More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AngleFunctionTests Test suite: AngleFunctionTests (test/numeric/angle_functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ArrayPoolTests Test suite: ArrayPoolTests (test/utility/graph/ArrayPool.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AmbiguousNMRConstraintTests Test suite: AmbiguousNMRConstraintTests (test/core/scoring/constraints/AmbiguousNMRConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AmbiguousNMRDistanceConstraintTests Test suite: AmbiguousNMRDistanceConstraintTests (test/core/scoring/constraints/AmbiguousNMRDistanceConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AmbiguousConstraintTests Test suite: AmbiguousConstraintTests (test/core/scoring/constraints/AmbiguousConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AmberPeriodicFuncTests Test suite: AmberPeriodicFuncTests (test/core/scoring/func/AmberPeriodicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ArithmeticTests Test suite: ArithmeticTests (test/protocols/optimize_weights/Arithmetic.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AlignPDBInfoToSequencesUtilTests Test suite: AlignPDBInfoToSequencesUtilTests (test/protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesUtilTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AltCodesIOTests Test suite: AltCodesIOTests (test/core/io/alt_codes_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AutoKeyTests Test suite: AutoKeyTests (test/utility/keys/AutoKey.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AcceptToBestMoverTests Test suite: AcceptToBestMoverTests (test/protocols/relax/AcceptToBestMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTests Test suite: AtomTests (test/core/chemical/AtomTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTypeSetTests Test suite: AtomTypeSetTests (test/core/chemical/AtomTypeSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackboneStubConstraintTests Test suite: BackboneStubConstraintTests (test/core/scoring/constraints/BackboneStubConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackboneStubLinearConstraintTests Test suite: BackboneStubLinearConstraintTests (test/core/scoring/constraints/BackboneStubLinearConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackwardsProtocolsFeaturesReporterCreatorTests Test suite: BackwardsProtocolsFeaturesReporterCreatorTests (test/protocols/init/features_reporter_creators.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackwardsProtocolsFilterCreatorTests Test suite: BackwardsProtocolsFilterCreatorTests (test/protocols/init/filter_creators.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BBTorsionSRFDTest Test suite: BBTorsionSRFDTest (test/core/fragment/BBTorsionSRFD.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTypeDatabaseIOTests Test suite: AtomTypeDatabaseIOTests (test/core/chemical/AtomTypeDatabaseIOTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AutomorphismTest Test suite: AutomorphismTest (test/core/chemical/automorphism.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_linconsttail Test suite: AACompositionEnergyTests_linconsttail (test/core/scoring/aa_composition_energy/AACompositionEnergy_linconsttail.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_quadratail More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_consttail Test suite: AACompositionEnergyTests_quadratail (test/core/scoring/aa_composition_energy/AACompositionEnergy_quadratail.cxxtest.hh) Test suite: AACompositionEnergyTests_consttail (test/core/scoring/aa_composition_energy/AACompositionEnergy_consttail.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AlignResiduesMoverTests Test suite: AlignResiduesMoverTests (test/protocols/denovo_design/movers/AlignResiduesMoverTests.cxxtest.hh) ERROR: Cannot open file devel/denovo_design/cat_residues.pdb ERROR:: Exit from: src/core/io/pdb/build_pose_as_is.cc line: 168 ERROR: Unhandled Exception caught by cxxtest: File: src/core/io/pdb/build_pose_as_is.cc:168 [ ERROR ] UtilityExitException ERROR: Cannot open file devel/denovo_design/cat_residues.pdb Command line: ./protocols.test AlignResiduesMoverTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig protocols.test: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protocols.cxxtest.cpp:43: int main(int, char**): Assertion `false' failed. [node8102:mpi_rank_0][error_sighandler] Caught error: Aborted (signal 6) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AspartimidePenaltyEnergyTests Test suite: AspartimidePenaltyEnergyTests (test/core/scoring/methods/AspartimidePenaltyEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddMHCEpitopeConstraintMoverTests Test suite: AddMHCEpitopeConstraintMoverTests (test/protocols/aa_composition/AddMHCEpitopeConstraintMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BicubicSpline_tests Test suite: BicubicSpline_tests (test/numeric/interpolation/spline/BicubicSpline.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_aliphnotpro Test suite: AACompositionEnergyTests_aliphnotpro (test/core/scoring/aa_composition_energy/AACompositionEnergy_aliphnotpro.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_bools Test suite: AACompositionEnergyTests_bools (test/core/scoring/aa_composition_energy/AACompositionEnergy_bools.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ABEGOManagerTest Test suite: ABEGOManagerTest (test/core/sequence/ABEGOManager.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddChainBreakTests Test suite: AddChainBreakTests (test/protocols/protein_interface_design/movers/AddChainBreak.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ArgCationPiEnergyTests Test suite: ArgCationPiEnergyTests (test/core/scoring/methods/ArgCationPiEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_3ACPC Test suite: AACompositionEnergyTests_3ACPC (test/core/scoring/aa_composition_energy/AACompositionEnergy_3ACPC.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_1W1Y Test suite: AACompositionEnergyTests_1W1Y (test/core/scoring/aa_composition_energy/AACompositionEnergy_1W1Y.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_packer Test suite: AACompositionEnergyTests_packer (test/core/scoring/aa_composition_energy/AACompositionEnergy_packer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_10pctaro Test suite: AACompositionEnergyTests_10pctaro (test/core/scoring/aa_composition_energy/AACompositionEnergy_10pctaro.