-abinitio
-abinitio:start_native
-abinitio:perturb 1  
-abinitio:close_loops
-abinitio:relax_with_jumps
-abinitio:fastrelax

-loops:loop_file ./inputs/query.loops
-loops:frag_sizes 9 3 1
-loops:frag_files ./inputs/t001_.200.9mers ./inputs/t001_.200.3mers none
-loops:build_initial 
-loops:remodel quick_ccd
-loops:refine refine_ccd

-in:file:fullatom
-in:file:native ./inputs/dhx37WT_noH_res_atom_renum.pdb
-in:file:fasta ./inputs/query.fasta
-in:file:psipred_ss2 ./inputs/t001_.psipred_ss2

-database /cluster/apps/fred/rosetta/main/database

-out:file:fullatom
-out:file:silent_struct_type binary
-out:file:silent ./outputs/query_silent_mpi.out	
#-out:level 400

-nstruct 200