Last login: Sun Jun 11 10:41:42 2017 from ch2-69796.ch.biu.ac.il genesis:/home/gnss/singhma> python -V Python 2.6.6 genesis:/home/gnss/singhma> scl enable python27 bash [singhma@genesis ~]$ python -V Python 2.7.13 [singhma@genesis ~]$ gcc --version gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [singhma@genesis ~]$ scl enable devtoolset-6 bash [singhma@genesis ~]$ gcc --version gcc (GCC) 6.2.1 20160916 (Red Hat 6.2.1-3) Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [singhma@genesis ~]$ pwd /home/gnss/singhma [singhma@genesis ~]$ cd rosetta/software/rosetta_src_2017.08.59291_bundle/main/source [singhma@genesis source]$ ./scons.py -j8 mode=release bin scons: Reading SConscript files ... Running versioning script ... fatal: Not a git repository (or any of the parent directories): .git Done. (0.0 seconds) Number of option files updated: 0 Total 3922 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed scons: done reading SConscript files. scons: Building targets ... g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/apps/public/AbinitioRelax.o -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/AbinitioRelax.cc In file included from src/utility/options/Option.hh:25, from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/apps/public/AbinitioRelax.cc:20: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/apps/public/AbinitioRelax.cc:20: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/apps/public/AbinitioRelax.cc:20: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/apps/public/AbinitioRelax.cc:20: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' src/apps/public/AbinitioRelax.cc:65: error: expected ';' at end of input src/apps/public/AbinitioRelax.cc:65: error: expected '}' at end of input In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/apps/public/AbinitioRelax.cc:20: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh: At global scope: src/utility/options/ScalarOption_T_.hh:155: error: expected unqualified-id at end of input src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of input src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of input g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/init/init.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/init/init.cc g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/util.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/util.cc g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/MultiObjective.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/MultiObjective.cc g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/StructAvrgMover.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/StructAvrgMover.cc g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/Scheduler.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/Scheduler.cc g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/Clusterer.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/Clusterer.cc scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/apps/public/AbinitioRelax.o] Error 1 g++ -o build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/WorkUnit_Sampler.os -c -std=c++0x -ffor-scope -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -pipe -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/6.2 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/mpi_refinement/WorkUnit_Sampler.cc In file included from src/core/init/init.hh:22, from src/protocols/init/init.cc:17: src/numeric/random/random.hh:86: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/init/init.hh:21, from src/protocols/init/init.cc:17: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >' src/basic/Tracer.hh:120: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class std::vector, std::allocator >, std::allocator, std::allocator > > >' In file included from src/core/init/init.hh:21, from src/protocols/init/init.cc:17: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >': src/basic/Tracer.hh:120: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >' In file included from src/utility/stream_util.hh:17, from src/basic/Tracer.hh:444, from src/basic/datacache/DataMap.hh:18, from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:28, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: src/utility/stream_util.fwd.hh:36: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:41: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:45: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:49: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:53: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:60: error: 'nullptr' was not declared in this scope In file included from src/utility/stream_util.hh:19, from src/basic/Tracer.hh:444, from src/basic/datacache/DataMap.hh:18, from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:28, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: src/utility/type_traits.hh:41: error: expected constructor, destructor, or type conversion before 'bool' src/utility/type_traits.hh:48: error: 'has_insertion_operator' was not declared in this scope src/utility/type_traits.hh:48: error: expected primary-expression before '>' token src/utility/type_traits.hh:48: error: expected primary-expression before ')' token In file included from src/basic/datacache/DataMap.hh:18, from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:28, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: src/basic/Tracer.hh:448: error: 'nullptr' was not declared in this scope src/basic/Tracer.hh:455: error: 'nullptr' was not declared in this scope In file included from src/basic/datacache/DataMap.hh:24, from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:28, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/options/Option.hh:25, from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/util.cc:10: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/util.cc:10: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/util.cc:10: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:28, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: src/basic/datacache/DataMap.hh:43: error: expected ';' before 'override' src/basic/datacache/DataMap.hh: In member function 'Ty basic::datacache::DataMap::get(const std::string&, const std::string&) const': src/basic/datacache/DataMap.hh:98: error: expected initializer before ':' token In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/smart_ptr/shared_ptr.hpp:31, from external/boost_1_55_0/boost/shared_ptr.hpp:17, from src/protocols/moves/Mover.fwd.hh:19, from src/protocols/moves/Mover.hh:28, from src/protocols/sewing/sampling/requirements/GlobalRequirement.hh:29, from src/protocols/sewing/sampling/requirements/RequirementFactory.hh:22, from src/protocols/init/init.RequirementCreators.ihh:11, from src/protocols/init/init.cc:21: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected primary-expression before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected primary-expression before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ')' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected primary-expression before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp: At global scope: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected declaration before end of line In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/util.cc:10: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/init/init.os] Error 1 In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/util.cc:10: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/util.cc:10: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/util.cc:10: