~/protein_modeling/rosetta_bin_linux_2018.33.60351_bundle/main/source/bin/score_jd2.static.linuxgccrelease \ -database ~/protein_modeling/rosetta_bin_linux_2018.33.60351_bundle/main/database/ \ -in:file:silent version-2/results/all-6cnm-refined.silent \ -in:file:fullatom \ -in:file:silent_struct_type binary \ -ignore_unrecognized_res \ -out:pdb \