apps.public.trRosetta.trRosetta: Starting trRosetta application.
apps.public.trRosetta.trRosetta: Application created 21 January 2021 by Vikram K. Mulligan, Flatiron Institute (vmulligan@flatironinstitute.org).
apps.public.trRosetta.trRosetta: Original trRosetta neural network developed by Jianyi Yang, Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, and David Baker. (https://doi.org/10.1073/pnas.1914677117).
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: No native structure specified.  Not setting native structure in trRosettaProtocol mover.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Set scorefunction for centroid stage 0 to trRosetta_cen0.wts.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Set scorefunction for centroid stage 1 to trRosetta_cen1.wts.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Set scorefunction for centroid stage 2 to trRosetta_cen2.wts.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Set scorefunction for centroid stage 3 to trRosetta_cart.wts.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Set scorefunction for full-atom refinement to ref2015.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Setting full-atom refinement scorefunction atom_pair_constraint weight to 5.0 (was 0.0).
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Setting full-atom refinement scorefunction dihedral_constraint weight to 1.0 (was 0.0).
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Setting full-atom refinement scorefunction angle_constraint weight to 1.0 (was 0.0).
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Starting trRosetta structure prediction protocol.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Building pose from sequence.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Randomizing backbone dihedrals using protocol "ramachandran".
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Removing clashes.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Initializing constraint generator from multiple sequence alignment file "r10.a3m".
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  distance constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  omega dihedral constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  theta dihedral constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  phi angle constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  distance constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  omega dihedral constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  theta dihedral constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Configuring trRosettaConstraintGenerator  to set  phi angle constraints.
protocols.trRosetta_protocols.movers.trRosettaProtocolMover: Generating trRosetta constraints.
protocols.trRosetta_protocols.constraint_generators.trRosettaConstraintGenerator: Loading trRosetta model version 1.
2021-04-27 11:06:08.916050: I tensorflow/cc/saved_model/reader.cc:31] Reading SavedModel from: /Users/ncohen/Desktop/rosetta/main/database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/trRosetta/model_v1/
2021-04-27 11:06:09.037685: I tensorflow/cc/saved_model/reader.cc:54] Reading meta graph with tags { serve }
2021-04-27 11:06:09.209187: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 FMA
2021-04-27 11:06:09.224621: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x7f9466c06c90 initialized for platform Host (this does not guarantee that XLA will be used). Devices:
2021-04-27 11:06:09.224667: I tensorflow/compiler/xla/service/service.cc:176]   StreamExecutor device (0): Host, Default Version
2021-04-27 11:06:09.760118: I tensorflow/cc/saved_model/loader.cc:202] Restoring SavedModel bundle.
2021-04-27 11:06:09.760227: I tensorflow/cc/saved_model/loader.cc:212] The specified SavedModel has no variables; no checkpoints were restored. File does not exist: /Users/ncohen/Desktop/rosetta/main/database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/trRosetta/model_v1/variables/variables.index
2021-04-27 11:06:09.760252: I tensorflow/cc/saved_model/loader.cc:311] SavedModel load for tags { serve }; Status: success. Took 844210 microseconds.


AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.