scons: Reading SConscript files ...
Logging information printing for build: environment 

Environment:

  - AR = ar 
  - ARCOM = $AR $ARFLAGS $TARGET $SOURCES 
  - ARFLAGS = rc 
  - AS = as 
  - ASCOM = $AS $ASFLAGS -o $TARGET $SOURCES 
  - ASFLAGS =  
  - ASPPCOM = $CC $ASPPFLAGS $CPPFLAGS $_CPPDEFFLAGS $_CPPINCFLAGS -c -o $TARGET $SOURCES 
  - ASPPFLAGS = $ASFLAGS 
  - BIBER = biber 
  - BIBERCOM = cd ${TARGET.dir} && $BIBER $BIBERFLAGS ${SOURCE.filebase} 
  - BIBERFLAGS =  
  - BIBTEX = bibtex 
  - BIBTEXCOM = cd ${TARGET.dir} && $BIBTEX $BIBTEXFLAGS ${SOURCE.filebase} 
  - BIBTEXFLAGS =  
  - BUILDERS = {'CFile': <SCons.Builder.CompositeBuilder object at 0x2aaab356da10>, 'DVI': <SCons.Builder.CompositeBuilder object at 0x2aaab3497e10>, 'Zip': <SCons.Builder.BuilderBase object at 0x2aaab346c790>, 'StaticLibrary': <SCons.Builder.BuilderBase object at 0x2aaab356d510>, 'M4': <SCons.Builder.BuilderBase object at 0x2aaab356d7d0>, 'Program': <SCons.Builder.BuilderBase object at 0x2aaab3538a90>, 'ProgramAllAtOnce': <SCons.Builder.BuilderBase object at 0x2aaab356d750>, 'RPCGenHeader': <SCons.Builder.BuilderBase object at 0x2aaab356dd10>, 'CXXFile': <SCons.Builder.CompositeBuilder object at 0x2aaab356db10>, 'Object': <SCons.Builder.CompositeBuilder object at 0x2aaab367b5d0>, 'RPCGenXDR': <SCons.Builder.BuilderBase object at 0x2aaab356ddd0>, 'JavaClassDir': <SCons.Builder.BuilderBase object at 0x2aaab3682390>, 'LoadableModule': <SCons.Builder.BuilderBase object at 0x2aaab367b750>, 'CopyAs': <SCons.Builder.BuilderBase object at 0x2aaab3489310>, 'SharedLibrary': <SCons.Builder.BuilderBase object at 0x2aaab3538e90>, 'JavaH': <SCons.Builder.BuilderBase object at 0x2aaab3682510>, 'CopyTo': <SCons.Builder.BuilderBase object at 0x2aaab3489390>, 'PDF': <SCons.Builder.CompositeBuilder object at 0x2aaab3497310>, 'StaticObject': <SCons.Builder.CompositeBuilder object at 0x2aaab367b5d0>, 'SharedObject': <SCons.Builder.CompositeBuilder object at 0x2aaab367bf10>, 'JarFile': <SCons.Builder.BuilderBase object at 0x2aaab36821d0>, 'Gs': <SCons.Builder.BuilderBase object at 0x2aaab3682750>, 'Tar': <SCons.Builder.BuilderBase object at 0x2aaab346c510>, 'JavaClassFile': <SCons.Builder.BuilderBase object at 0x2aaab36822d0>, 'Rpm': <SCons.Builder.BuilderBase object at 0x2aaab341ed90>, 'RPCGenService': <SCons.Builder.BuilderBase object at 0x2aaab356dd50>, 'Library': <SCons.Builder.BuilderBase object at 0x2aaab356d510>, 'RMIC': <SCons.Builder.BuilderBase object at 0x2aaab34543d0>, 'PostScript': <SCons.Builder.BuilderBase object at 0x2aaab3497450>, 'JavaFile': <SCons.Builder.CompositeBuilder object at 0x2aaab3682110>, 'RPCGenClient': <SCons.Builder.BuilderBase object at 0x2aaab356dbd0>} 
  - CC = /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc 
  - CCCOM = $CC -o $TARGET -c $CFLAGS $CCFLAGS $_CCCOMCOM $SOURCES 
  - CCFLAGS =  -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store 
  - CCVERSION = 4.8.5 
  - CFILESUFFIX = .c 
  - CFLAGS = -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ 
  - CONFIGUREDIR = #/.sconf_temp 
  - CONFIGURELOG = #/config.log 
  - COPYSTR = Copy file(s): "$SOURCES" to "$TARGETS" 
  - CPPDEFPREFIX = -D 
  - CPPDEFSUFFIX =  
  - CPPFLAGS = ['-DBOOST_ERROR_CODE_HEADER_ONLY', '-DBOOST_SYSTEM_NO_DEPRECATED', '-DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS', '-DBOOST_DISABLE_THREADS', '-DPTR_STD', '-D_GLIBCXX_DEBUG', '-DUSEMPI'] 
  - CPPSUFFIXES = ['.c', '.C', '.cxx', '.cpp', '.c++', '.cc', '.h', '.H', '.hxx', '.hpp', '.hh', '.F', '.fpp', '.FPP', '.m', '.mm', '.S', '.spp', '.SPP', '.sx'] 
  - CXX = /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx 
  - CXXCOM = $CXX -o $TARGET -c $CXXFLAGS $CCFLAGS $_CCCOMCOM $SOURCES 
  - CXXFILESUFFIX = .cc 
  - CXXFLAGS =  -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ 
  - CXXVERSION = 4.8.5 
  - DC = dmd 
  - DCOM = $DC $_DINCFLAGS $_DVERFLAGS $_DDEBUGFLAGS $_DFLAGS -c -of$TARGET $SOURCES 
  - DDEBUG = [] 
  - DDEBUGPREFIX = -debug= 
  - DDEBUGSUFFIX =  
  - DFILESUFFIX = .d 
  - DFLAGPREFIX = - 
  - DFLAGS = [] 
  - DFLAGSUFFIX =  
  - DINCPREFIX = -I 
  - DINCSUFFIX =  
  - DLIB = ar cr 
  - DLIBCOM = $DLIB $_DLIBFLAGS $TARGET $SOURCES $_DLIBFLAGS 
  - DLIBDIRPREFIX = -L-L 
  - DLIBDIRSUFFIX =  
  - DLIBFLAGPREFIX = - 
  - DLIBFLAGSUFFIX =  
  - DLIBLINKPREFIX = -L-l 
  - DLIBLINKSUFFIX =  
  - DLINK = $DC 
  - DLINKCOM = $DLINK -of$TARGET $DLINKFLAGS $__DRPATH $SOURCES $_DLIBDIRFLAGS $_DLIBFLAGS 
  - DLINKFLAGS =  
  - DPATH = ['#/'] 
  - DRPATHPREFIX = -L-rpath= 
  - DRPATHSUFFIX =  
  - DSUFFIXES = ['.d'] 
  - DShLibSonameGenerator = <SCons.Tool._LibSonameGenerator object at 0x2aaab3083cd0> 
  - DVERPREFIX = -version= 
  - DVERSIONS = [] 
  - DVERSUFFIX =  
  - DVIPDF = dvipdf 
  - DVIPDFCOM = cd ${TARGET.dir} && $DVIPDF $DVIPDFFLAGS ${SOURCE.file} ${TARGET.file} 
  - DVIPDFFLAGS =  
  - DVIPS = dvips 
  - DVIPSFLAGS =  
  - Dir = <SCons.Defaults.Variable_Method_Caller object at 0x2aaab308c890> 
  - Dirs = <SCons.Defaults.Variable_Method_Caller object at 0x2aaab308c8d0> 
  - ENV = {'PATH': ['/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin', '/apps/compiler/gcc/8.3.0/bin', '/apps/applications/PYTHON/2.7/bin', '/usr/lib64/qt-3.3/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/opt/ddn/ime/bin', '/cm/local/apps/environment-modules/3.2.10/bin', '/opt/pbs/bin', '/home01/a1376a01/.local/bin', '/home01/a1376a01/bin', '/bin', '/usr/bin', '/usr/local/bin']} 
  - EPSTOPDF = epstopdf 
  - EPSTOPDFCOM = $EPSTOPDF $EPSTOPDFFLAGS ${SOURCE} --outfile=${TARGET} 
  - EPSTOPDFFLAGS =  
  - ESCAPE = <function escape at 0x2aaab33d3f50> 
  - F03 = gfortran 
  - F03COM = $F03 -o $TARGET -c $F03FLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F03FLAGS =  
  - F03PPCOM = $F03 -o $TARGET -c $F03FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F08 = gfortran 
  - F08COM = $F08 -o $TARGET -c $F08FLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F08FLAGS =  
  - F08PPCOM = $F08 -o $TARGET -c $F08FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F77 = gfortran 
  - F77COM = $F77 -o $TARGET -c $F77FLAGS $_F77INCFLAGS $SOURCES 
  - F77FLAGS =  
  - F77PPCOM = $F77 -o $TARGET -c $F77FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F77INCFLAGS $SOURCES 
  - F90 = gfortran 
  - F90COM = $F90 -o $TARGET -c $F90FLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F90FLAGS =  
  - F90PPCOM = $F90 -o $TARGET -c $F90FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F95 = gfortran 
  - F95COM = $F95 -o $TARGET -c $F95FLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - F95FLAGS =  
  - F95PPCOM = $F95 -o $TARGET -c $F95FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - FORTRAN = gfortran 
  - FORTRANCOM = $FORTRAN -o $TARGET -c $FORTRANFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES 
  - FORTRANFLAGS =  
  - FORTRANMODDIR =  
  - FORTRANMODDIRPREFIX = -J 
  - FORTRANMODDIRSUFFIX =  
  - FORTRANMODPREFIX =  
  - FORTRANMODSUFFIX = .mod 
  - FORTRANPPCOM = $FORTRAN -o $TARGET -c $FORTRANFLAGS $CPPFLAGS $_CPPDEFFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES 
  - FORTRANSUFFIXES = ['.f', '.for', '.ftn', '.fpp', '.FPP', '.F', '.FOR', '.FTN', '.f77', '.F77', '.f90', '.F90', '.f95', '.F95', '.f03', '.F03', '.f08', '.F08'] 
  - FRAMEWORKPATH =  
  - FRAMEWORKS =  
  - File = <SCons.Defaults.Variable_Method_Caller object at 0x2aaab308c910> 
  - GS = gs 
  - GSCOM = $GS $GSFLAGS -sOutputFile=$TARGET $SOURCES 
  - GSFLAGS = -dNOPAUSE -dBATCH -sDEVICE=pdfwrite 
  - HOST_ARCH = None 
  - HOST_OS = None 
  - IDLSUFFIXES = ['.idl', '.IDL'] 
  - INCF03PREFIX = -I 
  - INCF03SUFFIX =  
  - INCF08PREFIX = -I 
  - INCF08SUFFIX =  
  - INCF77PREFIX = -I 
  - INCF77SUFFIX =  
  - INCF90PREFIX = -I 
  - INCF90SUFFIX =  
  - INCF95PREFIX = -I 
  - INCF95SUFFIX =  
  - INCFORTRANPREFIX = -I 
  - INCFORTRANSUFFIX =  
  - INCPREFIX = -I 
  - INCSUFFIX =  
  - JAR = jar 
  - JARCOM = ${TEMPFILE('$_JARCOM','$JARCOMSTR')} 
  - JARFLAGS = cf 
  - JARSUFFIX = .jar 
  - JAVABOOTCLASSPATH = [] 
  - JAVAC = javac 
  - JAVACCOM = ${TEMPFILE('$_JAVACCOM','$JAVACCOMSTR')} 
  - JAVACFLAGS =  
  - JAVACLASSPATH = [] 
  - JAVACLASSSUFFIX = .class 
  - JAVAH = javah 
  - JAVAHCOM = $JAVAH $JAVAHFLAGS $_JAVAHOUTFLAG $_JAVAHCLASSPATH ${SOURCES.attributes.java_classname} 
  - JAVAHFLAGS =  
  - JAVAINCLUDES = ['/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.222.b03-1.el7.x86_64/include', '/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.222.b03-1.el7.x86_64/include/linux', '/usr/lib/jvm/java-openjdk/include', '/usr/lib/jvm/java-openjdk/include/linux', '/usr/lib/jvm/java-1.8.0/include', '/usr/lib/jvm/java-1.8.0/include/linux', '/usr/lib/jvm/java-1.8.0-openjdk/include', '/usr/lib/jvm/java-1.8.0-openjdk/include/linux'] 
  - JAVASOURCEPATH = [] 
  - JAVASUFFIX = .java 
  - LATEX = latex 
  - LATEXCOM = cd ${TARGET.dir} && $LATEX $LATEXFLAGS ${SOURCE.file} 
  - LATEXFLAGS = -interaction=nonstopmode -recorder 
  - LATEXRETRIES = 4 
  - LATEXSUFFIXES = ['.tex', '.ltx', '.latex'] 
  - LDMODULE = $SHLINK 
  - LDMODULECOM = $LDMODULE -o $TARGET $LDMODULEFLAGS $__LDMODULEVERSIONFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS 
  - LDMODULEEMITTER = [<function ldmod_emitter at 0x2aaab3421cf8>] 
  - LDMODULEFLAGS = $SHLINKFLAGS 
  - LDMODULENOVERSIONSYMLINKS = $SHLIBNOVERSIONSYMLINKS 
  - LDMODULEPREFIX = $SHLIBPREFIX 
  - LDMODULESUFFIX = $SHLIBSUFFIX 
  - LDMODULEVERSION = $SHLIBVERSION 
  - LDMODULEVERSIONFLAGS = $SHLIBVERSIONFLAGS 
  - LEX = flex 
  - LEXCOM = $LEX $LEXFLAGS -t $SOURCES > $TARGET 
  - LEXFLAGS =  
  - LIBDIRPREFIX = -L 
  - LIBDIRSUFFIX =  
  - LIBLINKPREFIX = -l 
  - LIBLINKSUFFIX =  
  - LIBPATH = ['/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib', '/apps/compiler/gcc/8.3.0/lib64', '/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0', '/opt/cray/lib64', '/usr/lib64', '/apps/applications/PYTHON/2.7/lib', '/usr/lib', '/usr/local/lib'] 
  - LIBPREFIX = lib 
  - LIBPREFIXES = ['$LIBPREFIX'] 
  - LIBSUFFIX = .a 
  - LIBSUFFIXES = ['$LIBSUFFIX', '$SHLIBSUFFIX'] 
  - LINK = $SMARTLINK 
  - LINKCALLBACKS = {'VersionedShLibSuffix': <function _versioned_lib_suffix at 0x2aaab3421ed8>, 'VersionedShLibSymlinks': <function _versioned_shlib_symlinks at 0x2aaab34231b8>, 'VersionedLdModSuffix': <function _versioned_lib_suffix at 0x2aaab3421ed8>, 'VersionedLdModSoname': <function _versioned_ldmod_soname at 0x2aaab34230c8>, 'VersionedLdModSymlinks': <function _versioned_ldmod_symlinks at 0x2aaab3423230>, 'VersionedShLibName': <function _versioned_shlib_name at 0x2aaab3421de8>, 'VersionedShLibSoname': <function _versioned_shlib_soname at 0x2aaab3423050>, 'VersionedLdModName': <function _versioned_ldmod_name at 0x2aaab3421e60>} 
  - LINKCOM = $LINK -o $TARGET $LINKFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS 
  - LINKFLAGS = -Wl,--disable-new-dtags 
  - LdModSonameGenerator = <SCons.Tool._LibSonameGenerator object at 0x2aaab3083d50> 
  - M4 = m4 
