-dock_pert 3 8
-spin
-detect_disulf true
-rebuild_disulf true

-ex1
-ex2aro


-detect_disulf_tolerance 1.0

-out:path:all output
-out:file:silent dock_ensemble.out
-out:file:scorefile dock_ensemble.sc

-docking_low_res_score motif_dock_score
-mh:path:scores_BB_BB /scratch/mb0261/rosetta/rosetta.source.release-314/main/database/additional_protocol_data/motif_dock/xh_16_
-mh:score:use_ss1 false
-mh:score:use_ss2 false
-mh:score:use_aa1 true
-mh:score:use_aa2 true