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_2WY Test suite: AACompositionEnergyTests_2WY (test/core/scoring/aa_composition_energy/AACompositionEnergy_2WY.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AngleConstraintTests Test suite: AngleConstraintTests (test/core/scoring/constraints/AngleConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomICoorTests Test suite: AtomICoorTests (test/core/chemical/AtomICoor.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomPairConstraintTests Test suite: AtomPairConstraintTests (test/core/scoring/constraints/AtomPairConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaSheetArchitectTests Test suite: BetaSheetArchitectTests (test/protocols/denovo_design/architects/BetaSheetArchitectTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaTurnDetectionFeaturesTest Test suite: BetaTurnDetectionFeaturesTest (test/protocols/features/BetaTurnDetectionFeatures.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BitSetTests Test suite: BitSetTests (test/utility/BitSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTreeTests Test suite: AtomTreeTests (test/core/kinematics/AtomTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BitVectorTests Test suite: BitVectorTests (test/utility/BitVector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_2aro Test suite: AACompositionEnergyTests_2aro (test/core/scoring/aa_composition_energy/AACompositionEnergy_2aro.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_1W Test suite: AACompositionEnergyTests_1W (test/core/scoring/aa_composition_energy/AACompositionEnergy_1W.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_20pctpro Test suite: AACompositionEnergyTests_20pctpro (test/core/scoring/aa_composition_energy/AACompositionEnergy_20pctpro.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_20pctprofract Test suite: AACompositionEnergyTests_20pctprofract (test/core/scoring/aa_composition_energy/AACompositionEnergy_20pctprofract.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BoundingBoxTests Test suite: BoundingBoxTests (test/numeric/geometry/BoundingBox.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BufferedSignalHubTests Test suite: BufferedSignalHubTests (test/utility/signals/BufferedSignalHub.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomicDistanceFilterTests Test suite: AtomicDistanceFilterTests (test/protocols/simple_filters/AtomicDistanceFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BluePrintTests Test suite: BluePrintTests (test/protocols/parser/BluePrint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AndResidueSelectorTests Test suite: AndResidueSelectorTests (test/core/select/residue_selector/AndResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BondLengthsTests Test suite: BondLengthsTests (test/core/chemical/gasteiger/BondLengths.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CalculatorTest Test suite: CalculatorTest (test/numeric/Calculator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackrubProtocolTests Test suite: BackrubProtocolTests (test/protocols/backrub/BackrubProtocolTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddConstraintsToCurrentConformationMoverTests Test suite: AddConstraintsToCurrentConformationMoverTests (test/protocols/constraint_movers/AddConstraintsToCurrentConformationMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BoundConstraintTests Test suite: BoundConstraintTests (test/core/scoring/constraints/BoundConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CachableDataTypeTests Test suite: CachableDataTypeTests (test/core/pose/datacache/CacheableDataType.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AARepeatEnergyTests Test suite: AARepeatEnergyTests (test/core/scoring/methods/AARepeatEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AlignByResidueSelectorMoverTests Test suite: AlignByResidueSelectorMoverTests (test/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CHIEnergyFunctionTests Test suite: CHIEnergyFunctionTests (test/core/scoring/carbohydrates/CHIEnergyFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_interpolate_linear Test suite: AACompositionEnergyTests_interpolate_linear (test/core/scoring/aa_composition_energy/AACompositionEnergy_interpolate_linear.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AACompositionEnergyTests_quadratic_interpolation Test suite: AACompositionEnergyTests_quadratic_interpolation (test/core/scoring/aa_composition_energy/AACompositionEnergy_quadratic_interpolation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AndJumpSelectorTests Test suite: AndJumpSelectorTests (test/core/select/jump_selector/AndJumpSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateInfoManagerTests Test suite: CarbohydrateInfoManagerTests (test/core/chemical/carbohydrates/CarbohydrateInfoManager.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateDatabaseIOTests Test suite: CarbohydrateDatabaseIOTests (test/core/chemical/carbohydrates/database_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydratePoseIOTests Test suite: CarbohydratePoseIOTests (test/core/io/carbohydrates/pose_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BasicDesignTests Test suite: BasicDesignTests (test/core/pack/basic_design.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateScoringDatabaseIOTests Test suite: CarbohydrateScoringDatabaseIOTests (test/core/scoring/carbohydrates/database_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CartGridTest Test suite: CartGridTest (test/core/grid/CartGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CharmmPeriodicFuncTests Test suite: CharmmPeriodicFuncTests (test/core/scoring/func/CharmmPeriodicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ChromophoreDataReaderTests Test suite: ChromophoreDataReaderTests (test/protocols/chromophore/ChromophoreDataReaderTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AnnotatedSequenceTests Test suite: AnnotatedSequenceTests (test/core/pose/annotated_sequence.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbonHBondEnergyTests Test suite: CarbonHBondEnergyTests (test/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackrubMoverTest Test suite: BackrubMoverTest (test/protocols/moves/BackrubMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ChunkTest Test suite: ChunkTest (test/protocols/nonlocal/Chunk.