  - M4COM = cd ${SOURCE.rsrcdir} && $M4 $M4FLAGS < ${SOURCE.file} > ${TARGET.abspath} 
  - M4FLAGS = -E 
  - MAKEACRONYMS = makeindex 
  - MAKEACRONYMSCOM = cd ${TARGET.dir} && $MAKEACRONYMS ${SOURCE.filebase}.acn $MAKEACRONYMSFLAGS -o ${SOURCE.filebase}.acr 
  - MAKEACRONYMSFLAGS = -s ${MAKEACRONYMSSTYLE} -t ${SOURCE.filebase}.alg 
  - MAKEACRONYMSSTYLE = ${SOURCE.filebase}.ist 
  - MAKEGLOSSARY = makeindex 
  - MAKEGLOSSARYCOM = cd ${TARGET.dir} && $MAKEGLOSSARY ${SOURCE.filebase}.glo $MAKEGLOSSARYFLAGS -o ${SOURCE.filebase}.gls 
  - MAKEGLOSSARYFLAGS = -s ${MAKEGLOSSARYSTYLE} -t ${SOURCE.filebase}.glg 
  - MAKEGLOSSARYSTYLE = ${SOURCE.filebase}.ist 
  - MAKEINDEX = makeindex 
  - MAKEINDEXCOM = cd ${TARGET.dir} && $MAKEINDEX $MAKEINDEXFLAGS ${SOURCE.file} 
  - MAKEINDEXFLAGS =  
  - MAKENCL = makeindex 
  - MAKENCLCOM = cd ${TARGET.dir} && $MAKENCL ${SOURCE.filebase}.nlo $MAKENCLFLAGS -o ${SOURCE.filebase}.nls 
  - MAKENCLFLAGS = -s ${MAKENCLSTYLE} -t ${SOURCE.filebase}.nlg 
  - MAKENCLSTYLE = nomencl.ist 
  - MAKENEWGLOSSARY = makeindex 
  - MAKENEWGLOSSARYCOM = cd ${TARGET.dir} && $MAKENEWGLOSSARY  
  - MAXLINELENGTH = 128072 
  - OBJPREFIX =  
  - OBJSUFFIX = .o 
  - PDFCOM = ['$DVIPDFCOM'] 
  - PDFLATEX = pdflatex 
  - PDFLATEXCOM = cd ${TARGET.dir} && $PDFLATEX $PDFLATEXFLAGS ${SOURCE.file} 
  - PDFLATEXFLAGS = -interaction=nonstopmode -recorder 
  - PDFPREFIX =  
  - PDFSUFFIX = .pdf 
  - PDFTEX = pdftex 
  - PDFTEXCOM = cd ${TARGET.dir} && $PDFTEX $PDFTEXFLAGS ${SOURCE.file} 
  - PDFTEXFLAGS = -interaction=nonstopmode -recorder 
  - PIPE_BUILD = True 
  - PLATFORM = posix 
  - PROGPREFIX =  
  - PROGSUFFIX =  
  - PSCOM = cd ${TARGET.dir} && $DVIPS $DVIPSFLAGS -o ${TARGET.file} ${SOURCE.file} 
  - PSPAWN = <function piped_env_spawn at 0x2aaab34081b8> 
  - PSPREFIX =  
  - PSSUFFIX = .ps 
  - PSTDERR = <SCons.Util.Unbuffered object at 0x2aaab3110d90> 
  - PSTDOUT = <SCons.Util.Unbuffered object at 0x2aaab3110e10> 
  - RANLIB = ranlib 
  - RANLIBCOM = $RANLIB $RANLIBFLAGS $TARGET 
  - RANLIBFLAGS =  
  - RDirs = <SCons.Defaults.Variable_Method_Caller object at 0x2aaab308c950> 
  - RMIC = rmic 
  - RMICCOM = $RMIC $RMICFLAGS -d ${TARGET.attributes.java_lookupdir} -classpath ${SOURCE.attributes.java_classdir} ${SOURCES.attributes.java_classname} 
  - RMICFLAGS =  
  - RPATHPREFIX = -Wl,-rpath= 
  - RPATHSUFFIX =  
  - RPCGEN = rpcgen 
  - RPCGENCLIENTFLAGS =  
  - RPCGENFLAGS =  
  - RPCGENHEADERFLAGS =  
  - RPCGENSERVICEFLAGS =  
  - RPCGENXDRFLAGS =  
  - RPM = LC_ALL=C rpmbuild 
  - RPMCOM = build_rpm(target, source, env) 
  - RPMFLAGS = -ta 
  - RPMSUFFIX = .rpm 
  - SCANNERS = [<SCons.Scanner.Base object at 0x2aaab3083290>] 
  - SHCC = $CC 
  - SHCCCOM = $SHCC -o $TARGET -c $SHCFLAGS $SHCCFLAGS $_CCCOMCOM $SOURCES 
  - SHCCFLAGS = $CCFLAGS -fPIC 
  - SHCFLAGS = $CFLAGS 
  - SHCXX = $CXX 
  - SHCXXCOM = $SHCXX -o $TARGET -c $SHCXXFLAGS $SHCCFLAGS $_CCCOMCOM $SOURCES 
  - SHCXXFLAGS = $CXXFLAGS 
  - SHDC = $DC 
  - SHDCOM = $DC $_DINCFLAGS $_DVERFLAGS $_DDEBUGFLAGS $_DFLAGS -c -fPIC -of$TARGET $SOURCES 
  - SHDLIBVERSION = $SHLIBVERSION 
  - SHDLIBVERSIONFLAGS = [] 
  - SHDLINK = $DC 
  - SHDLINKCOM = $DLINK -of$TARGET $SHDLINKFLAGS $__SHDLIBVERSIONFLAGS $__DRPATH $SOURCES $_DLIBDIRFLAGS $_DLIBFLAGS 
  - SHDLINKFLAGS = $DLINKFLAGS -shared -defaultlib=libphobos2.so 
  - SHELL = sh 
  - SHF03 = $F03 
  - SHF03COM = $SHF03 -o $TARGET -c $SHF03FLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF03FLAGS = $F03FLAGS -fPIC 
  - SHF03PPCOM = $SHF03 -o $TARGET -c $SHF03FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF08 = $F08 
  - SHF08COM = $SHF08 -o $TARGET -c $SHF08FLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF08FLAGS = $F08FLAGS -fPIC 
  - SHF08PPCOM = $SHF08 -o $TARGET -c $SHF08FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF77 = $F77 
  - SHF77COM = $SHF77 -o $TARGET -c $SHF77FLAGS $_F77INCFLAGS $SOURCES 
  - SHF77FLAGS = $F77FLAGS -fPIC 
  - SHF77PPCOM = $SHF77 -o $TARGET -c $SHF77FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F77INCFLAGS $SOURCES 
  - SHF90 = $F90 
  - SHF90COM = $SHF90 -o $TARGET -c $SHF90FLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF90FLAGS = $F90FLAGS -fPIC 
  - SHF90PPCOM = $SHF90 -o $TARGET -c $SHF90FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF95 = $F95 
  - SHF95COM = $SHF95 -o $TARGET -c $SHF95FLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHF95FLAGS = $F95FLAGS -fPIC 
  - SHF95PPCOM = $SHF95 -o $TARGET -c $SHF95FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHFORTRAN = $FORTRAN 
  - SHFORTRANCOM = $SHFORTRAN -o $TARGET -c $SHFORTRANFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHFORTRANFLAGS = $FORTRANFLAGS -fPIC 
  - SHFORTRANPPCOM = $SHFORTRAN -o $TARGET -c $SHFORTRANFLAGS $CPPFLAGS $_CPPDEFFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES 
  - SHLIBEMITTER = [<function shlib_emitter at 0x2aaab3421c80>] 
  - SHLIBPREFIX = $LIBPREFIX 
  - SHLIBSUFFIX = .so 
  - SHLIBVERSIONFLAGS = -Wl,-Bsymbolic 
  - SHLINK = $LINK 
  - SHLINKCOM = $SHLINK -o $TARGET $SHLINKFLAGS $__SHLIBVERSIONFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS 
  - SHLINKFLAGS = $LINKFLAGS -shared 
  - SHOBJPREFIX = $OBJPREFIX 
  - SHOBJSUFFIX = .os 
  - SMARTLINK = <function smart_link at 0x2aaab3421b90> 
  - SPAWN = <function subprocess_spawn at 0x2aaab34080c8> 
  - STATIC_AND_SHARED_OBJECTS_ARE_THE_SAME = 0 
  - SWIG = swig 
  - SWIGCFILESUFFIX = _wrap$CFILESUFFIX 
  - SWIGCOM = $SWIG -o $TARGET ${_SWIGOUTDIR} ${_SWIGINCFLAGS} $SWIGFLAGS $SOURCES 
  - SWIGCXXFILESUFFIX = _wrap$CXXFILESUFFIX 
  - SWIGDIRECTORSUFFIX = _wrap.h 
  - SWIGFLAGS =  
  - SWIGINCPREFIX = -I 
  - SWIGINCSUFFIX =  
  - SWIGPATH = [] 
  - SWIGVERSION = 3.0.12 
  - ShLibSonameGenerator = <SCons.Tool._LibSonameGenerator object at 0x2aaab3083cd0> 
  - TAR = tar 
  - TARCOM = $TAR $TARFLAGS -f $TARGET $SOURCES 
  - TARFLAGS = -c 
  - TARGET_ARCH = None 
  - TARGET_OS = None 
  - TARSUFFIX = .tar 
  - TEMPFILE = <class 'SCons.Platform.TempFileMunge'> 
  - TEMPFILEPREFIX = @ 
  - TEX = tex 
  - TEXCOM = cd ${TARGET.dir} && $TEX $TEXFLAGS ${SOURCE.file} 
  - TEXFLAGS = -interaction=nonstopmode -recorder 
  - TOOLS = ['default', 'gnulink', 'gcc', 'g++', 'gfortran', 'gas', 'ar', 'dmd', 'm4', 'rpm', 'filesystem', 'lex', 'yacc', 'rpcgen', 'swig', 'jar', 'javac', 'javah', 'rmic', 'dvipdf', 'dvips', 'gs', 'tex', 'latex', 'pdflatex', 'pdftex', 'tar', 'zip'] 
  - WIXCANDLE = candle.exe 
  - WIXLIGHT = light.exe 
  - YACC = bison 
  - YACCCOM = $YACC $YACCFLAGS -o $TARGET $SOURCES 
  - YACCFLAGS =  
  - YACCHFILESUFFIX = .h 
  - YACCHXXFILESUFFIX = .hpp 
  - YACCVCGFILESUFFIX = .vcg 
  - ZIP = zip 
  - ZIPCOM = zip(target, source, env) 
  - ZIPCOMPRESSION = 8 
  - ZIPFLAGS =  
  - ZIPROOT =  
  - ZIPSUFFIX = .zip 
  - _CCCOMCOM = $CPPFLAGS $_CPPDEFFLAGS $_CPPINCFLAGS 
  - _CPPDEFFLAGS = ${_defines(CPPDEFPREFIX, CPPDEFINES, CPPDEFSUFFIX, __env__)} 
  - _CPPINCFLAGS = $( ${_concat(INCPREFIX, CPPPATH, INCSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _DDEBUGFLAGS = ${_concat(DDEBUGPREFIX, DDEBUG, DDEBUGSUFFIX, __env__)} 
  - _DFLAGS = ${_concat(DFLAGPREFIX, DFLAGS, DFLAGSUFFIX, __env__)} 
  - _DINCFLAGS = ${_concat(DINCPREFIX, DPATH, DINCSUFFIX, __env__, RDirs, TARGET, SOURCE)} 
  - _DLIBDIRFLAGS = ${_concat(DLIBDIRPREFIX, LIBPATH, DLIBDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} 
  - _DLIBFLAGS = ${_stripixes(DLIBLINKPREFIX, LIBS, DLIBLINKSUFFIX, LIBPREFIXES, LIBSUFFIXES,  __env__)} 
  - _DRPATH = ${_concat(DRPATHPREFIX, RPATH, DRPATHSUFFIX, __env__)} 
  - _DVERFLAGS = ${_concat(DVERPREFIX, DVERSIONS, DVERSUFFIX, __env__)} 
  - _F03INCFLAGS = $( ${_concat(INCF03PREFIX, F03PATH, INCF03SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _F08INCFLAGS = $( ${_concat(INCF08PREFIX, F08PATH, INCF08SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _F77INCFLAGS = $( ${_concat(INCF77PREFIX, F77PATH, INCF77SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _F90INCFLAGS = $( ${_concat(INCF90PREFIX, F90PATH, INCF90SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _F95INCFLAGS = $( ${_concat(INCF95PREFIX, F95PATH, INCF95SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _FORTRANINCFLAGS = $( ${_concat(INCFORTRANPREFIX, FORTRANPATH, INCFORTRANSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _FORTRANMODFLAG = $( ${_concat(FORTRANMODDIRPREFIX, FORTRANMODDIR, FORTRANMODDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _JARCOM = $JAR $_JARFLAGS $TARGET $_JARMANIFEST $_JARSOURCES 
  - _JARFLAGS = <function jarFlags at 0x2aaab3452320> 
  - _JARMANIFEST = <function jarManifest at 0x2aaab34522a8> 
  - _JARSOURCES = <function jarSources at 0x2aaab3436c80> 
  - _JAVABOOTCLASSPATH = ${_javapathopt("-bootclasspath", "JAVABOOTCLASSPATH")}  
  - _JAVACCOM = $JAVAC $JAVACFLAGS $_JAVABOOTCLASSPATH $_JAVACLASSPATH -d ${TARGET.attributes.java_classdir} $_JAVASOURCEPATH $SOURCES 
  - _JAVACLASSPATH = ${_javapathopt("-classpath", "JAVACLASSPATH")}  
  - _JAVAHCLASSPATH = <function getJavaHClassPath at 0x2aaab34529b0> 
  - _JAVAHOUTFLAG = <function JavaHOutFlagGenerator at 0x2aaab3452938> 
  - _JAVASOURCEPATH = ${_javapathopt("-sourcepath", "JAVASOURCEPATH", "_JAVASOURCEPATHDEFAULT")}  
  - _JAVASOURCEPATHDEFAULT = ${TARGET.attributes.java_sourcedir} 
  - _LDMODULESONAME = ${LdModSonameGenerator(__env__,TARGET)} 
  - _LDMODULEVERSIONFLAGS = $LDMODULEVERSIONFLAGS -Wl,-soname=$_LDMODULESONAME 
  - _LIBDIRFLAGS = $( ${_concat(LIBDIRPREFIX, LIBPATH, LIBDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _LIBFLAGS = ${_stripixes(LIBLINKPREFIX, LIBS, LIBLINKSUFFIX, LIBPREFIXES, LIBSUFFIXES, __env__)} 
  - _RPATH = ${_concat(RPATHPREFIX, RPATH, RPATHSUFFIX, __env__)} 
  - _SHDLIBSONAME = ${DShLibSonameGenerator(__env__,TARGET)} 
  - _SHDLIBVERSIONFLAGS = $SHDLIBVERSIONFLAGS -L-soname=$_SHDLIBSONAME 
  - _SHLIBSONAME = ${ShLibSonameGenerator(__env__,TARGET)} 
  - _SHLIBVERSIONFLAGS = $SHLIBVERSIONFLAGS -Wl,-soname=$_SHLIBSONAME 
  - _SWIGINCFLAGS = $( ${_concat(SWIGINCPREFIX, SWIGPATH, SWIGINCSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) 
  - _SWIGOUTDIR = ${"-outdir \"%s\"" % SWIGOUTDIR} 
  - __DRPATH = $_DRPATH 
  - __DSHLIBVERSIONFLAGS = ${__libversionflags(__env__,"DSHLIBVERSION","_DSHLIBVERSIONFLAGS")} 
  - __LDMODULEVERSIONFLAGS = ${__libversionflags(__env__,"LDMODULEVERSION","_LDMODULEVERSIONFLAGS")} 
  - __RPATH = $_RPATH 
  - __SHLIBVERSIONFLAGS = ${__libversionflags(__env__,"SHLIBVERSION","_SHLIBVERSIONFLAGS")} 
  - __libversionflags = <function __libversionflags at 0x2aaab30915f0> 
  - _concat = <function _concat at 0x2aaab3091398> 
  - _defines = <function _defines at 0x2aaab3091578> 
  - _javapathopt = <class 'SCons.Tool.javac.pathopt'> 
  - _stripixes = <function _stripixes at 0x2aaab3091488> ------------------------------------------------------------------------
Running versioning script ... Release package detected, using rosetta/main/.release.json to acquire version information...