external/boost_1_55_0/boost/exception/exception.hpp: At global scope: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected unqualified-id before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected declaration before end of line scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/util.os] Error 1 In file included from src/utility/options/Option.hh:25, from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/MultiObjective.cc:14: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/MultiObjective.cc:14: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/MultiObjective.cc:14: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >' src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class std::vector, std::allocator >, std::allocator, std::allocator > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >': src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >' In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/MultiObjective.cc:14: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' In file included from src/numeric/trig.functions.hh:34, from src/numeric/xyzVector.hh:32, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/MultiObjective.cc:14: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/MultiObjective.cc:14: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/MultiObjective.cc:14: external/boost_1_55_0/boost/exception/exception.hpp: At global scope: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected unqualified-id before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected declaration before end of line In file included from src/utility/stream_util.hh:17, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/stream_util.fwd.hh:36: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:41: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:45: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:49: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:53: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:60: error: 'nullptr' was not declared in this scope In file included from src/utility/stream_util.hh:19, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/type_traits.hh:41: error: expected constructor, destructor, or type conversion before 'bool' src/utility/type_traits.hh:48: error: 'has_insertion_operator' was not declared in this scope src/utility/type_traits.hh:48: error: expected primary-expression before '>' token src/utility/type_traits.hh:48: error: expected primary-expression before ')' token scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/MultiObjective.os] Error 1 In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >' src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class std::vector, std::allocator >, std::allocator, std::allocator > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >': src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >' In file included from src/numeric/trig.functions.hh:34, from src/numeric/xyzVector.hh:32, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/stream_util.hh:17, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/stream_util.fwd.hh:36: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:41: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:45: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:49: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:53: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:60: error: 'nullptr' was not declared in this scope In file included from src/utility/options/Option.hh:25, from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Clusterer.cc:14: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/stream_util.hh:19, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/type_traits.hh:41: error: expected constructor, destructor, or type conversion before 'bool' src/utility/type_traits.hh:48: error: 'has_insertion_operator' was not declared in this scope src/utility/type_traits.hh:48: error: expected primary-expression before '>' token src/utility/type_traits.hh:48: error: expected primary-expression before ')' token In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Clusterer.cc:14: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Clusterer.cc:14: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Clusterer.cc:14: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/Clusterer.cc:14: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Clusterer.cc:14: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/Clusterer.cc:14: external/boost_1_55_0/boost/exception/exception.hpp: At global scope: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected unqualified-id before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected declaration before end of line In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, const char*, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, const char*, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, const char*, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, int, std::allocator >' In file included from src/protocols/wum/WorkUnitBase.hh:23, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/protocols/moves/Mover.hh:75: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, char, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, char, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, char, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >' src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class std::vector, std::allocator >, std::allocator, std::allocator > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator >, std::allocator, std::allocator > > >': src/core/io/silent/SilentFileOptions.hh:103: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, std::basic_string, std::allocator >, std::allocator, std::allocator > > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, long unsigned int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, long unsigned int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, long unsigned int, std::allocator >' scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/Clusterer.os] Error 1 In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/numeric/trig.functions.hh:34, from src/numeric/xyzVector.hh:32, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/wum/WorkUnitBase.hh:24, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/excn/Exceptions.hh:66: error: expected ';' before 'override' src/utility/excn/Exceptions.hh:67: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/protocols/wum/SilentStructStore.hh:50: error: expected ';' before 'override' In file included from src/utility/stream_util.hh:17, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/wum/WorkUnitBase.hh:24, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/stream_util.fwd.hh:36: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:41: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:45: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:49: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:53: error: 'nullptr' was not declared in this scope src/utility/stream_util.fwd.hh:60: error: 'nullptr' was not declared in this scope In file included from src/protocols/mpi_refinement/StructAvrgMover.hh:20, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/protocols/moves/Mover.hh:75: error: expected ';' before 'override' In file included from src/utility/signals/Link.hh:29, from