.8444 177.5 177.492  Bump energy: 2119.04 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: -65.2798 -175.098 -64 -85.9464  Bump energy: -2.11602 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 17: -64.4105 -66.3982 -61 -84.5  Bump energy: 555.232 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 18: -175.814 177.9 -64.5592 105.221  Bump energy: 23.4832 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 19: -179.541 73.4592 66.8 -169.4  Bump energy: 1305.87 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 20: -61.9183 -67.1674 -63.8064 175.362  Bump energy: 904.935 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 21: 179.385 74.0143 -179.519 -88  Bump energy: 2605.36 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 22: -64.3101 179.71 64.9619 -106  Bump energy: 376.804 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 23: -60.6647 -68.7371 179.4 89.016  Bump energy: 1099.91 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 24: -174.639 177.841 66.7991 -107.7  Bump energy: 9.58678 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 25: -179.347 70.6693 169.92 91.0083  Bump energy: 3161.23 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 26: -68.9918 -178.368 -67.5927 106.3  Bump energy: -2.45535 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 27: -177.202 69.6138 61.2 84.5  Bump energy: 784.336 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 28: -84.4 68.2981 173.88 175.3  Bump energy: 726.319 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 29: -170.4 -86.7693 -172.533 -173.1  Bump energy: 2347.83 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 30: -62.0114 -69.1321 -174.051 -88.2074  Bump energy: 1313.8 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 31: -68.6 -78.1248 -68.1 104.389  Bump energy: 1265.73 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 32: 67.5238 -175.298 -176.841 -84.4665  Bump energy: -0.784372 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 33: 65.8914 -175.661 -67.5 171.8  Bump energy: 42.5027 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 34: 65.7413 -177.415 -179.44 -177.965  Bump energy: -1.08303 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 35: -62.1 -77.2037 72.6665 81.5978  Bump energy: 1228.69 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 36: 67.1 -179.625 68.9 -171.3  Bump energy: 6.29159 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 37: -61.3124 -67.5715 86.0161 -167.949  Bump energy: 1740.46 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 38: 67.1491 179.138 177.085 86.4408  Bump energy: -1.16211 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: ARG 54
core.pack.rotamer_set.RotamerSet_: Existing residue: HIS Concrete residue: HIS Total number of rotamers suggested: 12
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -171.918 -78.8273  Bump energy: -2.75296 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -171.918 70.4674  Bump energy: -2.84071 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -171.918 -56.5169  Bump energy: -2.58514 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -67.1607 -72.5185  Bump energy: 34.0717 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -171.918 -103.819  Bump energy: -3.046 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -171.918 94.7861  Bump energy: -1.61399 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -67.1607 -48.6532  Bump energy: 79.264 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -171.918 47.1852  Bump energy: -2.97708 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -67.1607 -98.8532  Bump energy: 26.4542 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -171.918 -137.557  Bump energy: -3.00309 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -67.1607 78.108  Bump energy: 5.16492 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -67.1607 168.12  Bump energy: 239.774 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: HIS 55
core.pack.rotamer_set.RotamerSet_: Existing residue: HIS Concrete residue: HIS_D Total number of rotamers suggested: 12
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -171.918 -78.8273  Bump energy: -3.00249 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -171.918 70.4674  Bump energy: -2.88937 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -171.918 -56.5169  Bump energy: -1.70143 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -67.1607 -72.5185  Bump energy: 32.0343 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -171.918 -103.819  Bump energy: -3.12271 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -171.918 94.7861  Bump energy: -1.59545 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -67.1607 -48.6532  Bump energy: 80.1685 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -171.918 47.1852  Bump energy: -3.01031 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -67.1607 -98.8532  Bump energy: 23.8305 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -171.918 -137.557  Bump energy: -2.96867 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -67.1607 78.108  Bump energy: 20.6284 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -67.1607 168.12  Bump energy: 243.841 ... deleted
core.pack.rotamer_set.RotamerSet_: Existing residue: THR Concrete residue: THR Total number of rotamers suggested: 54
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -59.7059 0  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -59.7059 20  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -59.7059 40  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -59.7059 60  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -59.7059 80  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -59.7059 100  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -59.7059 120  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -59.7059 140  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -59.7059 160  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -59.7059 180  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -59.7059 200  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -59.7059 220  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: -59.7059 240  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -59.7059 260  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 15: -59.7059 280  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 16: -59.7059 300  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 17: -59.7059 320  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 18: -59.7059 340  Bump energy: -0.103975 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 19: 58.3248 0  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 20: 58.3248 20  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 21: 58.3248 40  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 22: 58.3248 60  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 23: 58.3248 80  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 24: 58.3248 100  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 25: 58.3248 120  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 26: 58.3248 140  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 27: 58.3248 160  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 28: 58.3248 180  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 29: 58.3248 200  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 30: 58.3248 220  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 31: 58.3248 240  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 32: 58.3248 260  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 33: 58.3248 280  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 34: 58.3248 300  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 35: 58.3248 320  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 36: 58.3248 340  Bump energy: -0.20244 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 37: -175.796 0  Bump energy: -0.176878 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 38: -175.796 20  Bump energy: -0.220587 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 39: -175.796 40  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 40: -175.796 60  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 41: -175.796 80  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 42: -175.796 100  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 43: -175.796 120  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 44: -175.796 140  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 45: -175.796 160  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 46: -175.796 180  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 47: -175.796 200  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 48: -175.796 220  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 49: -175.796 240  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 50: -175.796 260  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 51: -175.796 280  Bump energy: -0.223279 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 52: -175.796 300  Bump energy: -0.218643 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 53: -175.796 320  Bump energy: -0.169754 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 54: -175.796 340  Bump energy: -0.127396 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: THR 56