Done. (0.0 seconds)
Number of option files updated: 0
Total 4580 options.
Finished updating ResidueProperty code
-- no changes needed
Finished updating VariantType code
-- no changes needed
scons: done reading SConscript files.
scons: Building targets ...
external/cxxtest/cxxtestgen.py --error-printer --root -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/ObjexxFCL/ObjexxFCL.cxxtest.cpp test/ObjexxFCL/ObjexxFCL.cxxtest.hh
external/cxxtest/cxxtestgen.py --error-printer --root -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/apps.cxxtest.cpp test/apps/apps.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/1aq1.params", "test/apps/public/ligand_docking/1aq1.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/1dm2_1aq1_10poses.out", "test/apps/public/ligand_docking/1dm2_1aq1_10poses.out")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/7cpa.params", "test/apps/public/ligand_docking/7cpa.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/7cpa_7cpa_input.pdb", "test/apps/public/ligand_docking/7cpa_7cpa_input.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/7cpa_7cpa_native.pdb", "test/apps/public/ligand_docking/7cpa_7cpa_native.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/7cpa_confs.pdb", "test/apps/public/ligand_docking/7cpa_confs.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ZNx.params", "test/apps/public/ligand_docking/ZNx.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ligand_dock.cxxtest.cpp test/apps/public/ligand_docking/ligand_dock.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/silent.out.ref", "test/apps/public/ligand_docking/silent.out.ref")
external/cxxtest/cxxtestgen.py --error-printer --root -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/basic.cxxtest.cpp test/basic/basic.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/citation_manager/CitationManagerTests.cxxtest.cpp test/basic/citation_manager/CitationManagerTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/datacache/HierarchicalDataMap.cxxtest.cpp test/basic/datacache/HierarchicalDataMap.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/execute.cxxtest.cpp test/basic/execute.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/CmdlineOptionsOrderTests.cxxtest.cpp test/basic/options/CmdlineOptionsOrderTests.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_1", "test/basic/options/options_1")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_2", "test/basic/options/options_2")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_system.cxxtest.cpp test/basic/options/options_system.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceLoaderFactory.cxxtest.cpp test/basic/resource_manager/ResourceLoaderFactory.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceManager.cxxtest.cpp test/basic/resource_manager/ResourceManager.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.cpp test/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.cpp test/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/StringResourceStream.cxxtest.cpp test/basic/resource_manager/locator/StringResourceStream.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/svd/SVD_Solver.cxxtest.cpp test/basic/svd/SVD_Solver.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/1pqc.params", "test/core/chemical/1pqc.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/1pqc_test.patch", "test/core/chemical/1pqc_test.patch")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ASX.params", "test/core/chemical/ASX.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomICoor.cxxtest.cpp test/core/chemical/AtomICoor.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTests.cxxtest.cpp test/core/chemical/AtomTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeDatabaseIOTests.cxxtest.cpp test/core/chemical/AtomTypeDatabaseIOTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeSet.cxxtest.cpp test/core/chemical/AtomTypeSet.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CacheableResidueTypeSetsTests.cxxtest.cpp test/core/chemical/CacheableResidueTypeSetsTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CtermAmidationTests.cxxtest.cpp test/core/chemical/CtermAmidationTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/Elements.cxxtest.cpp test/core/chemical/Elements.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/LYX.params", "test/core/chemical/LYX.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/MMAtomTypeSet.cxxtest.cpp test/core/chemical/MMAtomTypeSet.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/NCAACentroidResidueTypeTests.cxxtest.cpp test/core/chemical/NCAACentroidResidueTypeTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/OrbitalTests.cxxtest.cpp test/core/chemical/OrbitalTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PeptoidResidueTypeTests.cxxtest.cpp test/core/chemical/PeptoidResidueTypeTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PoseResidueTypeSet.cxxtest.cpp test/core/chemical/PoseResidueTypeSet.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueGraphTypesTests.cxxtest.cpp test/core/chemical/ResidueGraphTypesTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueProperties.cxxtest.cpp test/core/chemical/ResidueProperties.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeBloatTests.cxxtest.cpp test/core/chemical/ResidueTypeBloatTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeFinderTests.cxxtest.cpp test/core/chemical/ResidueTypeFinderTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetCacheConcurrencyTests.cxxtest.cpp test/core/chemical/ResidueTypeSetCacheConcurrencyTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetTests.cxxtest.cpp test/core/chemical/ResidueTypeSetTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeTests.cxxtest.cpp test/core/chemical/ResidueTypeTests.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/TYR.dot.u", "test/core/chemical/TYR.dot.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/atom_properties.txt", "test/core/chemical/atom_properties.txt")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/atomtype_support.cxxtest.cpp test/core/chemical/atomtype_support.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/automorphism.cxxtest.cpp test/core/chemical/automorphism.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/bond_support.cxxtest.cpp test/core/chemical/bond_support.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfo.cxxtest.cpp test/core/chemical/carbohydrates/CarbohydrateInfo.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfoManager.cxxtest.cpp test/core/chemical/carbohydrates/CarbohydrateInfoManager.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/GlcN.pdb", "test/core/chemical/carbohydrates/GlcN.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/Lex.pdb", "test/core/chemical/carbohydrates/Lex.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/Neu.pdb", "test/core/chemical/carbohydrates/Neu.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/alpha-L-Fucp-_1-6_-D-GlcpNAc-_1-4_-D-GlcpNAc.pdb", "test/core/chemical/carbohydrates/alpha-L-Fucp-_1-6_-D-GlcpNAc-_1-4_-D-GlcpNAc.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/amylopectin_fragment.pdb", "test/core/chemical/carbohydrates/amylopectin_fragment.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/beta-psicose.pdb", "test/core/chemical/carbohydrates/beta-psicose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/codes_to_roots.map", "test/core/chemical/carbohydrates/codes_to_roots.map")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/database_io.cxxtest.cpp test/core/chemical/carbohydrates/database_io.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/glycosylated_peptide.pdb", "test/core/chemical/carbohydrates/glycosylated_peptide.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfoManager.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfoManager.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfo.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/CarbohydrateInfo.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/bond_support.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/bond_support.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/automorphism.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/automorphism.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/atomtype_support.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/atomtype_support.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetCacheConcurrencyTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeSetCacheConcurrencyTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeFinderTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeFinderTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeBloatTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueTypeBloatTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueProperties.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueProperties.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueGraphTypesTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/ResidueGraphTypesTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PoseResidueTypeSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PoseResidueTypeSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PeptoidResidueTypeTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/PeptoidResidueTypeTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/OrbitalTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/OrbitalTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/NCAACentroidResidueTypeTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/NCAACentroidResidueTypeTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/MMAtomTypeSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/MMAtomTypeSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/Elements.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/Elements.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CtermAmidationTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CtermAmidationTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CacheableResidueTypeSetsTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/CacheableResidueTypeSetsTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeDatabaseIOTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTypeDatabaseIOTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomICoor.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/AtomICoor.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/svd/SVD_Solver.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/svd/SVD_Solver.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/StringResourceStream.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/StringResourceStream.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceManager.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceManager.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceLoaderFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceLoaderFactory.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_system.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_system.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/CmdlineOptionsOrderTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/CmdlineOptionsOrderTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/execute.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/execute.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/datacache/HierarchicalDataMap.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/datacache/HierarchicalDataMap.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/citation_manager/CitationManagerTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/citation_manager/CitationManagerTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/basic.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/basic.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ligand_dock.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ligand_dock.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/apps.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/apps.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/ObjexxFCL/ObjexxFCL.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/ObjexxFCL/ObjexxFCL.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/gp120_2glycans_man5.pdb", "test/core/chemical/carbohydrates/gp120_2glycans_man5.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/gp120_2glycans_man5_chainC.pdb", "test/core/chemical/carbohydrates/gp120_2glycans_man5_chainC.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/isomaltose.pdb", "test/core/chemical/carbohydrates/isomaltose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/lactose.pdb", "test/core/chemical/carbohydrates/lactose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/maltotriose.pdb", "test/core/chemical/carbohydrates/maltotriose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/nomenclature.table", "test/core/chemical/carbohydrates/nomenclature.table")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/ring_size_to_morphemes.bad_map", "test/core/chemical/carbohydrates/ring_size_to_morphemes.bad_map")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/ring_size_to_morphemes.map", "test/core/chemical/carbohydrates/ring_size_to_morphemes.map")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/stereochem.cxxtest.cpp test/core/chemical/carbohydrates/stereochem.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/stereochem_test.key", "test/core/chemical/carbohydrates/stereochem_test.key")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/test_linkage_data_table.tsv", "test/core/chemical/carbohydrates/test_linkage_data_table.tsv")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/conflict_patch.txt", "test/core/chemical/conflict_patch.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/conn.pdb", "test/core/chemical/conn.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/extra_atom_properties.txt", "test/core/chemical/extra_atom_properties.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/extra_mm_atom_properties.txt", "test/core/chemical/extra_mm_atom_properties.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/AZO.params", "test/core/chemical/gasteiger/AZO.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/BondLengths.cxxtest.cpp test/core/chemical/gasteiger/BondLengths.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GST.params", "test/core/chemical/gasteiger/GST.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTypeSet.cxxtest.cpp test/core/chemical/gasteiger/GasteigerAtomTypeSet.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTyper.cxxtest.cpp test/core/chemical/gasteiger/GasteigerAtomTyper.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/NXX.params", "test/core/chemical/gasteiger/NXX.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/POx.params", "test/core/chemical/gasteiger/POx.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/PXX.params", "test/core/chemical/gasteiger/PXX.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/SOx.params", "test/core/chemical/gasteiger/SOx.params")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTypeSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTypeSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/BondLengths.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/BondLengths.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/stereochem.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/stereochem.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/database_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/carbohydrates/database_io.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/SXX.params", "test/core/chemical/gasteiger/SXX.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/THI.params", "test/core/chemical/gasteiger/THI.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/mm_atom_properties.txt", "test/core/chemical/mm_atom_properties.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/modifications/foldit_ligand.params", "test/core/chemical/modifications/foldit_ligand.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/orbitals/OrbitalTypeSet.cxxtest.cpp test/core/chemical/orbitals/OrbitalTypeSet.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/orbitals/orbital_properties.txt", "test/core/chemical/orbitals/orbital_properties.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1aq1.mol2.params", "test/core/chemical/params/1aq1.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1dwc.mol2.params", "test/core/chemical/params/1dwc.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1dwd.mol2.params", "test/core/chemical/params/1dwd.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1fm9.mol2.params", "test/core/chemical/params/1fm9.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1ney_lig.mol.params", "test/core/chemical/params/1ney_lig.mol.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1p8d.mol2.params", "test/core/chemical/params/1p8d.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1ppc.mol2.params", "test/core/chemical/params/1ppc.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1pph.mol2.params", "test/core/chemical/params/1pph.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1pq6.mol2.params", "test/core/chemical/params/1pq6.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/1pqc.mol2.params", "test/core/chemical/params/1pqc.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/2ctc.mol2.params", "test/core/chemical/params/2ctc.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/2dbl.mol2.params", "test/core/chemical/params/2dbl.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/2prg.mol2.params", "test/core/chemical/params/2prg.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/4tim.mol2.params", "test/core/chemical/params/4tim.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/6tim.mol2.params", "test/core/chemical/params/6tim.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/7cpa.mol2.params", "test/core/chemical/params/7cpa.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/NEY.mol", "test/core/chemical/params/NEY.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/TT1.params", "test/core/chemical/params/TT1.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/TT1.sdf", "test/core/chemical/params/TT1.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U01.cen.params", "test/core/chemical/params/U01.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U01.mol", "test/core/chemical/params/U01.mol")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/orbitals/OrbitalTypeSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/orbitals/OrbitalTypeSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTyper.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/gasteiger/GasteigerAtomTyper.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U01.params", "test/core/chemical/params/U01.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U01_v3.mol", "test/core/chemical/params/U01_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U02.cen.params", "test/core/chemical/params/U02.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U02.mol", "test/core/chemical/params/U02.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U02.params", "test/core/chemical/params/U02.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U02_v3.mol", "test/core/chemical/params/U02_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U03.cen.params", "test/core/chemical/params/U03.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U03.mol", "test/core/chemical/params/U03.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U03.params", "test/core/chemical/params/U03.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U03_v3.mol", "test/core/chemical/params/U03_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U04.cen.params", "test/core/chemical/params/U04.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U04.mol", "test/core/chemical/params/U04.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U04.params", "test/core/chemical/params/U04.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U04_v3.mol", "test/core/chemical/params/U04_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U05.cen.params", "test/core/chemical/params/U05.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U05.mol", "test/core/chemical/params/U05.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U05.params", "test/core/chemical/params/U05.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U05_v3.mol", "test/core/chemical/params/U05_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U06.cen.params", "test/core/chemical/params/U06.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U06.mol", "test/core/chemical/params/U06.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U06.params", "test/core/chemical/params/U06.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U06_v3.mol", "test/core/chemical/params/U06_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U07.cen.params", "test/core/chemical/params/U07.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U07.mol", "test/core/chemical/params/U07.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U07.params", "test/core/chemical/params/U07.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U07_v3.mol", "test/core/chemical/params/U07_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U08.cen.params", "test/core/chemical/params/U08.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U08.mol", "test/core/chemical/params/U08.mol")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps.test -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/debug/linux/3.10/64/x86/gcc/8.3/mpi build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ligand_dock.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps/apps.cxxtest.o -Lexternal/lib -Lbuild/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Lbuild/external/debug/linux/3.10/64/x86/gcc/8.3/mpi -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/ObjexxFCL.test -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/debug/linux/3.10/64/x86/gcc/8.3/mpi build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/ObjexxFCL/ObjexxFCL.cxxtest.o -Lexternal/lib -Lbuild/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Lbuild/external/debug/linux/3.10/64/x86/gcc/8.3/mpi -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U08.params", "test/core/chemical/params/U08.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U08_v3.mol", "test/core/chemical/params/U08_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U09.cen.params", "test/core/chemical/params/U09.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U09.mol", "test/core/chemical/params/U09.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U09.params", "test/core/chemical/params/U09.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U09_v3.mol", "test/core/chemical/params/U09_v3.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U10.cen.params", "test/core/chemical/params/U10.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U10.mol", "test/core/chemical/params/U10.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U10.params", "test/core/chemical/params/U10.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U11.cen.params", "test/core/chemical/params/U11.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U11.mol", "test/core/chemical/params/U11.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U11.params", "test/core/chemical/params/U11.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U12.cen.params", "test/core/chemical/params/U12.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U12.mol", "test/core/chemical/params/U12.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U12.params", "test/core/chemical/params/U12.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U13.cen.params", "test/core/chemical/params/U13.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U13.mol", "test/core/chemical/params/U13.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U13.params", "test/core/chemical/params/U13.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U14.cen.params", "test/core/chemical/params/U14.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U14.mol", "test/core/chemical/params/U14.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U14.params", "test/core/chemical/params/U14.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U15.cen.params", "test/core/chemical/params/U15.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U15.mol", "test/core/chemical/params/U15.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U15.params", "test/core/chemical/params/U15.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U16.cen.params", "test/core/chemical/params/U16.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U16.mol", "test/core/chemical/params/U16.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U16.params", "test/core/chemical/params/U16.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U17.cen.params", "test/core/chemical/params/U17.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U17.mol", "test/core/chemical/params/U17.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U17.params", "test/core/chemical/params/U17.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U18.cen.params", "test/core/chemical/params/U18.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U18.mol", "test/core/chemical/params/U18.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U18.params", "test/core/chemical/params/U18.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U19.cen.params", "test/core/chemical/params/U19.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U19.mol", "test/core/chemical/params/U19.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U19.params", "test/core/chemical/params/U19.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U20.cen.params", "test/core/chemical/params/U20.cen.params")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic.test -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/debug/linux/3.10/64/x86/gcc/8.3/mpi build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/execute.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceLoaderFactory.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/ResourceManager.