src/utility/signals/SignalHub.hh:25, from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/LinkUnit.hh:75: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, const char*, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' src/utility/signals/LinkUnit.hh: In member function 'bool utility::signals::IsLinkUnitInvalid::operator()(utility::signals::LinkUnitOP&) const': src/utility/signals/LinkUnit.hh:124: error: 'nullptr' was not declared in this scope In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, const char*, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, const char*, std::allocator >' In file included from src/utility/stream_util.hh:19, from src/utility/string_util.hh:26, from src/numeric/xyzVector.hh:44, from src/numeric/xyzMatrix.hh:27, from src/core/chemical/rna/util.hh:23, from src/core/pose/rna/util.hh:18, from src/core/pose/full_model_info/FullModelParameters.hh:23, from src/core/io/silent/SilentFileData.hh:26, from src/core/io/silent/SilentStruct.hh:25, from src/protocols/wum/SilentStructStore.hh:22, from src/protocols/wum/WorkUnitBase.hh:24, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/type_traits.hh:41: error: expected constructor, destructor, or type conversion before 'bool' src/utility/type_traits.hh:48: error: 'has_insertion_operator' was not declared in this scope src/utility/type_traits.hh:48: error: expected primary-expression before '>' token src/utility/type_traits.hh:48: error: expected primary-expression before ')' token In file included from src/utility/signals/SignalHub.hh:25, from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/Link.hh: In member function 'bool utility::signals::Link::empty() const': src/utility/signals/Link.hh:108: error: 'nullptr' was not declared in this scope In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, int, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, char, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, char, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, char, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, long unsigned int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, long unsigned int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, long unsigned int, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/protocols/wum/SilentStructStore.hh:50: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, protocols::mpi_refinement::MethodParams, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/protocols/mpi_refinement/Scheduler.hh:134: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/protocols/mpi_refinement/Scheduler.hh:134: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, protocols::mpi_refinement::MethodParams, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, protocols::mpi_refinement::MethodParams, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::pair, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >' src/protocols/mpi_refinement/Scheduler.hh:157: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >::shrink_to_fit' in 'class std::vector, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/Scheduler.hh:18, from src/protocols/mpi_refinement/Scheduler.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >': src/protocols/mpi_refinement/Scheduler.hh:157: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::pair, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >::shrink_to_fit' in 'class utility::vectorL<1l, std::pair, std::allocator >, std::basic_string, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send(Signal, std::vector, std::allocator > >&) const': src/utility/signals/SignalHub.hh:344: error: expected initializer before ':' token src/utility/signals/SignalHub.hh:350: error: expected primary-expression before '}' token src/utility/signals/SignalHub.hh:350: error: expected ')' before '}' token src/utility/signals/SignalHub.hh:350: error: expected primary-expression before '}' token src/utility/signals/SignalHub.hh:350: error: expected ';' before '}' token src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::invalidate_all(std::vector, std::allocator > >&) const': src/utility/signals/SignalHub.hh:356: error: expected initializer before ':' token src/utility/signals/SignalHub.hh:360: error: expected primary-expression before '}' token src/utility/signals/SignalHub.hh:360: error: expected ';' before '}' token src/utility/signals/SignalHub.hh:360: error: expected primary-expression before '}' token src/utility/signals/SignalHub.hh:360: error: expected ')' before '}' token src/utility/signals/SignalHub.hh:360: error: expected primary-expression before '}' token src/utility/signals/SignalHub.hh:360: error: expected ';' before '}' token src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::deallocate(utility::signals::LinkUnit&) const': src/utility/signals/SignalHub.hh:380: error: 'nullptr' was not declared in this scope In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: At global scope: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/pose/Pose.hh:187: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/pose/Pose.hh:187: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/core/pose/Pose.hh:193: error: expected ';' before 'noexcept' src/core/pose/Pose.hh:194: error: expected ';' before 'noexcept' src/core/pose/Pose.hh:195: error: expected ';' before 'noexcept' src/core/pose/Pose.hh:196: error: expected ';' before 'noexcept' src/core/pose/Pose.hh:208: error: expected ';' before 'override' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Scheduler.cc:11: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Scheduler.cc:11: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Scheduler.cc:11: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/Scheduler.cc:11: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected ';' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/Scheduler.cc:11: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope In file included from external/boost_1_55_0/boost/throw_exception.hpp:43, from external/boost_1_55_0/boost/unordered/detail/unique.hpp:16, from external/boost_1_55_0/boost/unordered/unordered_set.hpp:18, from external/boost_1_55_0/boost/unordered_set.hpp:16, from external/boost_1_55_0/boost/graph/adjacency_list.hpp:21, from external/boost_1_55_0/boost/graph/undirected_graph.hpp:10, from src/core/chemical/ResidueGraphTypes.hh:37, from src/core/chemical/orbitals/ICoorOrbitalData.hh:48, from src/core/chemical/Orbital.hh:30, from src/core/conformation/Residue.hh:30, from src/core/conformation/Conformation.hh:21, from src/core/pose/util.tmpl.hh:31, from src/core/pose/util.hh:20, from src/protocols/mpi_refinement/util.hh:19, from src/protocols/mpi_refinement/Scheduler.cc:11: external/boost_1_55_0/boost/exception/exception.hpp: At global scope: external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected unqualified-id before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected '}' before end of line external/boost_1_55_0/boost/exception/exception.hpp:137: error: expected declaration before end of line In file included from src/core/scoring/ScoreFunction.hh:36, from src/protocols/mpi_refinement/StructAvrgMover.hh:22, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::zero(const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:116: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::clear()': src/core/scoring/EnergyMap.hh:150: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::dot(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&) const': src/core/scoring/EnergyMap.hh:185: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:188: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:188: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:188: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:188: error: expected ')' before 'return' src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::operator*=(core::Real)': src/core/scoring/EnergyMap.hh:214: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::accumulate(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:279: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::accumulate(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&, core::Real)': src/core/scoring/EnergyMap.hh:289: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::sum()': src/core/scoring/EnergyMap.hh:308: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:311: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:311: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:311: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:311: error: expected ')' before 'return' src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::norm_squared(const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:319: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:324: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:324: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:324: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:324: error: expected ')' before 'return' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: At global scope: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::scoring::ScoreType, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/scoring/EnergyMap.hh:344: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, const char*, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/scoring/EnergyMap.hh:344: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::scoring::ScoreType, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::scoring::ScoreType, std::allocator >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/chemical/rna/util.hh:51: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, const char*, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, const char*, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:109: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:109: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >': src/core/pose/rna/VDW_Grid.hh:106: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >::shrink_to_fit' in 'class utility::vectorL<1l, utility::vector1 >, std::allocator > > >, std::allocator >, std::allocator > > > > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:110: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:110: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:111: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:111: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:261: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, int, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:112: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, char, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:112: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:262: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, char, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, char, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:113: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:113: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:114: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:114: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/mpi_refinement/StructAvrgMover.hh:22, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/core/scoring/ScoreFunction.hh:124: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:655: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:655: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, long unsigned int, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/pose/full_model_info/FullModelParameters.hh:274: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, long unsigned int, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, long unsigned int, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:661: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:661: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:1118: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:1118: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentFileData.hh:53: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:1119: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:1119: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >, std::allocator > > >' src/core/scoring/ScoreFunction.hh:1137: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >, std::allocator > > >::shrink_to_fit' in 'class std::vector >, std::allocator > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >, std::allocator > > >': src/core/scoring/ScoreFunction.hh:1137: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, utility::vector1 >, std::allocator > > >' In file included from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/protocols/mpi_refinement/StructAvrgMover.hh:37: error: expected ';' before 'override' src/protocols/mpi_refinement/StructAvrgMover.hh:39: error: expected ';' before 'override' src/protocols/mpi_refinement/StructAvrgMover.hh:40: error: expected ';' before 'void' src/protocols/mpi_refinement/StructAvrgMover.hh:40: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::pose::Pose, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/protocols/mpi_refinement/StructAvrgMover.hh:81: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/protocols/mpi_refinement/StructAvrgMover.hh:81: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::pose::Pose, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::pose::Pose, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/io/silent/SilentStruct.hh:396: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::io::silent::SilentEnergy, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, double, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/protocols/mpi_refinement/StructAvrgMover.hh:82: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/protocols/mpi_refinement/StructAvrgMover.hh:82: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, double, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, double, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/io/silent/SilentStruct.hh:404: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/wum/WorkUnitBase.hh:24, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/protocols/wum/SilentStructStore.hh:50: error: expected ';' before 'override' In file included from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/protocols/wum/WorkUnitBase.hh:47: error: expected ';' before 'override' In file included from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/protocols/wum/WorkUnitBase.hh:202: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:204: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:209: error: expected ';' before 'void' src/protocols/wum/WorkUnitBase.hh:209: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:223: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:225: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:230: error: expected ';' before 'void' src/protocols/wum/WorkUnitBase.hh:230: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:233: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:236: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:258: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:260: error: expected ';' before 'override' src/protocols/wum/WorkUnitBase.hh:265: error: expected ';' before 'void' src/protocols/wum/WorkUnitBase.hh:265: error: expected ';' before 'override' In file included from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/core/kinematics/MoveMap.hh:90: error: expected ';' before 'override' In file included from src/utility/vectorL.hh:857, from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL_bool.hh: In instantiation of 'utility::vectorL<1l, bool, std::allocator >': src/utility/vector1.fwd.hh:44: instantiated from 'utility::vector1 >' src/core/kinematics/MoveMap.hh:202: instantiated from here src/utility/vectorL_bool.hh:112: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/StructAvrgMover.cc:11: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/vector1.hh:271, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1_bool.hh: In instantiation of 'utility::vector1 >': src/core/kinematics/MoveMap.hh:202: instantiated from here src/utility/vector1_bool.hh:108: error: no members matching 'utility::vectorL<1l, bool, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, bool, std::allocator >' In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/StructAvrgMover.cc:11: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/StructAvrgMover.cc:11: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' src/protocols/mpi_refinement/StructAvrgMover.cc:492: error: expected ';' at end of input src/protocols/mpi_refinement/StructAvrgMover.cc:492: error: expected '}' at end of input In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/StructAvrgMover.cc:11: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh: At global scope: src/utility/options/ScalarOption_T_.hh:155: error: expected unqualified-id at end of input src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of inputIn file included from src/core/scoring/ScoreFunction.hh:36, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:21, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::zero(const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:116: error: expected initializer before ':' token src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of input src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:119: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:119: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::clear()': src/core/scoring/EnergyMap.hh:150: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:154: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:154: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::dot(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&) const': src/core/scoring/EnergyMap.hh:185: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:188: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:188: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:188: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:188: error: expected ')' before 'return' src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::operator*=(core::Real)': src/core/scoring/EnergyMap.hh:214: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:217: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:217: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::accumulate(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:279: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:282: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:282: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'void core::scoring::EMapVector::accumulate(const core::scoring::EMapVector&, const core::scoring::ScoreTypes&, core::Real)': src/core/scoring/EnergyMap.hh:289: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ')' before '}' token src/core/scoring/EnergyMap.hh:292: error: expected primary-expression before '}' token src/core/scoring/EnergyMap.hh:292: error: expected ';' before '}' token src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::sum()': src/core/scoring/EnergyMap.hh:308: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:311: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:311: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:311: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:311: error: expected ')' before 'return' src/core/scoring/EnergyMap.hh: In member function 'core::Real core::scoring::EMapVector::norm_squared(const core::scoring::ScoreTypes&)': src/core/scoring/EnergyMap.hh:319: error: expected initializer before ':' token src/core/scoring/EnergyMap.hh:324: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:324: error: expected ';' before 'return' src/core/scoring/EnergyMap.hh:324: error: expected primary-expression before 'return' src/core/scoring/EnergyMap.hh:324: error: expected ')' before 'return' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: At global scope: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, core::scoring::ScoreType, std::allocator >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >' src/core/scoring/EnergyMap.hh:344: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >::shrink_to_fit' in 'class std::vector >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >': src/core/scoring/EnergyMap.hh:344: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, core::scoring::ScoreType, std::allocator >::shrink_to_fit' in 'class utility::vectorL<1l, core::scoring::ScoreType, std::allocator >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:109: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:109: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:110: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:110: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/Scheduler.os] Error 1 In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:111: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:111: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:112: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:112: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:113: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:113: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:114: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:114: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:21, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/core/scoring/ScoreFunction.hh:124: error: expected ';' before 'override' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:655: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:655: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:661: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:661: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:1118: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:1118: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, std::shared_ptr, std::allocator > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1, std::allocator > >' src/core/scoring/ScoreFunction.hh:1119: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector, std::allocator > >::shrink_to_fit' in 'class std::vector, std::allocator > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1, std::allocator > >': src/core/scoring/ScoreFunction.hh:1119: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, std::shared_ptr, std::allocator > >::shrink_to_fit' in 'class utility::vectorL<1l, std::shared_ptr, std::allocator > >' In file included from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vectorL.hh: In instantiation of 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >': src/utility/vector1.hh:44: instantiated from 'utility::vector1 >, std::allocator > > >' src/core/scoring/ScoreFunction.hh:1137: instantiated from here src/utility/vectorL.hh:132: error: no members matching 'std::vector >, std::allocator > > >::shrink_to_fit' in 'class std::vector >, std::allocator > > >' In file included from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/WorkUnitBase.hh:20, from src/protocols/mpi_refinement/WorkUnit_Sampler.hh:18, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/utility/vector1.hh: In instantiation of 'utility::vector1 >, std::allocator > > >': src/core/scoring/ScoreFunction.hh:1137: instantiated from here src/utility/vector1.hh:119: error: no members matching 'utility::vectorL<1l, utility::vector1 >, std::allocator > > >::shrink_to_fit' in 'class utility::vectorL<1l, utility::vector1 >, std::allocator > > >' In file included from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:15: src/protocols/mpi_refinement/WorkUnit_Sampler.hh:38: error: expected ';' before 'override' In file included from src/utility/options/OptionCollection.hh:23, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:16: src/utility/options/Option.hh: In member function 'void utility::options::Option::check_restricted_access(bool) const': src/utility/options/Option.hh:449: error: cannot allocate an object of abstract type 'utility::excn::EXCN_Msg_Exception' src/utility/excn/Exceptions.hh:63: note: because the following virtual functions are pure within 'utility::excn::EXCN_Msg_Exception': src/utility/excn/EXCN_Base.hh:69: note: virtual void utility::excn::EXCN_Base::show(std::ostream&) const In file included from src/utility/options/ScalarOption_T_.hh:25, from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:16: src/utility/options/ScalarOption.hh: At global scope: src/utility/options/ScalarOption.hh:62: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:89: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:95: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:101: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:107: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:112: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:119: error: expected ';' before 'ScalarOption' src/utility/options/ScalarOption.hh:120: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:126: error: expected ';' before 'override' src/utility/options/ScalarOption.hh:130: error: expected ';' before '}' token In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:16: src/utility/options/ScalarOption_T_.hh:123: error: expected ';' before 'override' src/utility/options/ScalarOption_T_.hh:161: error: expected ';' before 'override' src/protocols/mpi_refinement/WorkUnit_Sampler.cc:313: error: expected ';' at end of input src/protocols/mpi_refinement/WorkUnit_Sampler.cc:313: error: expected '}' at end of input In file included from src/utility/options/BooleanOption.hh:23, from src/utility/options/OptionCollection.hh:24, from src/basic/options/option.hh:17, from src/protocols/mpi_refinement/util.hh:14, from src/protocols/mpi_refinement/WorkUnit_Sampler.cc:16: src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_()': src/utility/options/ScalarOption_T_.hh:77: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:78: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:79: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:80: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In copy constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:88: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:89: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:90: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:91: error: class 'utility::options::ScalarOption_T_' does not have any field named 'legal_' src/utility/options/ScalarOption_T_.hh:92: error: class 'utility::options::ScalarOption_T_' does not have any field named 'lower_' src/utility/options/ScalarOption_T_.hh:93: error: class 'utility::options::ScalarOption_T_' does not have any field named 'upper_' src/utility/options/ScalarOption_T_.hh:94: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:95: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:96: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:97: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In constructor 'utility::options::ScalarOption_T_::ScalarOption_T_(const K&, const std::string&)': src/utility/options/ScalarOption_T_.hh:107: error: class 'utility::options::ScalarOption_T_' does not have any field named 'key_' src/utility/options/ScalarOption_T_.hh:108: error: class 'utility::options::ScalarOption_T_' does not have any field named 'description_' src/utility/options/ScalarOption_T_.hh:109: error: class 'utility::options::ScalarOption_T_' does not have any field named 'short_description_' src/utility/options/ScalarOption_T_.hh:110: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_state_' src/utility/options/ScalarOption_T_.hh:111: error: class 'utility::options::ScalarOption_T_' does not have any field named 'default_value_' src/utility/options/ScalarOption_T_.hh:112: error: class 'utility::options::ScalarOption_T_' does not have any field named 'state_' src/utility/options/ScalarOption_T_.hh:113: error: class 'utility::options::ScalarOption_T_' does not have any field named 'value_' src/utility/options/ScalarOption_T_.hh: In member function 'utility::options::ScalarOption_T_& utility::options::ScalarOption_T_::operator=(const utility::options::ScalarOption_T_&)': src/utility/options/ScalarOption_T_.hh:143: error: 'key_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:144: error: 'description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:145: error: 'short_description_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:146: error: 'legal_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:147: error: 'lower_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:148: error: 'upper_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:149: error: 'default_state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:150: error: 'default_value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:151: error: 'state_' was not declared in this scope src/utility/options/ScalarOption_T_.hh:152: error: 'value_' was not declared in this scope src/utility/options/ScalarOption_T_.hh: At global scope: src/utility/options/ScalarOption_T_.hh:155: error: expected unqualified-id at end of input src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of input src/utility/options/ScalarOption_T_.hh:155: error: expected '}' at end of input In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/vector:65, from src/utility/vectorL.hh:27, from src/utility/vector1.hh:23, from src/core/pose/Pose.fwd.hh:19, from src/protocols/wum/SilentStructStore.