-database /home/xtal/rosetta3.9/rosetta_bin_linux_2018.09.60072_bundle/main/database/ -s ./renumb.pdb -ex1 -ex2 -extrachi_cutoff 5 -ignore_unrecognized_res -run:constant_seed -nstruct 1000 -jd2:ntrials 10 -parser:protocol ./test_version2.xml -restore_talaris_behavior