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/citation_manager/CitationManagerTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/svd/SVD_Solver.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/datacache/HierarchicalDataMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/CmdlineOptionsOrderTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/options/options_system.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/resource_manager/locator/StringResourceStream.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/basic/basic.cxxtest.o -Lexternal/lib -Lbuild/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Lbuild/external/debug/linux/3.10/64/x86/gcc/8.3/mpi -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -lbasic -lcore.1 -lcore.2 -lcore.3 -lcore.4 -lcore.5 -lcore.6 -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U20.mol", "test/core/chemical/params/U20.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U20.params", "test/core/chemical/params/U20.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U21.cen.params", "test/core/chemical/params/U21.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U21.mol", "test/core/chemical/params/U21.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U21.params", "test/core/chemical/params/U21.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U22.cen.params", "test/core/chemical/params/U22.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U22.mol", "test/core/chemical/params/U22.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U22.params", "test/core/chemical/params/U22.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U23.cen.params", "test/core/chemical/params/U23.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U23.mol", "test/core/chemical/params/U23.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U23.params", "test/core/chemical/params/U23.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U24.cen.params", "test/core/chemical/params/U24.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U24.mol", "test/core/chemical/params/U24.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U24.params", "test/core/chemical/params/U24.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U25.cen.params", "test/core/chemical/params/U25.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U25.mol", "test/core/chemical/params/U25.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U25.params", "test/core/chemical/params/U25.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U26.cen.params", "test/core/chemical/params/U26.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U26.mol", "test/core/chemical/params/U26.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U26.params", "test/core/chemical/params/U26.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U27.cen.params", "test/core/chemical/params/U27.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U27.mol", "test/core/chemical/params/U27.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U27.params", "test/core/chemical/params/U27.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U28.cen.params", "test/core/chemical/params/U28.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U28.mol", "test/core/chemical/params/U28.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U28.params", "test/core/chemical/params/U28.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U29.cen.params", "test/core/chemical/params/U29.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U29.mol", "test/core/chemical/params/U29.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U29.params", "test/core/chemical/params/U29.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U30.cen.params", "test/core/chemical/params/U30.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U30.mol", "test/core/chemical/params/U30.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U30.params", "test/core/chemical/params/U30.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U31.cen.params", "test/core/chemical/params/U31.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U31.mol", "test/core/chemical/params/U31.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U31.params", "test/core/chemical/params/U31.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U32.cen.params", "test/core/chemical/params/U32.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U32.mol", "test/core/chemical/params/U32.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U32.params", "test/core/chemical/params/U32.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U33.cen.params", "test/core/chemical/params/U33.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U33.mol", "test/core/chemical/params/U33.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U33.params", "test/core/chemical/params/U33.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U34.cen.params", "test/core/chemical/params/U34.cen.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U34.mol", "test/core/chemical/params/U34.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/U34.params", "test/core/chemical/params/U34.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/VA1_model.params", "test/core/chemical/params/VA1_model.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/VA1_model.sdf", "test/core/chemical/params/VA1_model.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/cen_types_list.txt", "test/core/chemical/params/cen_types_list.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/odd_edta.mol", "test/core/chemical/params/odd_edta.mol")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/odd_edta.params", "test/core/chemical/params/odd_edta.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/retype_list.txt", "test/core/chemical/params/retype_list.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/type_test1.params", "test/core/chemical/params/type_test1.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_001.mol2.params", "test/core/chemical/params/uk.pp.1_001.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_002.mol2.params", "test/core/chemical/params/uk.pp.1_002.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_003.mol2.params", "test/core/chemical/params/uk.pp.1_003.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_004.mol2.params", "test/core/chemical/params/uk.pp.1_004.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_005.mol2.params", "test/core/chemical/params/uk.pp.1_005.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_006.mol2.params", "test/core/chemical/params/uk.pp.1_006.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_007.mol2.params", "test/core/chemical/params/uk.pp.1_007.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_008.mol2.params", "test/core/chemical/params/uk.pp.1_008.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_009.mol2.params", "test/core/chemical/params/uk.pp.1_009.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_010.mol2.params", "test/core/chemical/params/uk.pp.1_010.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_011.mol2.params", "test/core/chemical/params/uk.pp.1_011.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_012.mol2.params", "test/core/chemical/params/uk.pp.1_012.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_013.mol2.params", "test/core/chemical/params/uk.pp.1_013.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_014.mol2.params", "test/core/chemical/params/uk.pp.1_014.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_015.mol2.params", "test/core/chemical/params/uk.pp.1_015.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_016.mol2.params", "test/core/chemical/params/uk.pp.1_016.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_017.mol2.params", "test/core/chemical/params/uk.pp.1_017.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_018.mol2.params", "test/core/chemical/params/uk.pp.1_018.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_019.mol2.params", "test/core/chemical/params/uk.pp.1_019.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_020.mol2.params", "test/core/chemical/params/uk.pp.1_020.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_021.mol2.params", "test/core/chemical/params/uk.pp.1_021.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_022.mol2.params", "test/core/chemical/params/uk.pp.1_022.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_023.mol2.params", "test/core/chemical/params/uk.pp.1_023.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_024.mol2.params", "test/core/chemical/params/uk.pp.1_024.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_025.mol2.params", "test/core/chemical/params/uk.pp.1_025.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_026.mol2.params", "test/core/chemical/params/uk.pp.1_026.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_027.mol2.params", "test/core/chemical/params/uk.pp.1_027.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_028.mol2.params", "test/core/chemical/params/uk.pp.1_028.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_029.mol2.params", "test/core/chemical/params/uk.pp.1_029.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_030.mol2.params", "test/core/chemical/params/uk.pp.1_030.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_031.mol2.params", "test/core/chemical/params/uk.pp.1_031.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_032.mol2.params", "test/core/chemical/params/uk.pp.1_032.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_033.mol2.params", "test/core/chemical/params/uk.pp.1_033.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_034.mol.params", "test/core/chemical/params/uk.pp.1_034.mol.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/params/uk.pp.1_034.mol2.params", "test/core/chemical/params/uk.pp.1_034.mol2.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/ATP.sdf", "test/core/chemical/rdkit/ATP.sdf")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RDMolToRestype.cxxtest.cpp test/core/chemical/rdkit/RDMolToRestype.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RestypeToRDMol.cxxtest.cpp test/core/chemical/rdkit/RestypeToRDMol.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/benzoate.sdf", "test/core/chemical/rdkit/benzoate.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/nitro.sdf", "test/core/chemical/rdkit/nitro.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/nmethylpyridine.sdf", "test/core/chemical/rdkit/nmethylpyridine.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/purine.sdf", "test/core/chemical/rdkit/purine.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/pyridineNoxide.sdf", "test/core/chemical/rdkit/pyridineNoxide.sdf")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_io.cxxtest.cpp test/core/chemical/residue_io.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_support.cxxtest.cpp test/core/chemical/residue_support.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/RingConformerSet.cxxtest.cpp test/core/chemical/rings/RingConformerSet.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/dummy_conformers.data", "test/core/chemical/rings/dummy_conformers.data")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/ring_conformer_io.cxxtest.cpp test/core/chemical/rings/ring_conformer_io.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/util.cxxtest.cpp test/core/chemical/rings/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/Components_trimmed.sdf", "test/core/chemical/sdf/Components_trimmed.sdf")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOData.cxxtest.cpp test/core/chemical/sdf/MolFileIOData.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOReader.cxxtest.cpp test/core/chemical/sdf/MolFileIOReader.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/example.sdf", "test/core/chemical/sdf/example.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/multi_rotamers.sdf", "test/core/chemical/sdf/multi_rotamers.sdf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/paired_list.txt", "test/core/chemical/sdf/paired_list.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/paired_list_v3.txt", "test/core/chemical/sdf/paired_list_v3.txt")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/single_mol_loading.cxxtest.cpp test/core/chemical/sdf/single_mol_loading.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/uk002.params", "test/core/chemical/uk002.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/util.cxxtest.cpp test/core/chemical/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/4gatA.pdb", "test/core/conformation/4gatA.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Atom.cxxtest.cpp test/core/conformation/Atom.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Conformation.cxxtest.cpp test/core/conformation/Conformation.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Residue.cxxtest.cpp test/core/conformation/Residue.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/UltraLightResidue.cxxtest.cpp test/core/conformation/UltraLightResidue.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Conformation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Conformation.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Atom.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Atom.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/single_mol_loading.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/single_mol_loading.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOReader.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOReader.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOData.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/sdf/MolFileIOData.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/ring_conformer_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/ring_conformer_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/RingConformerSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rings/RingConformerSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_support.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_support.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/residue_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RestypeToRDMol.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RestypeToRDMol.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RDMolToRestype.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/chemical/rdkit/RDMolToRestype.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/conformation_stored_restypes.cxxtest.cpp test/core/conformation/conformation_stored_restypes.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/dock_in.pdb", "test/core/conformation/dock_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB.pdb", "test/core/conformation/membrane/1AFO_AB.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB.span", "test/core/conformation/membrane/1AFO_AB.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB_invalid_order.span", "test/core/conformation/membrane/1AFO_AB_invalid_order.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB_invalid_spanorder.span", "test/core/conformation/membrane/1AFO_AB_invalid_spanorder.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB_invalid_too-long.span", "test/core/conformation/membrane/1AFO_AB_invalid_too-long.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1AFO_AB_invalid_too-short.span", "test/core/conformation/membrane/1AFO_AB_invalid_too-short.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/1U19_tr_ignorechain.pdb", "test/core/conformation/membrane/1U19_tr_ignorechain.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/2LEG_B_tr.pdb", "test/core/conformation/membrane/2LEG_B_tr.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/3MP7__tr.pdb", "test/core/conformation/membrane/3MP7__tr.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/3UKM__tr.pdb", "test/core/conformation/membrane/3UKM__tr.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/4DXW__tr.pdb", "test/core/conformation/membrane/4DXW__tr.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/4DXW__tr.span", "test/core/conformation/membrane/4DXW__tr.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/4WFE__tr.pdb", "test/core/conformation/membrane/4WFE__tr.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/ImplicitLipidInfo.cxxtest.cpp test/core/conformation/membrane/ImplicitLipidInfo.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/MembraneInfo.cxxtest.cpp test/core/conformation/membrane/MembraneInfo.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/Span.cxxtest.cpp test/core/conformation/membrane/Span.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/SpanningTopology.cxxtest.cpp test/core/conformation/membrane/SpanningTopology.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/caln_tm_finalB.span", "test/core/conformation/membrane/caln_tm_finalB.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/pmp22_withSS_PPM_opt.span", "test/core/conformation/membrane/pmp22_withSS_PPM_opt.span")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/Cs.symm", "test/core/conformation/symmetry/Cs.symm")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/Cs_INPUT.pdb", "test/core/conformation/symmetry/Cs_INPUT.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/MirrorSymmetricConformation.cxxtest.cpp test/core/conformation/symmetry/MirrorSymmetricConformation.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmDataLoader.cxxtest.cpp test/core/conformation/symmetry/SymmDataLoader.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmetricConformation.cxxtest.cpp test/core/conformation/symmetry/SymmetricConformation.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/mirror_symm.comp", "test/core/conformation/symmetry/mirror_symm.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/mtest1.pdb", "test/core/conformation/symmetry/mtest1.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/mtest6.pdb", "test/core/conformation/symmetry/mtest6.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/symm_def1.dat", "test/core/conformation/symmetry/symm_def1.dat")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/symm_def2.dat", "test/core/conformation/symmetry/symm_def2.dat")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/symm_test2.pdb", "test/core/conformation/symmetry/symm_test2.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/symm_test_in2.pdb", "test/core/conformation/symmetry/symm_test_in2.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/test_in.pdb", "test/core/conformation/test_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/test_simple_conformation.u", "test/core/conformation/test_simple_conformation.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/util.cxxtest.cpp test/core/conformation/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --error-printer --root -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/core.cxxtest.cpp test/core/core.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/database_location.txt", "test/core/database_location.txt")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/environment/FoldTreeSketch.cxxtest.cpp test/core/environment/FoldTreeSketch.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/consensus_sequence_parsers.cxxtest.cpp test/core/enzymes/consensus_sequence_parsers.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/database_io.cxxtest.cpp test/core/enzymes/database_io.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/rosettase", "test/core/enzymes/rosettase")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/testase", "test/core/enzymes/testase")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/BBTorsionSRFD.cxxtest.cpp test/core/fragment/BBTorsionSRFD.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/ConstantLengthFragments.cxxtest.cpp test/core/fragment/ConstantLengthFragments.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/IndependentBBTorsionSRFD.cxxtest.cpp test/core/fragment/IndependentBBTorsionSRFD.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/OrderedFragSet.cxxtest.cpp test/core/fragment/OrderedFragSet.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/ConstantLengthFragments.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/ConstantLengthFragments.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/BBTorsionSRFD.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/BBTorsionSRFD.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/database_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/database_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/consensus_sequence_parsers.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/enzymes/consensus_sequence_parsers.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/environment/FoldTreeSketch.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/environment/FoldTreeSketch.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/core.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/core.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmetricConformation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmetricConformation.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmDataLoader.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/SymmDataLoader.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/MirrorSymmetricConformation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/symmetry/MirrorSymmetricConformation.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/SpanningTopology.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/SpanningTopology.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/ImplicitLipidInfo.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/ImplicitLipidInfo.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/MembraneInfo.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/MembraneInfo.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/Span.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/membrane/Span.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/conformation_stored_restypes.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/conformation_stored_restypes.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/UltraLightResidue.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/UltraLightResidue.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Residue.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/conformation/Residue.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/aat049603_05.200_v1_3.gz", "test/core/fragment/aat049603_05.200_v1_3.gz")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/picking/vall/vall.cxxtest.cpp test/core/fragment/picking/vall/vall.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/picking/vall/vall_test.dat", "test/core/fragment/picking/vall/vall_test.dat")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/util.cxxtest.cpp test/core/fragment/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/grid/1dwc_3.gridbb.gz", "test/core/grid/1dwc_3.gridbb.gz")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/grid/CartGrid.cxxtest.cpp test/core/grid/CartGrid.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/PartialAtomIDTests.cxxtest.cpp test/core/id/PartialAtomIDTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/SequenceMapping.cxxtest.cpp test/core/id/SequenceMapping.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/3-letter_code_ambiguity_resolution.cxxtest.cpp test/core/import_pose/3-letter_code_ambiguity_resolution.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/3KBA.pdb", "test/core/import_pose/3KBA.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/ImportPoseOptions.cxxtest.cpp test/core/import_pose/ImportPoseOptions.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/PoseResourceLoader.cxxtest.cpp test/core/import_pose/PoseResourceLoader.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/component_reading.cxxtest.cpp test/core/import_pose/component_reading.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/1L8C.cif", "test/core/io/1L8C.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/1QYS.cif", "test/core/io/1QYS.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/1QYS.pdb", "test/core/io/1QYS.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/1l2y_w_glucose.pdb", "test/core/io/1l2y_w_glucose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/1ten.pdb", "test/core/io/1ten.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/5FYL.pdb", "test/core/io/5FYL.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/5FYL_correct_output.pdb", "test/core/io/5FYL_correct_output.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/5FYL_frag_1.pdb", "test/core/io/5FYL_frag_1.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/GTP.params", "test/core/io/GTP.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/HeaderInformationTests.cxxtest.cpp test/core/io/HeaderInformationTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/NomenclatureManagerTests.cxxtest.cpp test/core/io/NomenclatureManagerTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_IO.cxxtest.cpp test/core/io/PDB_IO.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_glycans_IO.cxxtest.cpp test/core/io/PDB_w_glycans_IO.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_lipids_IO.cxxtest.cpp test/core/io/PDB_w_lipids_IO.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileReaderOptions.cxxtest.cpp test/core/io/StructFileReaderOptions.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRep.cxxtest.cpp test/core/io/StructFileRep.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRepOptions.cxxtest.cpp test/core/io/StructFileRepOptions.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/alt_codes_io.cxxtest.cpp test/core/io/alt_codes_io.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.cpp test/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/bin_silentfile_test.out", "test/core/io/bin_silentfile_test.out")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/alt_codes_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/alt_codes_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRepOptions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRepOptions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRep.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileRep.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileReaderOptions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/StructFileReaderOptions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_lipids_IO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_lipids_IO.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_glycans_IO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_w_glycans_IO.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_IO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/PDB_IO.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/NomenclatureManagerTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/NomenclatureManagerTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/HeaderInformationTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/HeaderInformationTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/component_reading.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/component_reading.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/PoseResourceLoader.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/PoseResourceLoader.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/ImportPoseOptions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/ImportPoseOptions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/3-letter_code_ambiguity_resolution.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/import_pose/3-letter_code_ambiguity_resolution.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/grid/CartGrid.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/grid/CartGrid.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/SequenceMapping.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/SequenceMapping.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/PartialAtomIDTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/id/PartialAtomIDTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/picking/vall/vall.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/picking/vall/vall.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/OrderedFragSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/OrderedFragSet.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/IndependentBBTorsionSRFD.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/fragment/IndependentBBTorsionSRFD.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/bin_silentfile_test.pdb", "test/core/io/bin_silentfile_test.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1ioo.ann_seq", "test/core/io/carbohydrates/1ioo.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1ioo.pdb", "test/core/io/carbohydrates/1ioo.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1jnd.ann_seq", "test/core/io/carbohydrates/1jnd.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1jnd.pdb", "test/core/io/carbohydrates/1jnd.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1x38.ann_seq", "test/core/io/carbohydrates/1x38.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/1x38.pdb", "test/core/io/carbohydrates/1x38.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/2cl2.ann_seq", "test/core/io/carbohydrates/2cl2.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/2cl2.pdb", "test/core/io/carbohydrates/2cl2.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/3uue.ann_seq", "test/core/io/carbohydrates/3uue.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/3uue.pdb", "test/core/io/carbohydrates/3uue.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4f8x.ann_seq", "test/core/io/carbohydrates/4f8x.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4f8x.pdb", "test/core/io/carbohydrates/4f8x.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4nyq.ann_seq", "test/core/io/carbohydrates/4nyq.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4nyq.pdb", "test/core/io/carbohydrates/4nyq.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4q56.ann_seq", "test/core/io/carbohydrates/4q56.ann_seq")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/4q56.pdb", "test/core/io/carbohydrates/4q56.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/TestAutoDetectGlycanConnections.cxxtest.cpp test/core/io/carbohydrates/TestAutoDetectGlycanConnections.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/pose_io.cxxtest.cpp test/core/io/carbohydrates/pose_io.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/chains_62.cxxtest.cpp test/core/io/chains_62.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/daa.pdb", "test/core/io/daa.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmcif_IO.cxxtest.cpp test/core/io/mmcif_IO.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/chains_62.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/chains_62.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/pose_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/pose_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/TestAutoDetectGlycanConnections.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/carbohydrates/TestAutoDetectGlycanConnections.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/173D.cif", "test/core/io/mmtf/173D.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/173D.mmtf", "test/core/io/mmtf/173D.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1AA6.cif", "test/core/io/mmtf/1AA6.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1AA6.mmtf", "test/core/io/mmtf/1AA6.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1AUY.cif", "test/core/io/mmtf/1AUY.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1AUY.mmtf", "test/core/io/mmtf/1AUY.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1BNA.cif", "test/core/io/mmtf/1BNA.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1BNA.mmtf", "test/core/io/mmtf/1BNA.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1CAG.cif", "test/core/io/mmtf/1CAG.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1CAG.mmtf", "test/core/io/mmtf/1CAG.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1HTQ.cif", "test/core/io/mmtf/1HTQ.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1HTQ.mmtf", "test/core/io/mmtf/1HTQ.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1IGT.cif", "test/core/io/mmtf/1IGT.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1IGT.mmtf", "test/core/io/mmtf/1IGT.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1L2Q.cif", "test/core/io/mmtf/1L2Q.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1L2Q.mmtf", "test/core/io/mmtf/1L2Q.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1LPV.cif", "test/core/io/mmtf/1LPV.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1LPV.mmtf", "test/core/io/mmtf/1LPV.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1MSH.cif", "test/core/io/mmtf/1MSH.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1MSH.mmtf", "test/core/io/mmtf/1MSH.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1O2F.cif", "test/core/io/mmtf/1O2F.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1O2F.mmtf", "test/core/io/mmtf/1O2F.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1PEF.mmtf", "test/core/io/mmtf/1PEF.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1PEF.pdb", "test/core/io/mmtf/1PEF.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1R9V.cif", "test/core/io/mmtf/1R9V.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1R9V.mmtf", "test/core/io/mmtf/1R9V.mmtf")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmcif_IO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmcif_IO.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1SKM.cif", "test/core/io/mmtf/1SKM.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1SKM.mmtf", "test/core/io/mmtf/1SKM.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1V4F.mmtf", "test/core/io/mmtf/1V4F.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/1V4F.pdb", "test/core/io/mmtf/1V4F.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/3NJW.cif", "test/core/io/mmtf/3NJW.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/3NJW.mmtf", "test/core/io/mmtf/3NJW.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/3ZYB.cif", "test/core/io/mmtf/3ZYB.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/3ZYB.mmtf", "test/core/io/mmtf/3ZYB.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4CK4.cif", "test/core/io/mmtf/4CK4.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4CK4.mmtf", "test/core/io/mmtf/4CK4.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4CUP.cif", "test/core/io/mmtf/4CUP.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4CUP.mmtf", "test/core/io/mmtf/4CUP.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4OPJ.cif", "test/core/io/mmtf/4OPJ.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4OPJ.mmtf", "test/core/io/mmtf/4OPJ.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4P3R.cif", "test/core/io/mmtf/4P3R.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4P3R.mmtf", "test/core/io/mmtf/4P3R.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4V5A.mmtf", "test/core/io/mmtf/4V5A.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4Y60.cif", "test/core/io/mmtf/4Y60.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/4Y60.mmtf", "test/core/io/mmtf/4Y60.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/5EMG.cif", "test/core/io/mmtf/5EMG.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/5EMG.mmtf", "test/core/io/mmtf/5EMG.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/5ESW.cif", "test/core/io/mmtf/5ESW.cif")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/5ESW.mmtf", "test/core/io/mmtf/5ESW.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/binselector_input_S_0002.pdb", "test/core/io/mmtf/binselector_input_S_0002.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/crosslinkermover_octahedral_s2_symm_S_0008.pdb", "test/core/io/mmtf/crosslinkermover_octahedral_s2_symm_S_0008.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/empty-all0.mmtf", "test/core/io/mmtf/empty-all0.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/empty-mmtfVersion99999999.mmtf", "test/core/io/mmtf/empty-mmtfVersion99999999.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/empty-numChains1.mmtf", "test/core/io/mmtf/empty-numChains1.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/empty-numModels1.mmtf", "test/core/io/mmtf/empty-numModels1.mmtf")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/ncbb_packer_palette_cycpep_pre_stage_3.pdb", "test/core/io/mmtf/ncbb_packer_palette_cycpep_pre_stage_3.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/oligourea_predict_native.pdb", "test/core/io/mmtf/oligourea_predict_native.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/util.cxxtest.cpp test/core/io/mmtf/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf_IO.cxxtest.cpp test/core/io/mmtf_IO.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/1BH4.pdb", "test/core/io/pdb/1BH4.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/1e68_link.pdb", "test/core/io/pdb/1e68_link.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/4TTL.pdb", "test/core/io/pdb/4TTL.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/DAminoAcidImportTests.cxxtest.cpp test/core/io/pdb/DAminoAcidImportTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/Field.cxxtest.cpp test/core/io/pdb/Field.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/cycpep_with_ddpp.pdb", "test/core/io/pdb/cycpep_with_ddpp.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/cycpep_with_ddpp_and_ldpp.pdb", "test/core/io/pdb/cycpep_with_ddpp_and_ldpp.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/extra_res_pose.pdb", "test/core/io/pdb/extra_res_pose.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/fake_pdb_record_defs", "test/core/io/pdb/fake_pdb_record_defs")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/pdb_reader.cxxtest.cpp test/core/io/pdb/pdb_reader.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/record_def_io.cxxtest.cpp test/core/io/pdb/record_def_io.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/test.params", "test/core/io/pdb/test.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/1IJ3_cleaned.pdb", "test/core/io/pose_from_sfr/1IJ3_cleaned.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/1rgr_apo.pdb", "test/core/io/pose_from_sfr/1rgr_apo.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/PoseFromSFRBuilder.cxxtest.cpp test/core/io/pose_from_sfr/PoseFromSFRBuilder.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/ace_from_1VDN.pdb", "test/core/io/pose_from_sfr/ace_from_1VDN.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/acetylated_and_methylated_alanine.pdb", "test/core/io/pose_from_sfr/acetylated_and_methylated_alanine.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/chirality_resolution.cxxtest.cpp test/core/io/pose_from_sfr/chirality_resolution.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/cyclic_pep_with_link.pdb", "test/core/io/pose_from_sfr/cyclic_pep_with_link.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_to_sfr/2_peptides_2_glycan_ligands.pdb", "test/core/io/pose_to_sfr/2_peptides_2_glycan_ligands.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_to_sfr/PoseToStructFileRepConverter.cxxtest.cpp test/core/io/pose_to_sfr/PoseToStructFileRepConverter.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent.cxxtest.cpp test/core/io/silent/binary_protein_silent.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent_multipose.cxxtest.cpp test/core/io/silent/binary_protein_silent_multipose.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/cyclic_peptide_binary_silent.silent", "test/core/io/silent/cyclic_peptide_binary_silent.silent")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/cyclic_peptide_binary_silent_duplicated_header.silent", "test/core/io/silent/cyclic_peptide_binary_silent_duplicated_header.silent")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/pdb_silent.cxxtest.cpp test/core/io/silent/pdb_silent.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/protein_silent.cxxtest.cpp test/core/io/silent/protein_silent.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/symmetric_binary_protein_silent.cxxtest.cpp test/core/io/silent/symmetric_binary_protein_silent.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/test_CYD.out", "test/core/io/test_CYD.out")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/test_in.pdb", "test/core/io/test_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/test_in_idealized.pdb", "test/core/io/test_in_idealized.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/two_lipids.pdb", "test/core/io/two_lipids.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/symmetric_binary_protein_silent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/symmetric_binary_protein_silent.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/protein_silent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/protein_silent.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/pdb_silent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/pdb_silent.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent_multipose.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent_multipose.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/silent/binary_protein_silent.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_to_sfr/PoseToStructFileRepConverter.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_to_sfr/PoseToStructFileRepConverter.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/chirality_resolution.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/chirality_resolution.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/PoseFromSFRBuilder.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pose_from_sfr/PoseFromSFRBuilder.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/record_def_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/record_def_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/pdb_reader.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/pdb_reader.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/Field.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/Field.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/DAminoAcidImportTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/pdb/DAminoAcidImportTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf_IO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf_IO.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/io/mmtf/util.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/AtomTree.cxxtest.cpp test/core/kinematics/AtomTree.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/FoldTree.cxxtest.cpp test/core/kinematics/FoldTree.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/MoveMap.cxxtest.cpp test/core/kinematics/MoveMap.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/test.pdb", "test/core/kinematics/test.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/util.cxxtest.cpp test/core/kinematics/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/membrane/hull.cxxtest.cpp test/core/membrane/hull.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/numeric_tests_that_are_easier_to_write_if_you_can_use_a_pose/cyclic_coordinate_descent.cxxtest.cpp test/core/numeric_tests_that_are_easier_to_write_if_you_can_use_a_pose/cyclic_coordinate_descent.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/Minimizer.cxxtest.cpp test/core/optimization/Minimizer.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/ParticleSwarmMinimizer.cxxtest.cpp test/core/optimization/ParticleSwarmMinimizer.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/PolyaramidBackboneMinimize.cxxtest.cpp test/core/optimization/PolyaramidBackboneMinimize.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/2bw9_INPUT.pdb", "test/core/optimization/symmetry/2bw9_INPUT.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/3dg1_INPUT.pdb", "test/core/optimization/symmetry/3dg1_INPUT.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/Cs.sdef", "test/core/optimization/symmetry/Cs.sdef")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/Cs_INPUT.pdb", "test/core/optimization/symmetry/Cs_INPUT.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/SymmetricMinimizer.cxxtest.cpp test/core/optimization/symmetry/SymmetricMinimizer.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c2.sdef", "test/core/optimization/symmetry/c2.sdef")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c2_INPUT.pdb", "test/core/optimization/symmetry/c2_INPUT.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c2_after_min.pdb", "test/core/optimization/symmetry/c2_after_min.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c3.sdef", "test/core/optimization/symmetry/c3.sdef")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c3_INPUT.pdb", "test/core/optimization/symmetry/c3_INPUT.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/c3_after_min.pdb", "test/core/optimization/symmetry/c3_after_min.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/fibril.symm", "test/core/optimization/symmetry/fibril.symm")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/helix.symm", "test/core/optimization/symmetry/helix.symm")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/test_in.pdb", "test/core/optimization/test_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/1FKB.pdb.gz", "test/core/pack/1FKB.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/1l2y_renameH.pdb", "test/core/pack/1l2y_renameH.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/2mcm_0001.pdb", "test/core/pack/2mcm_0001.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/4MRS__opm.pdb", "test/core/pack/4MRS__opm.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/4MRS__opm_0001.pdb", "test/core/pack/4MRS__opm_0001.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/PeptoidDesignTests.cxxtest.cpp test/core/pack/PeptoidDesignTests.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/SymmetricMinimizer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/symmetry/SymmetricMinimizer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/PolyaramidBackboneMinimize.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/PolyaramidBackboneMinimize.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/ParticleSwarmMinimizer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/ParticleSwarmMinimizer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/Minimizer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/optimization/Minimizer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/numeric_tests_that_are_easier_to_write_if_you_can_use_a_pose/cyclic_coordinate_descent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/numeric_tests_that_are_easier_to_write_if_you_can_use_a_pose/cyclic_coordinate_descent.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/membrane/hull.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/membrane/hull.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/MoveMap.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/MoveMap.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/FoldTree.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/FoldTree.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/AtomTree.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/kinematics/AtomTree.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/PeptoidDesignTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/PeptoidDesignTests.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/RTMIN.u", "test/core/pack/RTMIN.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/RotamerTrials.cxxtest.cpp test/core/pack/RotamerTrials.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/RotamerTrials.u", "test/core/pack/RotamerTrials.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/SymmetricRotamerTrials.cxxtest.cpp test/core/pack/SymmetricRotamerTrials.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/SymmetricRotamerTrials.u", "test/core/pack/SymmetricRotamerTrials.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/2akf.clipped.pdb", "test/core/pack/annealer/2akf.clipped.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/FASTERAnnealer.cxxtest.cpp test/core/pack/annealer/FASTERAnnealer.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/SequenceSymmetricAnnealer.cxxtest.cpp test/core/pack/annealer/SequenceSymmetricAnnealer.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/basic_design.cxxtest.cpp test/core/pack/basic_design.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/1UBQ_repack.pdb", "test/core/pack/dunbrack/1UBQ_repack.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergy.cxxtest.cpp test/core/pack/dunbrack/DunbrackEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_oligourea.cxxtest.cpp test/core/pack/dunbrack/DunbrackEnergyTests_oligourea.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_peptoid.cxxtest.cpp test/core/pack/dunbrack/DunbrackEnergyTests_peptoid.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack.cxxtest.cpp test/core/pack/dunbrack/NCAA_dunbrack.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack_betanov15.cxxtest.cpp test/core/pack/dunbrack/NCAA_dunbrack_betanov15.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/PolylinearInterpolation.cxxtest.cpp test/core/pack/dunbrack/PolylinearInterpolation.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/RotamerConstraintDun2002.cxxtest.cpp test/core/pack/dunbrack/RotamerConstraintDun2002.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.cpp test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/dummy_type.params", "test/core/pack/dunbrack/dummy_type.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_bbMET_buriedASP.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_bbMET_buriedASP.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_bbMET_buriedO.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_bbMET_buriedO.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_buriedASP.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/1ARG_buriedASP.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/4SER_buriedASP.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/4SER_buriedASP.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/APA.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/APA.pdb.gz")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cxxtest.cpp test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_NN.pdb", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_NN.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_asn.pdb", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_asn.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_super_NN.pdb", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/C3_super_NN.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/natural_corrections1.pdb", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/natural_corrections1.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/proline_nh_test.pdb.gz", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/proline_nh_test.pdb.gz")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/thr_ser_to_bb.pdb", "test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/thr_ser_to_bb.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltySymmetricTests.cxxtest.cpp test/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltySymmetricTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyTests.cxxtest.cpp test/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyTests.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/C3.symm", "test/core/pack/guidance_scoreterms/buried_unsat_penalty/C3.symm")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphSymmetricTests.cxxtest.cpp test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphSymmetricTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphTests.cxxtest.cpp test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphTests.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase1.pdb", "test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase1.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase1_symm.pdb", "test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase1_symm.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase2.pdb", "test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase2.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase2_symm.pdb", "test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/hbnet_testcase2_symm.