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CircularGeneral1D_FuncTests Test suite: CircularGeneral1D_FuncTests (test/core/scoring/func/CircularGeneral1D_Func.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BackboneAATests Test suite: BackboneAATests (test/core/scoring/backbone_aa.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CircularHarmonicFuncTests Test suite: CircularHarmonicFuncTests (test/core/scoring/func/CircularHarmonicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CitationManagerTests Test suite: CitationManagerTests (test/basic/citation_manager/CitationManagerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyConstraintTests Test suite: AntibodyConstraintTests (test/protocols/antibody/constraints/AntibodyConstraintTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CircularPowerFuncTests Test suite: CircularPowerFuncTests (test/core/scoring/func/CircularPowerFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CircularSigmoidalFuncTests Test suite: CircularSigmoidalFuncTests (test/core/scoring/func/CircularSigmoidalFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CircularSplineFuncTests Test suite: CircularSplineFuncTests (test/core/scoring/func/CircularSplineFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClusteringTreeNodeTest Test suite: ClusteringTreeNodeTest (test/numeric/ClusteringTreeNode.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClearConstraintsMoverTests Test suite: ClearConstraintsMoverTests (test/protocols/constraint_movers/ClearConstraintsMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CmdlineOptionsOrderTests Test suite: CmdlineOptionsOrderTests (test/basic/options/CmdlineOptionsOrderTests.cxxtest.hh) WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value WARNING: Override of option -fold_cst:violation_skip_basis sets a different value More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ColorUtilTests Test suite: ColorUtilTests (test/numeric/color_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BigBinConstraintTests Test suite: BigBinConstraintTests (test/core/scoring/constraints/BigBinConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTreeCollectionTests Test suite: AtomTreeCollectionTests (test/core/pack/scmin/AtomTreeCollection.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BondedSelectorTests Test suite: BondedSelectorTests (test/core/select/residue_selector/BondedResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CacheableResidueTypeSetsTests Test suite: CacheableResidueTypeSetsTests (test/core/chemical/CacheableResidueTypeSetsTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BinTransitionCalculatorTests Test suite: BinTransitionCalculatorTests (test/core/scoring/bin_transitions/BinTransitionCalculator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AlignmentEnergyTests Test suite: AlignmentEnergyTests (test/protocols/rna/AlignmentEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomTreeDiffTests Test suite: AtomTreeDiffTests (test/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConformationAtomTest Test suite: ConformationAtomTest (test/core/conformation/Atom.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BinSelectorTests Test suite: BinSelectorTests (test/core/select/residue_selector/BinSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BuildManagerTests Test suite: BuildManagerTests (test/protocols/forge/build/BuildManager.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BridgeTests Test suite: BridgeTests (test/protocols/forge/build/Bridge.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CalculatorMetricsTests Test suite: CalculatorMetricsTests (test/core/simple_metrics/metrics/CalculatorMetric.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConsensusSequenceParserTests Test suite: ConsensusSequenceParserTests (test/core/enzymes/consensus_sequence_parsers.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomPairConstraintGeneratorTests Test suite: AtomPairConstraintGeneratorTests (test/protocols/constraint_generator/AtomPairConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CalculatorFilterTests Test suite: CalculatorFilterTests (test/protocols/filters/CalculatorFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstantConstraintTests Test suite: ConstantConstraintTests (test/core/scoring/constraints/ConstantConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstantFuncTests Test suite: ConstantFuncTests (test/core/scoring/func/ConstantFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintGeneratorFactoryTests Test suite: ConstraintGeneratorFactoryTests (test/protocols/constraint_generator/ConstraintGeneratorFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Chains62Tests Test suite: Chains62Tests (test/core/io/chains_62.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddHelixSequenceConstraintsMoverTests Test suite: AddHelixSequenceConstraintsMoverTests (test/protocols/aa_composition/AddHelixSequenceConstraintsMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintScoreCutoffFilterTests Test suite: ConstraintScoreCutoffFilterTests (test/protocols/constraint_filters/ConstraintScoreCutoffFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintSetTests Test suite: ConstraintSetTests (test/core/scoring/constraints/ConstraintSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CartesianBondedEnergyTests Test suite: CartesianBondedEnergyTests (test/core/scoring/methods/CartesianBondedEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConversionsTests Test suite: ConversionsTests (test/numeric/conversions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ContainerMoversTest Test suite: ContainerMoversTest (test/protocols/moves/MoverContainer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateScoringUtilityFunctionTests Test suite: CarbohydrateScoringUtilityFunctionTests (test/core/scoring/carbohydrates/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CloseContactResidueSelectorTests Test suite: CloseContactResidueSelectorTests (test/core/select/residue_selector/CloseContactResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ChemistryNamespaceUtilityFunctionTests Test suite: ChemistryNamespaceUtilityFunctionTests (test/core/chemical/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClaimTests Test suite: ClaimTests (test/protocols/environment/claims/ClaimTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: APClusterTest Test suite: APClusterTest (test/protocols/cluster/APCluster.