#THIS STUFF CAME FROM THE DOCUMENTATION
#SWITCHED TO NEXTGEN KIC
            
-in:file:s ./input/a3h-v0.1.9_input_newZ.pdb
-in:file:fullatom

-loops:frag_files ./input/a3h2.frag9 ./input/a3h2.frag3 none
-loops:frag_sizes 9 3 1
-loops:loop_file ./input/a3h2.loops                                             
-in:file:psipred_ss2 ./input/a3h2.psipred_ss2

-loops:extended          
-loops:refine refine_kic_with_fragments
-loops:kic_rama2b
-loops:ramp_fa_rep
-loops:ramp_rama

-ex1
-ex2 
                                                   
-auto_setup_metals
#-constraints:cst_fa_file ./input/a3h2_fa.cst
#-constraints:cst_file ./input/a3h2_cen.cst
                                             
-nstruct 1                                                            
-out:pdb
-out:file:fullatom
-out:prefix a3h2_v0.3.0-

-mute protocols.looprelax.FragmentPerturber