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphSymmetricTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphSymmetricTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltySymmetricTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltySymmetricTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/RotamerConstraintDun2002.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/RotamerConstraintDun2002.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/PolylinearInterpolation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/PolylinearInterpolation.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack_betanov15.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack_betanov15.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_peptoid.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_peptoid.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/NCAA_dunbrack.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_oligourea.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/dunbrack/DunbrackEnergyTests_oligourea.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/basic_design.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/basic_design.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/SequenceSymmetricAnnealer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/SequenceSymmetricAnnealer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/FASTERAnnealer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/annealer/FASTERAnnealer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/SymmetricRotamerTrials.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/SymmetricRotamerTrials.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/RotamerTrials.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/RotamerTrials.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyTests.cxxtest.cpp test/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyTests.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/hbnet_energy/S4.symm", "test/core/pack/guidance_scoreterms/hbnet_energy/S4.symm")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/hbnet_energy/hbnet_energy_test1.pdb", "test/core/pack/guidance_scoreterms/hbnet_energy/hbnet_energy_test1.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/sap/SapConstraintEnergy.cxxtest.cpp test/core/pack/guidance_scoreterms/sap/SapConstraintEnergy.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/1ubq.pdb", "test/core/pack/guidance_scoreterms/voids_penalty_energy/1ubq.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests.cxxtest.cpp test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests_symm.cxxtest.cpp test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests_symm.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests.cxxtest.cpp test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup.cxxtest.cpp test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup_2.cxxtest.cpp test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup_2.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/d2.symm", "test/core/pack/guidance_scoreterms/voids_penalty_energy/d2.symm")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/hbonds/HBondGraph_util.cxxtest.cpp test/core/pack/hbonds/HBondGraph_util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.cpp test/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/LinMemInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/LinMemInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/NPDHBondInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/NPDHBondInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/RotamerDots.cxxtest.cpp test/core/pack/interaction_graph/RotamerDots.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SimpleInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/SimpleInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmLinMemInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/SymmLinMemInteractionGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmMinimalistInteractionGraph.cxxtest.cpp test/core/pack/interaction_graph/SymmMinimalistInteractionGraph.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/fibril.silent", "test/core/pack/interaction_graph/fibril.silent")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/resfile", "test/core/pack/interaction_graph/resfile")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/min_pack.cxxtest.cpp test/core/pack/min_pack.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/peptoid_design_1.resfile", "test/core/pack/peptoid_design_1.resfile")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/peptoid_design_2.comp", "test/core/pack/peptoid_design_2.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/peptoid_design_2.resfile", "test/core/pack/peptoid_design_2.resfile")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/GOL.params", "test/core/pack/rotamer_set/GOL.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSet.cxxtest.cpp test/core/pack/rotamer_set/RotamerSet.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSubsets.cxxtest.cpp test/core/pack/rotamer_set/RotamerSubsets.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/glycerol.pdb", "test/core/pack/rotamer_set/glycerol.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/min_pack.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/min_pack.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmMinimalistInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmMinimalistInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmLinMemInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SymmLinMemInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SimpleInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/SimpleInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/RotamerDots.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/RotamerDots.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/NPDHBondInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/NPDHBondInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/LinMemInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/LinMemInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/hbonds/HBondGraph_util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/hbonds/HBondGraph_util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup_2.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup_2.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests_symm.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests_symm.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/sap/SapConstraintEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/sap/SapConstraintEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyTests.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/rotamer_building_functions.cxxtest.cpp test/core/pack/rotamer_set/rotamer_building_functions.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/test_rotamer_sets.pdb", "test/core/pack/rotamer_set/test_rotamer_sets.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/4tim.params", "test/core/pack/rotamers/4tim.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/4tim_confs.pdb", "test/core/pack/rotamers/4tim_confs.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/6SA.params", "test/core/pack/rotamers/6SA.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/B53_corrected.rotlib", "test/core/pack/rotamers/B53_corrected.rotlib")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/DAB_corrected_order.params", "test/core/pack/rotamers/DAB_corrected_order.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/LEU_NCAA.params", "test/core/pack/rotamers/LEU_NCAA.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/LEU_NCAA_DUN02.params", "test/core/pack/rotamers/LEU_NCAA_DUN02.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleLigandRotamerLibrary.cxxtest.cpp test/core/pack/rotamers/SingleLigandRotamerLibrary.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02_no_voronoi.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02_no_voronoi.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_no_voronoi.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_no_voronoi.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_voronoi.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_voronoi.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleLigandRotamerLibrary.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleLigandRotamerLibrary.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/rotamer_building_functions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/rotamer_building_functions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSubsets.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSubsets.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamer_set/RotamerSet.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_oligourea.cxxtest.cpp test/core/pack/rotamers/SingleNCAARotamerLibraryTests_oligourea.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleResidueRotamerLibrary.cxxtest.cpp test/core/pack/rotamers/SingleResidueRotamerLibrary.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/StoredRotamerLibrarySpecification.cxxtest.cpp test/core/pack/rotamers/StoredRotamerLibrarySpecification.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/lx2.bbdep.rotamers.lib", "test/core/pack/rotamers/lx2.bbdep.rotamers.lib")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/lxx.bbdep.rotamers.lib", "test/core/pack/rotamers/lxx.bbdep.rotamers.lib")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/AtomTreeCollection.cxxtest.cpp test/core/pack/scmin/AtomTreeCollection.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMinimizerMap.cxxtest.cpp test/core/pack/scmin/SCMinMinimizerMap.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMultifunc.cxxtest.cpp test/core/pack/scmin/SCMinMultifunc.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/rtmin_setup.cxxtest.cpp test/core/pack/scmin/rtmin_setup.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/EX_test.resfile", "test/core/pack/task/EX_test.resfile")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/PackerTask.cxxtest.cpp test/core/pack/task/PackerTask.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/ResfileReader.cxxtest.cpp test/core/pack/task/ResfileReader.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMultifunc.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMultifunc.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMinimizerMap.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/SCMinMinimizerMap.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/AtomTreeCollection.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/AtomTreeCollection.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/StoredRotamerLibrarySpecification.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/StoredRotamerLibrarySpecification.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleResidueRotamerLibrary.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleResidueRotamerLibrary.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_oligourea.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_oligourea.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_voronoi.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_voronoi.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_no_voronoi.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_no_voronoi.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02_no_voronoi.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02_no_voronoi.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/Resfile_Silent.cxxtest.cpp test/core/pack/task/Resfile_Silent.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/TaskUtilTests.cxxtest.cpp test/core/pack/task/TaskUtilTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/fix_his_tautomer.cxxtest.cpp test/core/pack/task/fix_his_tautomer.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ALLAA_193.resfile", "test/core/pack/task/operation/ALLAA_193.resfile")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ClashBasedRepackShell.cxxtest.cpp test/core/pack/task/operation/ClashBasedRepackShell.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ClashBasedRepackShell.u", "test/core/pack/task/operation/ClashBasedRepackShell.u")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/ResfileReader.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/ResfileReader.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/PackerTask.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/PackerTask.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/rtmin_setup.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/scmin/rtmin_setup.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/DisallowIfNonnativeTaskOperation.u", "test/core/pack/task/operation/DisallowIfNonnativeTaskOperation.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/FillAUTOTaskOperation.cxxtest.cpp test/core/pack/task/operation/FillAUTOTaskOperation.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/OperateOnResidueSubset.cxxtest.cpp test/core/pack/task/operation/OperateOnResidueSubset.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ReplicateTaskOperation.u", "test/core/pack/task/operation/ReplicateTaskOperation.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResFilterFactory.cxxtest.cpp test/core/pack/task/operation/ResFilterFactory.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/FillAUTOTaskOperation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/FillAUTOTaskOperation.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ClashBasedRepackShell.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ClashBasedRepackShell.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/fix_his_tautomer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/fix_his_tautomer.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/TaskUtilTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/TaskUtilTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/Resfile_Silent.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/Resfile_Silent.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResLvlTaskOperationFactory.cxxtest.cpp test/core/pack/task/operation/ResLvlTaskOperationFactory.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperationFactory.cxxtest.cpp test/core/pack/task/operation/TaskOperationFactory.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperations.cxxtest.cpp test/core/pack/task/operation/TaskOperations.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/resfile_test.pdb", "test/core/pack/task/resfile_test.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/resfile_test.resfile", "test/core/pack/task/resfile_test.resfile")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResLvlTaskOperationFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResLvlTaskOperationFactory.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResFilterFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/ResFilterFactory.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/OperateOnResidueSubset.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/OperateOnResidueSubset.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/resfile_test_mut.pdb", "test/core/pack/task/resfile_test_mut.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/1A80_with_NAD.pdb", "test/core/pack/task/residue_selector/1A80_with_NAD.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/2NXX.pdb", "test/core/pack/task/residue_selector/2NXX.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/ClashBasedShellSelectorTests.cxxtest.cpp test/core/pack/task/residue_selector/ClashBasedShellSelectorTests.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperations.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperations.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperationFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/operation/TaskOperationFactory.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/NAD_from_1A80.params", "test/core/pack/task/residue_selector/NAD_from_1A80.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/no_clash.pdb", "test/core/pack/task/residue_selector/no_clash.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/sc_bb_clash.pdb", "test/core/pack/task/residue_selector/sc_bb_clash.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/sc_sc_clash.pdb", "test/core/pack/task/residue_selector/sc_sc_clash.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/short_his.pdb", "test/core/pack/task/short_his.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/test_in.pdb", "test/core/pack/task/test_in.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/ClashBasedShellSelectorTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/residue_selector/ClashBasedShellSelectorTests.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/test_in.resfile", "test/core/pack/task/test_in.resfile")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/task/test_in.silent", "test/core/pack/task/test_in.silent")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/test_in.pdb", "test/core/pack/test_in.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/util.cxxtest.cpp test/core/pack/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/2WDQ__tr.pdb", "test/core/pose/2WDQ__tr.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBInfo.cxxtest.cpp test/core/pose/PDBInfo.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBPoseMap.cxxtest.cpp test/core/pose/PDBPoseMap.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/Pose.cxxtest.cpp test/core/pose/Pose.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pack/util.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/annotated_sequence.cxxtest.cpp test/core/pose/annotated_sequence.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/GlycanTreeSetTests.cxxtest.cpp test/core/pose/carbohydrates/GlycanTreeSetTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/util.cxxtest.cpp test/core/pose/carbohydrates/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/copydofs/CopyDofsTest.cxxtest.cpp test/core/pose/copydofs/CopyDofsTest.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/copydofs/excise_bp_7_14_min_again_relax_full_RNA_P_overlap_reR-hbond_sc_wildtype_bound.pdb", "test/core/pose/copydofs/excise_bp_7_14_min_again_relax_full_RNA_P_overlap_reR-hbond_sc_wildtype_bound.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/datacache/CacheableDataType.cxxtest.cpp test/core/pose/datacache/CacheableDataType.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/multichain.pdb", "test/core/pose/multichain.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/onechain.pdb", "test/core/pose/onechain.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/GlycanTreeSetTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/GlycanTreeSetTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/carbohydrates/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/annotated_sequence.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/annotated_sequence.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/Pose.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/Pose.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBPoseMap.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBPoseMap.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBInfo.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/PDBInfo.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/pdbinfo_test_in.pdb", "test/core/pose/pdbinfo_test_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/reference_pose/1AFO_AB.pdb", "test/core/pose/reference_pose/1AFO_AB.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/reference_pose/ReferencePose.cxxtest.cpp test/core/pose/reference_pose/ReferencePose.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/rna/util.cxxtest.cpp test/core/pose/rna/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/symmetry/util.cxxtest.cpp test/core/pose/symmetry/util.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/reference_pose/ReferencePose.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/reference_pose/ReferencePose.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/datacache/CacheableDataType.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/datacache/CacheableDataType.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/copydofs/CopyDofsTest.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/copydofs/CopyDofsTest.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/util.cxxtest.cpp test/core/pose/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/1pqc.params", "test/core/scoring/1pqc.params")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/1pqc_0001.pdb", "test/core/scoring/1pqc_0001.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/1pqc_0003.pdb", "test/core/scoring/1pqc_0003.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/2GB3.pdb", "test/core/scoring/2GB3.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/rna/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/rna/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/symmetry/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/symmetry/util.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/4dO8B.pdb", "test/core/scoring/4dO8B.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/4mmx_context_0001_renumbered_trimmed.pdb", "test/core/scoring/4mmx_context_0001_renumbered_trimmed.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/BetaNov16WithAutoSetupMetalsTests.cxxtest.cpp test/core/scoring/BetaNov16WithAutoSetupMetalsTests.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyGraph.cxxtest.cpp test/core/scoring/EnergyGraph.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyMap.cxxtest.cpp test/core/scoring/EnergyMap.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnvPairPotential.cxxtest.cpp test/core/scoring/EnvPairPotential.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/HRFDynamicsEnergy.cxxtest.cpp test/core/scoring/HRFDynamicsEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/IsopeptideBondTests.cxxtest.cpp test/core/scoring/IsopeptideBondTests.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyGraph.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyGraph.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/BetaNov16WithAutoSetupMetalsTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/BetaNov16WithAutoSetupMetalsTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/pose/util.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/OmegaTether.cxxtest.cpp test/core/scoring/OmegaTether.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro.cxxtest.cpp test/core/scoring/RamaPrePro.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_oligourea.cxxtest.cpp test/core/scoring/RamaPrePro_oligourea.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/IsopeptideBondTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/IsopeptideBondTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/HRFDynamicsEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/HRFDynamicsEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyMap.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnergyMap.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnvPairPotential.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/EnvPairPotential.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/OmegaTether.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/OmegaTether.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_oligourea.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_oligourea.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_symmgly.cxxtest.cpp test/core/scoring/RamaPrePro_symmgly.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran.cxxtest.cpp test/core/scoring/Ramachandran.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran2B.cxxtest.cpp test/core/scoring/Ramachandran2B.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran_power.cxxtest.cpp test/core/scoring/Ramachandran_power.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunction.cxxtest.cpp test/core/scoring/ScoreFunction.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunctionFactory.cxxtest.cpp test/core/scoring/ScoreFunctionFactory.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreTest.cxxtest.cpp test/core/scoring/ScoreTest.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran2B.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran2B.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_symmgly.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/RamaPrePro_symmgly.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SplitUnfoldedTwoBodyPotential.cxxtest.cpp test/core/scoring/SplitUnfoldedTwoBodyPotential.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreTest.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreTest.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunctionFactory.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunctionFactory.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunction.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/ScoreFunction.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran_power.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/Ramachandran_power.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SurfacePotential.cxxtest.cpp test/core/scoring/SurfacePotential.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL.cxxtest.cpp test/core/scoring/SymmDL.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin.cxxtest.cpp test/core/scoring/SymmDLMin.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA.cxxtest.cpp test/core/scoring/SymmDLMin_NCAA.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA_beta.cxxtest.cpp test/core/scoring/SymmDLMin_NCAA_beta.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_beta.cxxtest.cpp test/core/scoring/SymmDLMin_beta.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SurfacePotential.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SurfacePotential.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SplitUnfoldedTwoBodyPotential.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SplitUnfoldedTwoBodyPotential.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl.cxxtest.cpp test/core/scoring/SymmDLMin_nmethyl.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl_beta.cxxtest.cpp test/core/scoring/SymmDLMin_nmethyl_beta.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_NCAA.