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddMPLigandMoverTest Test suite: AddMPLigandMoverTest (test/protocols/membrane/AddMPLigandMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ChainSelectorTests Test suite: ChainSelectorTests (test/core/select/residue_selector/ChainSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoordinateConstraintTests Test suite: CoordinateConstraintTests (test/core/scoring/constraints/CoordinateConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BranchAngleOptimizerTest Test suite: BranchAngleOptimizerTest (test/protocols/branch_angle/BranchAngleOptimizer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaAlphaDisulfideTests Test suite: BetaAlphaDisulfideTests (test/protocols/cyclic_peptide/BetaAlphaDisulfideTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoreKinematicsUtilTests Test suite: CoreKinematicsUtilTests (test/core/kinematics/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CountViolFuncTests Test suite: CountViolFuncTests (test/core/scoring/func/CountViolFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CenRotModelEnergyTests Test suite: CenRotModelEnergyTests (test/core/scoring/cenrot/CenRotEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CubicSpline_tests Test suite: CubicSpline_tests (test/numeric/interpolation/spline/CubicSpline.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AchiralResidueTypeTests Test suite: AchiralResidueTypeTests (test/protocols/cyclic_peptide/AchiralResidueTypeTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoMTrack Test suite: CoMTrack (test/protocols/environment/CoMTrack.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AchiralResidueTypeTests_betanov15 Test suite: AchiralResidueTypeTests_betanov15 (test/protocols/cyclic_peptide/AchiralResidueTypeTests_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CstInfoMoverTests Test suite: CstInfoMoverTests (test/protocols/constraint_movers/CstInfoMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomCoordinateCstMoverTests Test suite: AtomCoordinateCstMoverTests (test/protocols/relax/AtomCoordinateCstMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaAlphaDisulfide_betanov15_Tests Test suite: BetaAlphaDisulfide_betanov15_Tests (test/protocols/cyclic_peptide/BetaAlphaDisulfideTests_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AchiralResidueTypeTests_betanov16 Test suite: AchiralResidueTypeTests_betanov16 (test/protocols/cyclic_peptide/AchiralResidueTypeTests_betanov16.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ChainbreakEnergyTests Test suite: ChainbreakEnergyTests (test/core/scoring/methods/ChainbreakEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BumpGridTests Test suite: BumpGridTests (test/protocols/match/BumpGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CompoundArchitectTests Test suite: CompoundArchitectTests (test/protocols/denovo_design/architects/CompoundArchitectTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CartesianBondedEnergyBBDepTests Test suite: CartesianBondedEnergyBBDepTests (test/core/scoring/methods/CartesianBondedEnergyBBDep.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyDesignOptions Test suite: AntibodyDesignOptions (test/protocols/antibody/design/AntibodyDesignOptions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClassicGridTests Test suite: ClassicGridTests (test/protocols/qsar/scoring_grid/ClassicGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyResidueSelectorsTest Test suite: AntibodyResidueSelectorsTest (test/protocols/antibody/residue_selector/AntibodyResidueSelectorsTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaAlphaDisulfide_betanov16_Tests Test suite: BetaAlphaDisulfide_betanov16_Tests (test/protocols/cyclic_peptide/BetaAlphaDisulfideTests_betanov16.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConnectRightTests Test suite: ConnectRightTests (test/protocols/forge/build/ConnectRight.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BasePairConstraintTests Test suite: BasePairConstraintTests (test/protocols/rna/BasePairConstraints.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyDatabase Test suite: AntibodyDatabase (test/protocols/antibody/database/AntibodyDatabase.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConcatenatePosesTests Test suite: ConcatenatePosesTests (test/protocols/simple_moves/ConcatenatePosesMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConformationUtilityFunctionTests Test suite: ConformationUtilityFunctionTests (test/core/conformation/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConnectionArchitectTests Test suite: ConnectionArchitectTests (test/protocols/denovo_design/connection/ConnectionArchitectTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DEERDataTest Test suite: DEERDataTest (test/core/scoring/epr_deer/DEERData_test.cxxtest.hh) Trace: Turning on bounds! Trace: Turning on reverse calculation! Trace: Turning on backbone calculation! 1 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DatabaseResourceLocatorTests Test suite: DatabaseResourceLocatorTests (test/basic/resource_manager/locator/DatabaseResourceLocator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClusterTests Test suite: ClusterTests (test/protocols/antibody/clusters/ClusterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintsManagerTests Test suite: ConstraintsManagerTests (test/protocols/constraint_generator/ConstraintsManagerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DatabaseSessionManagerTests Test suite: DatabaseSessionManagerTests (test/utility/sql_database/DatabaseSessionManagerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConsensusLoopDesignOperationTests Test suite: ConsensusLoopDesignOperationTests (test/protocols/denovo_design/task_operations/ConsensusLoopDesignOperationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DatingUtilitiesTests Test suite: DatingUtilitiesTests (test/utility/dating.