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h: In destructor 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = core::pose::signals::DestructionEvent, _Alloc = std::allocator]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:314: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::DestructionEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:132: error: invalid use of incomplete type 'struct core::pose::signals::DestructionEvent' src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::DestructionEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h: In destructor 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = core::pose::signals::GeneralEvent, _Alloc = std::allocator]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:314: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::GeneralEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:132: error: invalid use of incomplete type 'struct core::pose::signals::GeneralEvent' src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::GeneralEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h: In destructor 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = core::pose::signals::EnergyEvent, _Alloc = std::allocator]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:314: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::EnergyEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:132: error: invalid use of incomplete type 'struct core::pose::signals::EnergyEvent' src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::EnergyEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h: In destructor 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = core::pose::signals::ConformationEvent, _Alloc = std::allocator]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:314: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::ConformationEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:132: error: invalid use of incomplete type 'struct core::pose::signals::ConformationEvent' src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::ConformationEvent' In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/memory:51, from src/utility/pointer/std/owning_ptr.fwd.hh:20, from src/utility/pointer/std/owning_ptr.hh:20, from src/utility/pointer/owning_ptr.hh:15, from src/protocols/wum/SilentStructStore.fwd.hh:18, from src/protocols/wum/SilentStructStore.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::DestructionEvent*]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:149: instantiated from 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = core::pose::signals::DestructionEvent*, _Tp = core::pose::signals::DestructionEvent]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:313: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::DestructionEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:123: error: incomplete type 'std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::DestructionEvent*]::_Value_type' not allowed /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::GeneralEvent*]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:149: instantiated from 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = core::pose::signals::GeneralEvent*, _Tp = core::pose::signals::GeneralEvent]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:313: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::GeneralEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:123: error: incomplete type 'std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::GeneralEvent*]::_Value_type' not allowed /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::EnergyEvent*]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:149: instantiated from 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = core::pose::signals::EnergyEvent*, _Tp = core::pose::signals::EnergyEvent]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:313: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::EnergyEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:123: error: incomplete type 'std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::EnergyEvent*]::_Value_type' not allowed /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h: In function 'void std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::ConformationEvent*]': /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:149: instantiated from 'void std::_Destroy(_ForwardIterator, _ForwardIterator, std::allocator<_T2>&) [with _ForwardIterator = core::pose::signals::ConformationEvent*, _Tp = core::pose::signals::ConformationEvent]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:313: instantiated from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = core::pose::signals::ConformationEvent, _Alloc = std::allocator]' src/utility/signals/BufferedSignalHub.hh:93: instantiated from 'std::__shared_count<_Lp>::__shared_count(_Ptr) [with _Ptr = core::pose::Pose*, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:568: instantiated from 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose, __gnu_cxx::_Lock_policy _Lp = (__gnu_cxx::_Lock_policy)2u]' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/shared_ptr.h:1244: instantiated from 'std::shared_ptr<_Tp>::shared_ptr(_Tp1*) [with _Tp1 = core::pose::Pose, _Tp = core::pose::Pose]' src/core/pose/Pose.hh:1897: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h:123: error: incomplete type 'std::_Destroy(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = core::pose::signals::ConformationEvent*]::_Value_type' not allowed In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'bool utility::signals::BufferedSignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:168: error: 's' has incomplete type src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::ConformationEvent' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:239: error: 's' has incomplete type src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::ConformationEvent' src/utility/signals/SignalHub.hh: In member function 'bool utility::signals::SignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:230: error: '' has incomplete type src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::ConformationEvent' In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'bool utility::signals::BufferedSignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:168: error: 's' has incomplete type src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::EnergyEvent' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:239: error: 's' has incomplete type src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::EnergyEvent' src/utility/signals/SignalHub.hh: In member function 'bool utility::signals::SignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:230: error: '' has incomplete type src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::EnergyEvent' In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'bool utility::signals::BufferedSignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:168: error: 's' has incomplete type src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::GeneralEvent' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:239: error: 's' has incomplete type src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::GeneralEvent' src/utility/signals/SignalHub.hh: In member function 'bool utility::signals::SignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:230: error: '' has incomplete type src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::GeneralEvent' In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'bool utility::signals::BufferedSignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:168: error: 's' has incomplete type src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::DestructionEvent' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:239: error: 's' has incomplete type src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::DestructionEvent' src/utility/signals/SignalHub.hh: In member function 'bool utility::signals::SignalHub::signal_allowed(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]': src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:230: error: '' has incomplete type src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'const