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid.cxxtest.cpp test/core/scoring/SymmDLMin_peptoid.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid_beta.cxxtest.cpp test/core/scoring/SymmDLMin_peptoid_beta.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA.cxxtest.cpp test/core/scoring/SymmDL_NCAA.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_nmethyl.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA_beta.cxxtest.cpp test/core/scoring/SymmDL_NCAA_beta.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_beta.cxxtest.cpp test/core/scoring/SymmDL_beta.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_nmethyl.cxxtest.cpp test/core/scoring/SymmDL_nmethyl.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_peptoid.cxxtest.cpp test/core/scoring/SymmDL_peptoid.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly.cxxtest.cpp test/core/scoring/SymmGly.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDLMin_peptoid.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_peptoid.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_peptoid.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_nmethyl.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_nmethyl.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmDL_NCAA_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin.cxxtest.cpp test/core/scoring/SymmGlyMin.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin_betanov15.cxxtest.cpp test/core/scoring/SymmGlyMin_betanov15.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly_betanov15.cxxtest.cpp test/core/scoring/SymmGly_betanov15.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/UnfoldedStatePotential.cxxtest.cpp test/core/scoring/UnfoldedStatePotential.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/VirtualResidues.cxxtest.cpp test/core/scoring/VirtualResidues.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_10pctaro.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_10pctaro.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_1W.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/UnfoldedStatePotential.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/UnfoldedStatePotential.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly_betanov15.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGly_betanov15.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin_betanov15.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/SymmGlyMin_betanov15.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W1Y.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_1W1Y.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctpro.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_20pctpro.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_10pctaro.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_10pctaro.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/VirtualResidues.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/VirtualResidues.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W1Y.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_1W1Y.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctpro.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctpro.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctprofract.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_20pctprofract.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2WY.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_2WY.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2WY.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2WY.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctprofract.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_20pctprofract.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2aro.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_2aro.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_3ACPC.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_3ACPC.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2aro.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_2aro.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_3ACPC.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_3ACPC.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_aliphnotpro.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_aliphnotpro.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_aliphnotpro.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_aliphnotpro.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_bools.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_bools.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_consttail.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_consttail.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_bools.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_bools.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_interpolate_linear.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_interpolate_linear.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_consttail.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_consttail.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_linconsttail.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_linconsttail.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_interpolate_linear.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_interpolate_linear.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_linconsttail.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_linconsttail.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_packer.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_packer.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratail.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_quadratail.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratic_interpolation.cxxtest.cpp test/core/scoring/aa_composition_energy/AACompositionEnergy_quadratic_interpolation.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/aliphatic_not_pro.comp", "test/core/scoring/aa_composition_energy/aliphatic_not_pro.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/complex_booleans.comp", "test/core/scoring/aa_composition_energy/complex_booleans.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/exactly_three_transACPC.comp", "test/core/scoring/aa_composition_energy/exactly_three_transACPC.comp")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_packer.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_packer.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/exactly_two_trportyr.comp", "test/core/scoring/aa_composition_energy/exactly_two_trportyr.comp")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratail.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratail.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/fractdelta.comp", "test/core/scoring/aa_composition_energy/fractdelta.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/fractdelta_quadratic.comp", "test/core/scoring/aa_composition_energy/fractdelta_quadratic.comp")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratic_interpolation.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/AACompositionEnergy_quadratic_interpolation.cxxtest.cpp
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/one_trp_one_tyr.comp", "test/core/scoring/aa_composition_energy/one_trp_one_tyr.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/tailfunction_const.comp", "test/core/scoring/aa_composition_energy/tailfunction_const.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/tailfunction_linear.comp", "test/core/scoring/aa_composition_energy/tailfunction_linear.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/tailfunction_quadratic.comp", "test/core/scoring/aa_composition_energy/tailfunction_quadratic.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aa_composition_energy/twenty_percent_pro_fract_ranges.comp", "test/core/scoring/aa_composition_energy/twenty_percent_pro_fract_ranges.comp")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/aligned_for_rmstest.pdb", "test/core/scoring/aligned_for_rmstest.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/atom_pair_constraint.data", "test/core/scoring/atom_pair_constraint.data")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/atomic_depth/AtomicDepth.cxxtest.cpp test/core/scoring/atomic_depth/AtomicDepth.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/backbone_aa.cxxtest.cpp test/core/scoring/backbone_aa.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/betapose.pdb", "test/core/scoring/betapose.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/bin_transitions/BinTransitionCalculator.cxxtest.cpp test/core/scoring/bin_transitions/BinTransitionCalculator.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/CHIEnergyFunction.cxxtest.cpp test/core/scoring/carbohydrates/CHIEnergyFunction.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/OmegaPreferencesFunction.cxxtest.cpp test/core/scoring/carbohydrates/OmegaPreferencesFunction.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/database_io.cxxtest.cpp test/core/scoring/carbohydrates/database_io.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/dummy_params.data", "test/core/scoring/carbohydrates/dummy_params.data")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/util.cxxtest.cpp test/core/scoring/carbohydrates/util.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.cpp test/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/database_io.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/database_io.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/OmegaPreferencesFunction.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/OmegaPreferencesFunction.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/CHIEnergyFunction.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/CHIEnergyFunction.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/bin_transitions/BinTransitionCalculator.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/bin_transitions/BinTransitionCalculator.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/backbone_aa.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/backbone_aa.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/atomic_depth/AtomicDepth.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/atomic_depth/AtomicDepth.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cenrot/CenRotEnergy.cxxtest.cpp test/core/scoring/cenrot/CenRotEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousConstraint.cxxtest.cpp test/core/scoring/constraints/AmbiguousConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRConstraint.cxxtest.cpp test/core/scoring/constraints/AmbiguousNMRConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRDistanceConstraint.cxxtest.cpp test/core/scoring/constraints/AmbiguousNMRDistanceConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cenrot/CenRotEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cenrot/CenRotEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbohydrates/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AngleConstraint.cxxtest.cpp test/core/scoring/constraints/AngleConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AtomPairConstraint.cxxtest.cpp test/core/scoring/constraints/AtomPairConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubConstraint.cxxtest.cpp test/core/scoring/constraints/BackboneStubConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubLinearConstraint.cxxtest.cpp test/core/scoring/constraints/BackboneStubLinearConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRDistanceConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRDistanceConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousNMRConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AmbiguousConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AngleConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AngleConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AtomPairConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/AtomPairConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubLinearConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BackboneStubLinearConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BigBinConstraint.cxxtest.cpp test/core/scoring/constraints/BigBinConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BoundConstraint.cxxtest.cpp test/core/scoring/constraints/BoundConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstantConstraint.cxxtest.cpp test/core/scoring/constraints/ConstantConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintIO.cxxtest.cpp test/core/scoring/constraints/ConstraintIO.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSet.cxxtest.cpp test/core/scoring/constraints/ConstraintSet.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BoundConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BoundConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BigBinConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/BigBinConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstantConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstantConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintIO.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintIO.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSet.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSet.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSetRemapping.cxxtest.cpp test/core/scoring/constraints/ConstraintSetRemapping.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintsEnergy.cxxtest.cpp test/core/scoring/constraints/ConstraintsEnergy.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSetRemapping.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintSetRemapping.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/CoordinateConstraint.cxxtest.cpp test/core/scoring/constraints/CoordinateConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralConstraint.cxxtest.cpp test/core/scoring/constraints/DihedralConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintsEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ConstraintsEnergy.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralPairConstraint.cxxtest.cpp test/core/scoring/constraints/DihedralPairConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/CoordinateConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/CoordinateConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/FabConstraint.cxxtest.cpp test/core/scoring/constraints/FabConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralPairConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/DihedralPairConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/KofNConstraint.cxxtest.cpp test/core/scoring/constraints/KofNConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/FabConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/FabConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/KofNConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/KofNConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/LocalCoordinateConstraint.cxxtest.cpp test/core/scoring/constraints/LocalCoordinateConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/LocalCoordinateConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/LocalCoordinateConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAngleConstraint.cxxtest.cpp test/core/scoring/constraints/NamedAngleConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAtomPairConstraint.cxxtest.cpp test/core/scoring/constraints/NamedAtomPairConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAngleConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAngleConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAtomPairConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NamedAtomPairConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NonResidueTypeConstraint.cxxtest.cpp test/core/scoring/constraints/NonResidueTypeConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/RTConstraint.cxxtest.cpp test/core/scoring/constraints/RTConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeConstraint.cxxtest.cpp test/core/scoring/constraints/ResidueTypeConstraint.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/RTConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/RTConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NonResidueTypeConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/NonResidueTypeConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeLinkingConstraint.cxxtest.cpp test/core/scoring/constraints/ResidueTypeLinkingConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SequenceProfileConstraint.cxxtest.cpp test/core/scoring/constraints/SequenceProfileConstraint.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SiteConstraint.cxxtest.cpp test/core/scoring/constraints/SiteConstraint.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/test_in.pdb", "test/core/scoring/constraints/test_in.pdb")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SequenceProfileConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SequenceProfileConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SiteConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/SiteConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeLinkingConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeLinkingConstraint.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeConstraint.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/ResidueTypeConstraint.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/util.cxxtest.cpp test/core/scoring/constraints/util.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/coordinate_constraint.data", "test/core/scoring/coordinate_constraint.data")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.cpp test/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry.cxxtest.cpp test/core/scoring/cyclic_geometry.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_A.cxxtest.cpp test/core/scoring/cyclic_geometry_beta_nmethyl_2chain_A.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_B.cxxtest.cpp test/core/scoring/cyclic_geometry_beta_nmethyl_2chain_B.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_A.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_A.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/constraints/util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_B.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_nmethyl_2chain_B.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_peptoid_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_beta_peptoid_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15.cxxtest.cpp test/core/scoring/cyclic_geometry_betanov15.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_betanov15_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_nmethyl_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_betanov15_nmethyl_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16.cxxtest.cpp test/core/scoring/cyclic_geometry_betanov16.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_betanov16_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl.cxxtest.cpp test/core/scoring/cyclic_geometry_nmethyl.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_nmethyl_2chain.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_beta.cxxtest.cpp test/core/scoring/cyclic_geometry_nmethyl_beta.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_betanov15.cxxtest.cpp test/core/scoring/cyclic_geometry_nmethyl_betanov15.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid.cxxtest.cpp test/core/scoring/cyclic_geometry_peptoid.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_2chain.cxxtest.cpp test/core/scoring/cyclic_geometry_peptoid_2chain.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_betanov15.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_betanov15.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_nmethyl.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov16.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_nmethyl_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_nmethyl_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_betanov15.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_peptoid_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_beta_peptoid_2chain.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_2chain.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_2chain.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_beta.cxxtest.cpp test/core/scoring/cyclic_geometry_peptoid_beta.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_peptide.pdb", "test/core/scoring/cyclic_peptide.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.cpp test/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dslf_ca_dih.u", "test/core/scoring/dslf_ca_dih.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dslf_cs_ang.u", "test/core/scoring/dslf_cs_ang.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dslf_ss_dih.u", "test/core/scoring/dslf_ss_dih.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dslf_ss_dst.u", "test/core/scoring/dslf_ss_dst.u")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/Dunbrack2002.cxxtest.cpp test/core/scoring/dunbrack/Dunbrack2002.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/best_rotamer_energy.u", "test/core/scoring/dunbrack/best_rotamer_energy.u")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/test_in.pdb", "test/core/scoring/dunbrack/test_in.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/test_in_rotamers.dat", "test/core/scoring/dunbrack/test_in_rotamers.dat")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy.cxxtest.cpp test/core/scoring/elec/FA_ElecEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy_pre_talaris.cxxtest.cpp test/core/scoring/elec/FA_ElecEnergy_pre_talaris.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/RNA_FA_ElecEnergy.cxxtest.cpp test/core/scoring/elec/RNA_FA_ElecEnergy.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/electron_density/1onc_8A.mrc", "test/core/scoring/electron_density/1onc_8A.mrc")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/2lzm.pdb", "test/core/scoring/epr_deer/2lzm.pdb")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERDataCache_test.cxxtest.cpp test/core/scoring/epr_deer/DEERDataCache_test.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/RNA_FA_ElecEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/RNA_FA_ElecEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy_pre_talaris.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/elec/FA_ElecEnergy_pre_talaris.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/Dunbrack2002.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/dunbrack/Dunbrack2002.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_beta.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/cyclic_geometry_peptoid_beta.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERDataCache_test.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERDataCache_test.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERData_test.cxxtest.cpp test/core/scoring/epr_deer/DEERData_test.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEEREnergyMethod_test.cxxtest.cpp test/core/scoring/epr_deer/DEEREnergyMethod_test.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/EPRSpinLabel_test.cxxtest.cpp test/core/scoring/epr_deer/EPRSpinLabel_test.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/coords_file.txt", "test/core/scoring/epr_deer/coords_file.txt")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/input_file_epr_deer.txt", "test/core/scoring/epr_deer/input_file_epr_deer.txt")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableEnergy.cxxtest.cpp test/core/scoring/etable/EtableEnergy.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableUnModifyPot.cxxtest.cpp test/core/scoring/etable/EtableUnModifyPot.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/TableVsAnalyticEtable.cxxtest.cpp test/core/scoring/etable/TableVsAnalyticEtable.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_atr.data", "test/core/scoring/fa_atr.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_elec.data", "test/core/scoring/fa_elec.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_intra_atr.data", "test/core/scoring/fa_intra_atr.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_intra_rep.data", "test/core/scoring/fa_intra_rep.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_intra_sol.data", "test/core/scoring/fa_intra_sol.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_rep.data", "test/core/scoring/fa_rep.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fa_sol.data", "test/core/scoring/fa_sol.data")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fake_restype_with_tyr_backbone_aa.params", "test/core/scoring/fake_restype_with_tyr_backbone_aa.params")
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fiber_diffraction/FiberDiffractionEnergy.cxxtest.cpp test/core/scoring/fiber_diffraction/FiberDiffractionEnergy.cxxtest.hh
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fiber_diffraction/data/1IFP.mini.pdb", "test/core/scoring/fiber_diffraction/data/1IFP.mini.pdb")
Copy("build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fiber_diffraction/data/1ifp.mini.dat", "test/core/scoring/fiber_diffraction/data/1ifp.mini.dat")
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fiber_diffraction/FiberDiffractionEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/fiber_diffraction/FiberDiffractionEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/TableVsAnalyticEtable.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/TableVsAnalyticEtable.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableUnModifyPot.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableUnModifyPot.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableEnergy.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/etable/EtableEnergy.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERData_test.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEERData_test.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/EPRSpinLabel_test.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/EPRSpinLabel_test.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEEREnergyMethod_test.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/scoring/epr_deer/DEEREnergyMethod_test.cxxtest.cpp
.
.
.