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintUtilTests Test suite: ConstraintUtilTests (test/core/scoring/constraints/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DeepCopyOPTests Test suite: DeepCopyOPTests (test/utility/pointer/deep_copy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintsEnergyTests Test suite: ConstraintsEnergyTests (test/core/scoring/constraints/ConstraintsEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DeNovoArchitectTests Test suite: DeNovoArchitectTests (test/protocols/denovo_design/architects/DeNovoArchitectTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DeNovoMotifArchitectTests Test suite: DeNovoMotifArchitectTests (test/protocols/denovo_design/architects/DeNovoMotifArchitectTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DenseBoolMapTests Test suite: DenseBoolMapTests (test/utility/DenseBoolMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CtermAmidationTests Test suite: CtermAmidationTests (test/core/chemical/CtermAmidationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BuriedUnsatPenaltyGraphTests Test suite: BuriedUnsatPenaltyGraphTests (test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CrosslinkerMoverTests Test suite: CrosslinkerMoverTests (test/protocols/cyclic_peptide/CrosslinkerMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DisjointSetsTests Test suite: DisjointSetsTests (test/utility/graph/DisjointSets.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CopyRotamerMoverTests Test suite: CopyRotamerMoverTests (test/protocols/simple_moves/CopyRotamerMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DihedralPairConstraintTests Test suite: DihedralPairConstraintTests (test/core/scoring/constraints/DihedralPairConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DiscreteIntervalEncodingTreeTests Test suite: DiscreteIntervalEncodingTreeTests (test/numeric/DiscreteIntervalEncodingTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DistributionSamplerTest Test suite: DistributionSamplerTest (test/numeric/random/DistributionSampler.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BuriedUnsatPenaltyGraphSymmetricTests Test suite: BuriedUnsatPenaltyGraphSymmetricTests (test/core/pack/guidance_scoreterms/buried_unsat_penalty/graph/BuriedUnsatPenaltyGraphSymmetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DivideAndConquerorTests Test suite: DivideAndConquerorTests (test/protocols/denovo_design/components/DivideAndConquerorTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BetaNov16WithAutoSetupMetalsTests Test suite: BetaNov16WithAutoSetupMetalsTests (test/core/scoring/BetaNov16WithAutoSetupMetalsTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintSetRemappingTests Test suite: ConstraintSetRemappingTests (test/core/scoring/constraints/ConstraintSetRemapping.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConservativeDesignOperationTests Test suite: ConservativeDesignOperationTests (test/protocols/task_operations/ConservativeDesignOperationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BridgeChainsMoverTests Test suite: BridgeChainsMoverTests (test/protocols/denovo_design/connection/BridgeChains.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConstraintIOTests Test suite: ConstraintIOTests (test/core/scoring/constraints/ConstraintIO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CopyDofsTest Test suite: CopyDofsTest (test/core/pose/copydofs/CopyDofsTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateInfoTests Test suite: CarbohydrateInfoTests (test/core/chemical/carbohydrates/CarbohydrateInfo.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DAminoAcidImportTests Test suite: DAminoAcidImportTests (test/core/io/pdb/DAminoAcidImportTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyCDRGrafterTests Test suite: AntibodyCDRGrafterTests (test/protocols/antibody/AntibodyCDRGrafterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ElementsTests Test suite: ElementsTests (test/core/chemical/Elements.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CreateSequenceMotifOperationTests Test suite: CreateSequenceMotifOperationTests (test/protocols/task_operations/CreateSequenceMotifOperationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CycpepSymmetryFilterTests Test suite: CycpepSymmetryFilterTests (test/protocols/cyclic_peptide/CycpepSymmetryFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ContactMapTests Test suite: ContactMapTests (test/protocols/contact_map/ContactMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClashBasedRepackShellTests Test suite: ClashBasedRepackShellTests (test/core/pack/task/operation/ClashBasedRepackShell.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyGraphTests Test suite: EnergyGraphTests (test/core/scoring/EnergyGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyMapTest Test suite: EnergyMapTest (test/core/scoring/EnergyMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DesignAroundOperationTests Test suite: DesignAroundOperationTests (test/protocols/task_operations/DesignAroundOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DEERDataCacheTest Test suite: DEERDataCacheTest (test/core/scoring/epr_deer/DEERDataCache_test.cxxtest.hh) 32 0 33 0.000999001 34 0.001998 35 0.003996 36 0.00599401 37 0.00799201 38 0.00999001 39 0.011988 40 0.013986 41 0.016983 42 0.018981 43 0.021978 44 0.025974 45 0.031968 46 0.038961 47 0.048951 48 0.0599401 49 0.0669331 50 0.0739261 51 0.0729271 52 0.0719281 53 0.0639361 54 0.0569431 55 0.048951 56 0.041958 57 0.034965 58 0.028971 59 0.023976 60 0.018981 61 0.016983 62 0.013986 63 0.011988 64 0.00999001 65 0.00799201 66 0.004995 67 0.002997 68 0.000999001 69 0.000999001 70 0.000999001 71 0.000999001 72 0.000999001 73 0.000999001 74 0 75 0 76 0 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EntityTests Test suite: EntityTests (test/protocols/genetic_algorithm/Entity.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BinarySilentMultiposeTests Test suite: BinarySilentMultiposeTests (test/core/io/silent/binary_protein_silent_multipose.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BinarySilentTests Test suite: BinarySilentTests (test/core/io/silent/binary_protein_silent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ConformationTests Test suite: ConformationTests (test/core/conformation/Conformation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnvPairPotentialTest Test suite: EnvPairPotentialTest (test/core/scoring/EnvPairPotential.