struct core::pose::signals::DestructionEvent' In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]': src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:156: error: invalid use of incomplete type 'struct core::pose::signals::ConformationEvent' src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::ConformationEvent' src/utility/signals/BufferedSignalHub.hh:156: error: initializing argument 1 of 'void utility::signals::SignalHub::operator()(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send(Signal, std::vector, std::allocator > >&) const [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]': src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:332: error: 's' has incomplete type src/core/pose/signals/ConformationEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::ConformationEvent' cc1plus: warnings being treated as errors src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:344: error: suggest parentheses around assignment used as truth value In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]': src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:156: error: invalid use of incomplete type 'struct core::pose::signals::EnergyEvent' src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::EnergyEvent' src/utility/signals/BufferedSignalHub.hh:156: error: initializing argument 1 of 'void utility::signals::SignalHub::operator()(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send(Signal, std::vector, std::allocator > >&) const [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]': src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:332: error: 's' has incomplete type src/core/pose/signals/EnergyEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::EnergyEvent' src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:344: error: suggest parentheses around assignment used as truth value In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]': src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:156: error: invalid use of incomplete type 'struct core::pose::signals::GeneralEvent' src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::GeneralEvent' src/utility/signals/BufferedSignalHub.hh:156: error: initializing argument 1 of 'void utility::signals::SignalHub::operator()(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send(Signal, std::vector, std::allocator > >&) const [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]': src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:332: error: 's' has incomplete type src/core/pose/signals/GeneralEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::GeneralEvent' src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:344: error: suggest parentheses around assignment used as truth value In file included from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/BufferedSignalHub.hh: In member function 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]': src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/BufferedSignalHub.hh:156: error: invalid use of incomplete type 'struct core::pose::signals::DestructionEvent' src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::DestructionEvent' src/utility/signals/BufferedSignalHub.hh:156: error: initializing argument 1 of 'void utility::signals::SignalHub::operator()(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' In file included from src/utility/signals/BufferedSignalHub.hh:29, from src/core/pose/Pose.hh:85, from src/protocols/mpi_refinement/StructAvrgMover.hh:21, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: src/utility/signals/SignalHub.hh: In member function 'void utility::signals::SignalHub::send(Signal, std::vector, std::allocator > >&) const [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]': src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:332: error: 's' has incomplete type src/core/pose/signals/DestructionEvent.fwd.hh:30: error: forward declaration of 'struct core::pose::signals::DestructionEvent' src/utility/signals/SignalHub.hh:240: instantiated from 'void utility::signals::SignalHub::send_signal(Signal) [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here src/utility/signals/SignalHub.hh:344: error: suggest parentheses around assignment used as truth value In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h:69, from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/memory:49, from src/utility/pointer/std/owning_ptr.fwd.hh:20, from src/utility/pointer/std/owning_ptr.hh:20, from src/utility/pointer/owning_ptr.hh:15, from src/protocols/wum/SilentStructStore.fwd.hh:18, from src/protocols/wum/SilentStructStore.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.hh:18, from src/protocols/mpi_refinement/StructAvrgMover.cc:10: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h: In member function '__gnu_cxx::__normal_iterator<_Iterator, _Container>& __gnu_cxx::__normal_iterator<_Iterator, _Container>::operator++() [with _Iterator = core::pose::signals::ConformationEvent*, _Container = std::vector >]': src/utility/signals/BufferedSignalHub.hh:155: instantiated from 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::ConformationEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h:708: error: cannot increment a pointer to incomplete type 'core::pose::signals::ConformationEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h: In member function '__gnu_cxx::__normal_iterator<_Iterator, _Container>& __gnu_cxx::__normal_iterator<_Iterator, _Container>::operator++() [with _Iterator = core::pose::signals::EnergyEvent*, _Container = std::vector >]': src/utility/signals/BufferedSignalHub.hh:155: instantiated from 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::EnergyEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h:708: error: cannot increment a pointer to incomplete type 'core::pose::signals::EnergyEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h: In member function '__gnu_cxx::__normal_iterator<_Iterator, _Container>& __gnu_cxx::__normal_iterator<_Iterator, _Container>::operator++() [with _Iterator = core::pose::signals::GeneralEvent*, _Container = std::vector >]': src/utility/signals/BufferedSignalHub.hh:155: instantiated from 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::GeneralEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h:708: error: cannot increment a pointer to incomplete type 'core::pose::signals::GeneralEvent' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h: In member function '__gnu_cxx::__normal_iterator<_Iterator, _Container>& __gnu_cxx::__normal_iterator<_Iterator, _Container>::operator++() [with _Iterator = core::pose::signals::DestructionEvent*, _Container = std::vector >]': src/utility/signals/BufferedSignalHub.hh:155: instantiated from 'void utility::signals::BufferedSignalHub::release_buffer() [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' src/utility/signals/BufferedSignalHub.hh:124: instantiated from 'void utility::signals::BufferedSignalHub::unblock() [with ReturnType = void, Signal = core::pose::signals::DestructionEvent]' src/utility/options/ScalarOption_T_.hh:155: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h:708: error: cannot increment a pointer to incomplete type 'core::pose::signals::DestructionEvent' scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/StructAvrgMover.os] Error 1 scons: *** [build/src/release/linux/2.6/64/x86/gcc/6.2/default/protocols/mpi_refinement/WorkUnit_Sampler.os] Error 1 scons: building terminated because of errors.