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector0.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector0.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/type_traits.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/type_traits.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/utility.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/utility.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/thread/ReadWriteMutex.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/thread/ReadWriteMutex.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/validate_w_xsd.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/validate_w_xsd.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/XMLSchemaGeneration.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/XMLSchemaGeneration.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/Tag.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/Tag.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/string_util.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/string_util.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sql_database/DatabaseSessionManagerTests.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sql_database/DatabaseSessionManagerTests.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sort.functions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sort.functions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/small_vector1.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/small_vector1.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/simulate_mpi.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/simulate_mpi.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/TokenHub.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/TokenHub.cxxtest.cpp
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.functions.cxxtest.cpp test/utility/vector1.functions.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1_bool.cxxtest.cpp test/utility/vector1_bool.cxxtest.hh
external/cxxtest/cxxtestgen.py --have-std --part -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vectorL.cxxtest.cpp test/utility/vectorL.cxxtest.hh
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vectorL.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vectorL.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1_bool.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1_bool.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.functions.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.functions.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.cxxtest.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem external/cxxtest/ -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O0 -g -ggdb -ffloat-store -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -D_GLIBCXX_DEBUG -DUSEMPI -Iexternal/cxxtest -I. -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Itest -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.cxxtest.cpp
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/debug/linux/3.10/64/x86/gcc/8.3/mpi build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/relax/membrane/MPFastRelaxFoldTree.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/relax/membrane/MPRangeRelaxMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/kinematic_closure/VicinitySamplingKinematicPerturber.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/pose_outputters/PDBPoseOutputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/pose_outputters/ScoreFileOutputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/pose_outputters/SilentFilePoseOutputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/BetaTurnDetectionFeatures.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/FeaturesReporterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/InterfaceFeaturesTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/ProteinSilentReportTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/SandwichFeaturesTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/features/CoordSerializationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/hbnet/HBNet.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_movers/AddConstraintsToCurrentConformationMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_movers/ClearConstraintsMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_movers/CstInfoMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_movers/ResidueTypeConstraintMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/tcr/TCRmodelSeqParserTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/tcr/TCRmodelGraftingTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/database/AntibodyDatabase.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/backrub/BackrubProtocolTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/drug_design/orphan_restypes.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/minimization_packing/GreenPacker.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pose_metric_calculators/Neighbor_Calculators.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/motif_grafting/MotifGraftMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/filters/BasicFilters.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/filters/CalculatorFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/filters/FilterFactory.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/filters/FilterValueMetricTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/filters/ReplicateFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/residue_selectors/StoredResidueSubsetSelector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/residue_selectors/TaskSelector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/residue_selectors/HBondSelector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/residue_selectors/LigandMetalContactSelector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/residue_selectors/NativeSelector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/recon_design/MSDMoverTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/recon_design/FindConsensusSequenceTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/recon_design/FitnessFilterTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/peptide_deriver/PeptideDeriverFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/contact_map/ContactMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fldsgn/potentials/SetSecStructEnergiesMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/helical_bundle_predict/HBPHelixAssignmentsTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/scoring/InterchainEnvEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/scoring/InterchainPairEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/scoring/Interface.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/surface_docking/SurfaceVectorLoader.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_betanov15.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_design.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_design_betanov15.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/closers/CCDLoopClosureMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/closers/JacobiLoopClosureMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzymatic_movers/GlycosyltransferaseMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/switches/GraftSwitchMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/sparta/Sparta.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/ConcatenatePosesMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/CopyRotamerMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/ddG.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/DisulfideInsertionMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/FavorSequenceProfile.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/FAVirtMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/FoldTreeFromMotif.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/GenericSimulatedAnnealer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/MutateResidue.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/SetupMetalsMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/SimpleThreadingMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/SmallMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/SwitchChainOrderMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/multistage_rosetta_scripts/MRSJobQueen.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/multistage_rosetta_scripts/MRSClustering.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/grafting/regex_based_cdr_detection.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/grafting/json_based_cdr_detection.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/grafting/regex_manager.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/grafting/scs_functor_filtering.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/benchmark/MakeCanonicalHelixTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nonlocal/Chunk.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nonlocal/NonlocalUtil.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nonlocal/Region.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/environment/CoMTrack.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/environment/EnvironmentJump.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/environment/EnvironmentTorsion.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/environment/ProtectedConf.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/job_summaries/EnergyJobSummaryTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/job_summaries/StandardPoseJobSummaryTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/features_reporter_creators.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/filter_creators.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nmr/rdc/RDCEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/hotspot_hashing/hotspot_hashing.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/connection/BridgeChains.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/connection/ConnectionArchitectTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nmr/pcs/PCSTensorOptimizer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nmr/pcs/PCSEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/JobGenealogist.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/StandardJobQueen.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/StandardJobQueenOverrideInputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/StandardJobQueenOverrideOutputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/NodeManagers.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/hybridization/TMalign.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/parser/BluePrint.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/parser/DataLoaders.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_moves/oop/OopPuckMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/chromophore/ReadResidueCoordinatesFromPDBTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/chromophore/ChromophoreDataReaderTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/indexed_structure_store/search/QueryDatabase.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rna/AlignmentEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rna/BasePairConstraints.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rna/RNA_DeNovoOptimizerTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rna/RNA_DeNovoProtocolTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pmut_scan/PointMutScanDriver.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/snugdock/SnugDockProtocol_setup_ab_ag_foldtree.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/stepwise/monte_carlo/mover/StepWiseMoveSelectorTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/job_distributors/MPIWorkPoolJobDistributor.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rigid/RigidBodyMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rigid/RotateJumpAxisMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rigid/UniformRigidBody.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match_enzdes_util/InvrotTree.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/comparative_modeling/ExtraThreadingMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/comparative_modeling/ThreadingMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/AchiralResidueTypeTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/AchiralResidueTypeTests_betanov15.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/AchiralResidueTypeTests_betanov16.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/BetaAlphaDisulfideTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/BetaAlphaDisulfideTests_betanov15.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/BetaAlphaDisulfideTests_betanov16.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/CrosslinkerMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/CycpepSymmetryFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/FlipChiralityMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/NMethylationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/NMethylationTests_betanov15.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/NMethylationTests_betanov16.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter_betanov15_Tests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter_betanov16_Tests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/PeptideInternalHbondsMetricTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/PeptideStubMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/RamaMutationSelectorTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cyclic_peptide/SymmetricCycpepAlignTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/FragmentMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/GunnCost.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/PseudocontactShiftEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/WobbleMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fldsgn/SheetConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/sewing/hashing/HasherTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/remodel/RemodelConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/stepwise/modeler/StepWiseMinimizerTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/relax/AcceptToBestMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/relax/AtomCoordinateCstMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/relax/FastRelax.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/filters/PreProlineFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/docking/membrane/MPDockingSetupMoverTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/Loop.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/Loops.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/LoopsFileIO.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/LoopsFileLoader.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/LoopsFoldTree.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loops/LoopsUtil.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rotamer_recovery/RotamerRecovery.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rotamer_recovery/RRComparer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rotamer_recovery/RRReporter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rotamer_recovery/RRReporterSQLite.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/toolbox/pose_manipulation/pose_manipulation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/Bridge.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/BuildManager.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/ConnectRight.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/GrowLeft.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/GrowRight.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/RelativeConnectRight.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/SegmentInsert.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/SegmentRebuild.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/build/SegmentSwap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/AtomicDistanceFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/DdgFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/DdGScan.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/InterfaceHydrophobicResidueContactsFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/InterfaceHbondsFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/LongestContinuousApolarSegmentFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/LongestContinuousPolarSegmentFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/ReadPoseExtraScoreFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/ResidueCountFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/RotamerBoltzmannWeight2.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/simple_filters/TotalSasaFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/BumpGrid.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/ExternalGeomSampler.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/Hasher.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/LigandConformer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/MatchConsolidator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/OccupiedSpaceHash.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/ProteinSCSampler.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/ProteinUpstreamBuilder.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/ScaffoldBuildPoint.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/RigidLigandBuilder.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/match/VoxelSetIterator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/analysis/simple_metrics/SequenceRecoveryMetricTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/analysis/simple_metrics/SimpleMetricProtocolsTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/environment/claims/ClaimTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd2/JobOutputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd2/MultiThreadedJobDistributor.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/stepwise/modeler/align/StepWisePoseAlignerTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fldsgn/filters/HelixPairingFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fldsgn/filters/SecondaryStructureFilterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fldsgn/filters/SheetTopologyFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/backbone_moves/RandomizeBBByRamaPreProTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/residue_selectors/PairedSheetResidueSelectorTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/sewing/data_storage/SmartAssemblyTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/architects/BetaSheetArchitectTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/architects/CompoundArchitectTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/architects/DeNovoArchitectTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/architects/DeNovoMotifArchitectTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nmr/pre/PREMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/nmr/pre/PREEnergy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/HighResEnsemble.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/ligand_scores.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/LigandDockingLoaders.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/packer_palette_compatibility.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/ProtLigEnsemble.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/ResidueTorsionRestraints.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/StartFrom.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/ligand_docking/Transform.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/helical_bundle/HelicalBundlePDBInfoTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/helical_bundle/params_data_storage.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/helical_bundle/PerturbBundleTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/cluster/APCluster.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/frag_picker/FragmentCandidatesTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/frag_picker/TorsionBinIO.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/forge/methods/fold_tree_functions.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/movers/AlignResiduesMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/movers/ExtendChainMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/movers/FoldArchitectMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/design_opt/GreedyOptMutationMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/BackrubMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/FilterReportAsPoseExtraScoresMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/MonteCarloTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/MoverContainer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/MoversTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/MoverFactory.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/PyMOLMoverTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/ScoreTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/SmallMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/ShearMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/TypesetMovers.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/moves/TaskAwareMinMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/design/AntibodyDesignOptions.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/design/AntibodySeqDesign.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pack_daemon/DynamicAggregateFunction.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pack_daemon/EntityCorrespondence.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pack_daemon/MultistateFitnessFunction.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pack_daemon/PackDaemon.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/AtomPairConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/ConstraintsManagerTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/CoordinateConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/ConstraintGeneratorFactory.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/DihedralConstraintGeneratorTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/HydrogenBondConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/ResidueTypeConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_generator/MetalContactsConstraintGenerator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/docking/DockingTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/docking/SetupDockingFoldTree.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loop_modeling/LoopModelerTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loop_modeling/RepackingRefinerTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/energy_based_clustering/EnergyBasedClusteringTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/energy_based_clustering/EnergyBasedClusteringTests_alpha_aa.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/energy_based_clustering/EnergyBasedClusteringTests_oligourea.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/carbohydrates/RingPlaneFlipMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/carbohydrates/TautomerizeAnomerMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/clusters/ClusterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/CreateSequenceMotifOperationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/ConservativeDesignOperationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/DesignAroundOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/DsspDesignOperationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/LimitAromaChi2Operation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/pHVariantTaskOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/ProteinInterfaceDesignOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/PruneBuriedUnsatsOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/ResidueProbDesignOperationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/RestrictNonSurfaceToRepackingOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/RestrictToCDRH3Loop.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/RestrictOperations.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/task_operations/RestrictToLoopsTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pose_creation/PoseFromSequenceMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/quantum_annealing/InteractionGraphSummaryMetricTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/coupled_moves/CoupledMovesProtocolTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/pose_inputters/PDBPoseInputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/pose_inputters/SilentFilePoseInputter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/AddMembraneMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/AddMPLigandMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/FlipMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/MembranePositionFromTopologyMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/MembraneUtil.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/MPLipidAccessibility.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/OptimizeMembranePositionMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/OptimizeProteinEmbeddingMoverTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/SetMembranePositionMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/SpinAroundPartnerMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/TiltMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/TransformIntoMembraneMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/TranslationRotationMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/task_operations/ConsensusLoopDesignOperationTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/NubInitioMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rosetta_scripts/MultiplePoseMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rosetta_scripts/RosettaScriptsJobQueen.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rosetta_scripts/RosettaScriptsParser.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/rosetta_scripts/XmlObjects.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/grafting/GraftingTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/stepwise/monte_carlo/StepWiseMonteCarloTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/symmetry/SymmetricAddMembraneMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/optimize_weights/Arithmetic.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/optimize_weights/DDGBindOptEData.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pack_interface/ProteinProteinInterfaceUpweighterTaskOperation.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/aa_composition/AddHelixSequenceConstraintsMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/aa_composition/AddMHCEpitopeConstraintMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protein_interface_design/movers/LoopLengthChange.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protein_interface_design/movers/AddChainBreak.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_filters/ConstraintScoreCutoffFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/constraint_filters/ShowConstraintsFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/task_operations/AntibodyTaskOps.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protein_interface_design/protein_interface_design.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jd3/jobs/MoverJobTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jumping/Dssp.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jumping/JumpSetup.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesUtilTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/jobdist/PlainSilentFileJobDistributor.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/residue_selector/AntibodyResidueSelectorsTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/stepwise/modeler/rna/stepwise_modeler_rna_util_test.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/metal_interface/RemoveMetalConnectionsMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/generalized_kinematic_closure/GeneralizedKIC.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/generalized_kinematic_closure/GeneralizedKIC_ramaprepro.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/generalized_kinematic_closure/GeneralizedKIC_ramaprepro_NCAA.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/loophash/loophash.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/DivideAndConquerorTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/FoldGraphTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/ExtendedPoseBuilderTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/SegmentPairingTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/StructureDataTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/StructureDataFactoryTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/StructureDataObserverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/components/SegmentTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/legacy_sewing/SewingHasherTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/constraints/AntibodyConstraintTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/mainchain_potential/GenerateMainchainPotentialTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/calc_taskop_movers/ForceDisulfidesMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/util/cout.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/branch_angle/BranchAngleOptimizer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/abscript/FragmentCMTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/abinitio/abscript/RigidChunkTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/indexed_structure_store/DirectSegmentLookup.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/indexed_structure_store/SegmentSequenceProfile.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/indexed_structure_store/FragmentLookup.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/indexed_structure_store/StructureStore.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/HBondCalculatorsTest.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/LigInterfaceConstraints.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/MatchConstraintFileInfo.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/PredockRotCenter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/ResfileAutoRemap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/EnzdesTaskOperations.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/enzdes/EnzScoreFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/analysis/InterfaceDdGMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/analysis/LoopAnalyzerMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/ClassicGrid.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/ScoreNormalization.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/ScoringGridLoader.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/SiteGrid.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/PCSSingleGrid.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/qsar/scoring_grid/PCSMultiGrid.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/vardist_solaccess/VarSolDRotamerDots.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/backbone_moves/local_backbone_mover/LocalBackboneMoverTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/denovo_design/DisulfidizeMover.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/AntibodyInfo.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/antibody/AntibodyCDRGrafterTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/genetic_algorithm/Entity.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/geometry/EmbeddingDef.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/membrane/geometry/Embedding.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protocols.cxxtest.o -Lexternal/lib -Lbuild/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Lbuild/external/debug/linux/3.10/64/x86/gcc/8.3/mpi -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit
/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/debug/linux/3.10/64/x86/gcc/8.3/mpi build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/BitSet.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/BitVector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/dating.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/DenseBoolMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/heap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/in_place_list.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/integer_mapping.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/iter_util.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/LexicographicalIterator.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/minmax.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/numbers.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/OrderedTuple.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/recent_history_queue.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/simulate_mpi.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/small_vector1.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sort.functions.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/string_util.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/type_traits.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/UTools.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/UTracer.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector0.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1.functions.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vector1_bool.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/vectorL.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/sql_database/DatabaseSessionManagerTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/file/file_sys_util.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/file/PathName.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/file/FileName.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/AutoKey.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/ClassKeyMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/ClassKeyVector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/Key4Tuple.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/Key4Vector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/SmallKeyMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/SmallKeyVector.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/keys/UserKey.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/Tag.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/XMLSchemaGeneration.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/tag/validate_w_xsd.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/io/izstream.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/io/FileContentsMap.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/io/zipstream.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/pointer/deep_copy.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/pointer/make_shared.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/thread/ReadWriteMutex.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/graph/ring_detection.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/graph/ArrayPool.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/graph/DisjointSets.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/graph/Graph.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/graph/LowMemGraph.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/factory/Factory.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/BufferedSignalHub.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/PausableSignalHub.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/SignalHub.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/signals/TokenHub.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/json/json_utilitiesTests.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/options/OptionCollection.cxxtest.o build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility/utility.cxxtest.o -Lexternal/lib -Lbuild/src/debug/linux/3.10/64/x86/gcc/8.3/mpi -Lbuild/external/debug/linux/3.10/64/x86/gcc/8.3/mpi -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -lutility -lObjexxFCL -lbasic -lcore.1 -lcore.2 -lcore.3 -lcore.4 -lcore.5 -lcore.6 -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit
scons: done building targets.