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnzdesTaskOperations_Tests Test suite: EnzdesTaskOperations_Tests (test/protocols/enzdes/EnzdesTaskOperations.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DihedralConstraintGeneratorTests Test suite: DihedralConstraintGeneratorTests (test/protocols/constraint_generator/DihedralConstraintGeneratorTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Dunbrack2002Test Test suite: Dunbrack2002Test (test/core/scoring/dunbrack/Dunbrack2002.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DEEREnergyMethodTest Test suite: DEEREnergyMethodTest (test/core/scoring/epr_deer/DEEREnergyMethod_test.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DsspDesignOperationTests Test suite: DsspDesignOperationTests (test/protocols/task_operations/DsspDesignOperationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnzymeDatabaseIOTests Test suite: EnzymeDatabaseIOTests (test/core/enzymes/database_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EulerAnglesTests Test suite: EulerAnglesTests (test/numeric/EulerAngles.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EtableFuncTests Test suite: EtableFuncTests (test/core/scoring/func/EtableFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ExecuteTest Test suite: ExecuteTest (test/basic/execute.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DataLoaderTests Test suite: DataLoaderTests (test/protocols/parser/DataLoaders.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DihedralConstraintTests Test suite: DihedralConstraintTests (test/core/scoring/constraints/DihedralConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoordinateConstraintGeneratorTests Test suite: CoordinateConstraintGeneratorTests (test/protocols/constraint_generator/CoordinateConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ExternalGeomSamplerTests Test suite: ExternalGeomSamplerTests (test/protocols/match/ExternalGeomSampler.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyBasedClusteringTests Test suite: EnergyBasedClusteringTests (test/protocols/energy_based_clustering/EnergyBasedClusteringTests.cxxtest.hh) ERROR: Error in EnergyBasedClusteringProtocol::get_mirror_bin(): Bin "Q" is not valid! ERROR:: Exit from: src/protocols/energy_based_clustering/EnergyBasedClusteringProtocol.cc line: 428 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EPRSpinLabelTest Test suite: EPRSpinLabelTest (test/core/scoring/epr_deer/EPRSpinLabel_test.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DsspTests Test suite: DsspTests (test/protocols/jumping/Dssp.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DdgFilter Test suite: DdgFilter (test/protocols/simple_filters/DdgFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoordSerializationTests Test suite: CoordSerializationTests (test/protocols/features/CoordSerializationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DdGScan Test suite: DdGScan (test/protocols/simple_filters/DdGScan.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EmbeddingDefTest Test suite: EmbeddingDefTest (test/protocols/membrane/geometry/EmbeddingDef.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FactoryTests Test suite: FactoryTests (test/utility/factory/Factory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FA_ElecEnergyTests_pre_talaris Test suite: FA_ElecEnergyTests_pre_talaris (test/core/scoring/elec/FA_ElecEnergy_pre_talaris.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DunbrackEnergyTests_peptoid Test suite: DunbrackEnergyTests_peptoid (test/core/pack/dunbrack/DunbrackEnergyTests_peptoid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EmbeddingTest Test suite: EmbeddingTest (test/protocols/membrane/geometry/Embedding.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FFTTests Test suite: FFTTests (test/numeric/fourier/fft.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FabConstraintTests Test suite: FabConstraintTests (test/core/scoring/constraints/FabConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FadeFuncTests Test suite: FadeFuncTests (test/core/scoring/func/FadeFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FileContentsMapTests Test suite: FileContentsMapTests (test/utility/io/FileContentsMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FileNameTests Test suite: FileNameTests (test/utility/file/FileName.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FileSysUtilTests Test suite: FileSysUtilTests (test/utility/file/file_sys_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FileSystemResourceLocatorTests Test suite: FileSystemResourceLocatorTests (test/basic/resource_manager/locator/FileSystemResourceLocatorTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FieldTests Test suite: FieldTests (test/core/io/pdb/Field.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FilterValueMetricTests Test suite: FilterValueMetricTests (test/protocols/filters/FilterValueMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydrateStereochemTests Test suite: CarbohydrateStereochemTests (test/core/chemical/carbohydrates/stereochem.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ApproximateBuriedUnsatPenaltyTests Test suite: ApproximateBuriedUnsatPenaltyTests (test/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnvSmoothEnergyTests Test suite: EnvSmoothEnergyTests (test/core/scoring/methods/EnvSmoothEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnvironmentJump Test suite: EnvironmentJump (test/protocols/environment/EnvironmentJump.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DunbrackEnergyTests Test suite: DunbrackEnergyTests (test/core/pack/dunbrack/DunbrackEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnvironmentTorsion Test suite: EnvironmentTorsion (test/protocols/environment/EnvironmentTorsion.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FlatHarmonicFuncTests Test suite: FlatHarmonicFuncTests (test/core/scoring/func/FlatHarmonicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FixHisTautomerTest Test suite: FixHisTautomerTest (test/core/pack/task/fix_his_tautomer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometryTests Test suite: CyclicGeometryTests (test/core/scoring/cyclic_geometry.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EntityCorrespondenceTests Test suite: EntityCorrespondenceTests (test/protocols/pack_daemon/EntityCorrespondence.