core.pack.rotamer_set.RotamerSet_: Existing residue: PHE Concrete residue: PHE Total number of rotamers suggested: 8
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -63.2917 93.2539  Bump energy: -5.14578 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: 179.569 77.7183  Bump energy: 1590.36 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -63.2917 71.4886  Bump energy: -3.03987 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: 179.569 102.098  Bump energy: 1241.69 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: 179.569 52.2155  Bump energy: 2106 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -63.2917 119.267  Bump energy: 5.29327 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -63.2917 -27.3495  Bump energy: 51.5344 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: 179.569 22.2059  Bump energy: 2162.57 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: PHE 87
core.pack.rotamer_set.RotamerSet_: Existing residue: LEU Concrete residue: LEU Total number of rotamers suggested: 5
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: 179.775 66.1926  Bump energy: 114.37 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -176.123 151.604  Bump energy: 127.444 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -62.3842 172.808  Bump energy: 1282.64 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: 69.9148 163.736  Bump energy: 663.98 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: 61.799 82.4458  Bump energy: 911.984 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: LEU 89
core.pack.rotamer_set.RotamerSet_: Existing residue: HIS Concrete residue: HIS Total number of rotamers suggested: 7
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -63.2104 -73.1409  Bump energy: -0.673748 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -63.2104 78.8769  Bump energy: -2.5847 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -63.2104 -50.1217  Bump energy: -1.66091 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -63.2104 -98.2001  Bump energy: -2.28142 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -63.2104 103.833  Bump energy: 8.40777 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -63.2104 166.001  Bump energy: -2.30768 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -63.2104 136.201  Bump energy: -0.826085 ... added
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: HIS 91
core.pack.rotamer_set.RotamerSet_: Existing residue: HIS Concrete residue: HIS_D Total number of rotamers suggested: 7
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -63.2104 -73.1409  Bump energy: 5.33498 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -63.2104 78.8769  Bump energy: -2.61811 ... replace previous
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -63.2104 -50.1217  Bump energy: -2.06854 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -63.2104 -98.2001  Bump energy: -3.2892 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -63.2104 103.833  Bump energy: 7.00009 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -63.2104 166.001  Bump energy: -2.47959 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -63.2104 136.201  Bump energy: -1.25014 ... added
core.pack.rotamer_set.RotamerSet_: Existing residue: TRP Concrete residue: TRP Total number of rotamers suggested: 10
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: 179.93 85.3113  Bump energy: 12.2038 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: 179.93 -97.1352  Bump energy: -4.19876 ... replace previous
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: 179.93 -119.908  Bump energy: -4.49096 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -72.1523 102.336  Bump energy: 1508.27 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: 179.93 60.1783  Bump energy: 11.4794 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -72.1523 124.129  Bump energy: 1431.29 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -72.1523 -20.1659  Bump energy: 1488.56 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: 179.93 106.484  Bump energy: 280.31 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: 179.93 25.8125  Bump energy: 336.822 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: 179.93 -69.6287  Bump energy: 383.708 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: TRP 92
core.pack.rotamer_set.RotamerSet_: Existing residue: TYR Concrete residue: TYR Total number of rotamers suggested: 14
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -70.1297 95.5342 0  Bump energy: -2.39495 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -70.1297 95.5342 180  Bump energy: -2.39495 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -177.262 77.3398 0  Bump energy: 5.72114 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -177.262 77.3398 180  Bump energy: 5.72114 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 5: -70.1297 121.162 0  Bump energy: 0.0272167 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 6: -70.1297 121.162 180  Bump energy: 0.0272167 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 7: -70.1297 69.7756 0  Bump energy: -2.45401 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 8: -70.1297 69.7756 180  Bump energy: -2.45401 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 9: -177.262 53.0289 0  Bump energy: 60.2528 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 10: -177.262 53.0289 180  Bump energy: 60.2528 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 11: -177.262 100.926 0  Bump energy: 0.0556834 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 12: -177.262 100.926 180  Bump energy: 0.0556834 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 13: -70.1297 -27.3221 0  Bump energy: 31.1541 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 14: -70.1297 -27.3221 180  Bump energy: 31.1541 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: TYR 94
core.pack.rotamer_set.RotamerSet_: Existing residue: ILE Concrete residue: ILE Total number of rotamers suggested: 4
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 1: -62.8049 169.823  Bump energy: -2.56268 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 2: -58.5881 -60.3494  Bump energy: 406.418 ... deleted
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 3: -66.3237 78.7336  Bump energy: 1.74282 ... added
core.pack.rotamer_set.RotamerSet_:  Suggested rotamer 4: -170.103 166.859  Bump energy: 175.79 ... deleted
core.pack.rotamer_set.RotamerSet_:  Including current rotamer: ILE 106
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 197 rotamers at 19 positions.
core.pack.pack_rotamers: IG: 45144 bytes
core.pack.annealer.AnnealerFactory: Creating FixbbSimAnnealer
core.pack.annealer.FixbbSimAnnealer: pack_rotamers run final: KNVRTVVTLNRHTFLHWYI, best_energy: 111.799
core.optimize: AtomTreeMinimizer::run: nangles= 438 start_score:      -89.376 start_func:      -88.734 end_score:     -259.505 end_func:     -258.864
protocols.looprelax:  -259.505 -734.572   86.179  415.877    1.481  -83.889    0.761  -16.622  -83.544  -21.952  -13.407   -1.493  -14.321   25.698  206.561  -25.885   -0.379=======minirosetta.default.linuxgccdebug: src/core/kinematics/FoldTree.hh:744: int core::kinematics::FoldTree::root() const: Assertion `!empty()' failed.
=============================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Refine 
protocols.looprelax: ===
Got some signal... It is:6
Process was aborted!