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FoldGraphTests Test suite: FoldGraphTests (test/protocols/denovo_design/components/FoldGraphTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FoldTreeSketch Test suite: FoldTreeSketch (test/core/environment/FoldTreeSketch.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyTaskOps Test suite: AntibodyTaskOps (test/protocols/antibody/task_operations/AntibodyTaskOps.cxxtest.hh) *** './protocols.test AntibodyTaskOps --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 27917 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test AntibodyTaskOps --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodyInfoTests Test suite: AntibodyInfoTests (test/protocols/antibody/AntibodyInfo.cxxtest.hh) *** './protocols.test AntibodyInfoTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 27908 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test AntibodyInfoTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AlignPDBInfoToSequencesTests Test suite: AlignPDBInfoToSequencesTests (test/protocols/pdbinfo_manipulations/AlignPDBInfoToSequencesTests.cxxtest.hh) *** './protocols.test AlignPDBInfoToSequencesTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 27853 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test AlignPDBInfoToSequencesTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AntibodySeqDesign Test suite: AntibodySeqDesign (test/protocols/antibody/design/AntibodySeqDesign.cxxtest.hh) *** './protocols.test AntibodySeqDesign --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 27914 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test AntibodySeqDesign --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FASTERAnnealerTests Test suite: FASTERAnnealerTests (test/core/pack/annealer/FASTERAnnealer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_betanov15_Tests Test suite: CyclicGeometry_betanov15_Tests (test/core/scoring/cyclic_geometry_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FoldTreeTest Test suite: FoldTreeTest (test/core/kinematics/FoldTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DisulfideInsertionMoverTests Test suite: DisulfideInsertionMoverTests (test/protocols/simple_moves/DisulfideInsertionMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BuriedUnsatPenaltyTests Test suite: BuriedUnsatPenaltyTests (test/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltyTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometryTests_nmethyl Test suite: CyclicGeometryTests_nmethyl (test/core/scoring/cyclic_geometry_nmethyl.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GasteigerAtomTypeSetTests Test suite: GasteigerAtomTypeSetTests (test/core/chemical/gasteiger/GasteigerAtomTypeSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainDoubleFuncTests Test suite: GaussianChainDoubleFuncTests (test/core/scoring/func/GaussianChainDoubleFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainFuncTests Test suite: GaussianChainFuncTests (test/core/scoring/func/GaussianChainFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FillAUTOTaskOperationTests Test suite: FillAUTOTaskOperationTests (test/core/pack/task/operation/FillAUTOTaskOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnzScoreFilterTests Test suite: EnzScoreFilterTests (test/protocols/enzdes/EnzScoreFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainGeneralFuncTests Test suite: GaussianChainGeneralFuncTests (test/core/scoring/func/GaussianChainGeneralFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainQuadrupleFuncTests Test suite: GaussianChainQuadrupleFuncTests (test/core/scoring/func/GaussianChainQuadrupleFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FA_ElecEnergyTests Test suite: FA_ElecEnergyTests (test/core/scoring/elec/FA_ElecEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GeneralizedEigenSolverTests Test suite: GeneralizedEigenSolverTests (test/numeric/linear_algebra/GeneralizedEigenSolverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainSingleFuncTests Test suite: GaussianChainSingleFuncTests (test/core/scoring/func/GaussianChainSingleFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CarbohydratePoseUtilityFunctionTests Test suite: CarbohydratePoseUtilityFunctionTests (test/core/pose/carbohydrates/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianChainTripleFuncTests Test suite: GaussianChainTripleFuncTests (test/core/scoring/func/GaussianChainTripleFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GaussianFuncTests Test suite: GaussianFuncTests (test/core/scoring/func/GaussianFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FilterReportAsPoseExtraScoresMoverTests Test suite: FilterReportAsPoseExtraScoresMoverTests (test/protocols/moves/FilterReportAsPoseExtraScoresMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GeometricSolEnergyTests Test suite: GeometricSolEnergyTests (test/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CoupledMovesProtocolTests Test suite: CoupledMovesProtocolTests (test/protocols/coupled_moves/CoupledMovesProtocolTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_nmethyl_betanov15_Tests Test suite: CyclicGeometry_nmethyl_betanov15_Tests (test/core/scoring/cyclic_geometry_nmethyl_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EtableUnModifyPotTests Test suite: EtableUnModifyPotTests (test/core/scoring/etable/EtableUnModifyPot.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DirectSegmentLookupTests Test suite: DirectSegmentLookupTests (test/protocols/indexed_structure_store/DirectSegmentLookup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FiberDiffractionEnergyTest Test suite: FiberDiffractionEnergyTest (test/core/scoring/fiber_diffraction/FiberDiffractionEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GraphTests Test suite: GraphTests (test/utility/graph/Graph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DunbrackEnergyTests_oligourea Test suite: DunbrackEnergyTests_oligourea (test/core/pack/dunbrack/DunbrackEnergyTests_oligourea.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyJobSummaryTests Test suite: EnergyJobSummaryTests (test/protocols/jd3/job_summaries/EnergyJobSummaryTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FlipChiralityMover Test suite: FlipChiralityMover (test/protocols/cyclic_peptide/FlipChiralityMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DDGBindOptEDataTests Test suite: DDGBindOptEDataTests (test/protocols/optimize_weights/DDGBindOptEData.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FASTERInteractionGraphTests Test suite: FASTERInteractionGraphTests (test/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FragmentCMTest Test suite: FragmentCMTest (test/protocols/abinitio/abscript/FragmentCMTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBPHelixAssignmentsTests Test suite: HBPHelixAssignmentsTests (test/protocols/helical_bundle_predict/HBPHelixAssignmentsTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_betanov16_Tests Test suite: CyclicGeometry_betanov16_Tests (test/core/scoring/cyclic_geometry_betanov16.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBPolyTest Test suite: HBPolyTest (test/core/scoring/hbonds/polynomial.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondDatabaseTest Test suite: HBondDatabaseTest (test/core/scoring/hbonds/HBondDatabaseTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: BuriedUnsatPenaltySymmetricTests Test suite: BuriedUnsatPenaltySymmetricTests (test/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenaltySymmetricTests.cxxtest.hh) *** './core.test BuriedUnsatPenaltySymmetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 28591 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test BuriedUnsatPenaltySymmetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondDerivTest Test suite: HBondDerivTest (test/core/scoring/hbonds/HBondDerivTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FragmentLookupTests Test suite: FragmentLookupTests (test/protocols/indexed_structure_store/FragmentLookup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GasteigerAtomTyperTests Test suite: GasteigerAtomTyperTests (test/core/chemical/gasteiger/GasteigerAtomTyper.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondsFadeEnergy Test suite: HBondsFadeEnergy (test/core/scoring/hbonds/HBondsFadeEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FitnessFilterTest Test suite: FitnessFilterTest (test/protocols/recon_design/FitnessFilterTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GenericSimulatedAnnealerTests Test suite: GenericSimulatedAnnealerTests (test/protocols/simple_moves/GenericSimulatedAnnealer.cxxtest.hh) ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 ERROR: Unhandled Exception caught by cxxtest: File: src/core/chemical/residue_io.cc:144 [ ERROR ] UtilityExitException ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' Command line: ./protocols.test GenericSimulatedAnnealerTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig protocols.test: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protocols.cxxtest.cpp:43: int main(int, char**): Assertion `false' failed. [node8102:mpi_rank_0][error_sighandler] Caught error: Aborted (signal 6) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ExtendChainMoverTests Test suite: ExtendChainMoverTests (test/protocols/denovo_design/movers/ExtendChainMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ClashBasedShellSelectorTests Test suite: ClashBasedShellSelectorTests (test/core/pack/task/residue_selector/ClashBasedShellSelectorTests.cxxtest.hh) *** './core.test ClashBasedShellSelectorTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 28814 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test ClashBasedShellSelectorTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DynamicAggregateFunctionTests Test suite: DynamicAggregateFunctionTests (test/protocols/pack_daemon/DynamicAggregateFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FullatomCustomPairDistanceEnergyTests Test suite: FullatomCustomPairDistanceEnergyTests (test/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FavorSequenceProfileTests Test suite: FavorSequenceProfileTests (test/protocols/simple_moves/FavorSequenceProfile.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HarmonicFuncTests Test suite: HarmonicFuncTests (test/core/scoring/func/HarmonicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HasherTests Test suite: HasherTests (test/protocols/match/Hasher.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FastRelaxTests Test suite: FastRelaxTests (test/protocols/relax/FastRelax.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HeaderInformationTests Test suite: HeaderInformationTests (test/core/io/HeaderInformationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HierarchicalDataMapTests Test suite: HierarchicalDataMapTests (test/basic/datacache/HierarchicalDataMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HistogramTests Test suite: HistogramTests (test/numeric/interpolation/Histogram.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GrowLeftTests Test suite: GrowLeftTests (test/protocols/forge/build/GrowLeft.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HomogenousTransformTests Test suite: HomogenousTransformTests (test/numeric/HomogeneousTransform.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HighResEnsembleTests Test suite: HighResEnsembleTests (test/protocols/ligand_docking/HighResEnsemble.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FragmentConstantLengthTest Test suite: FragmentConstantLengthTest (test/core/fragment/ConstantLengthFragments.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GrowRightTests Test suite: GrowRightTests (test/protocols/forge/build/GrowRight.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FragmentMoverTest Test suite: FragmentMoverTest (test/protocols/abinitio/FragmentMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IZStreamTests Test suite: IZStreamTests (test/utility/io/izstream.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HullTest Test suite: HullTest (test/core/membrane/hull.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GlycosyltransferaseMoverTests Test suite: GlycosyltransferaseMoverTests (test/protocols/enzymatic_movers/GlycosyltransferaseMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IdentityFuncTests Test suite: IdentityFuncTests (test/core/scoring/func/IdentityFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ExtraThreadingMover_Tests Test suite: ExtraThreadingMover_Tests (test/protocols/comparative_modeling/ExtraThreadingMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ImportPoseOptionsTests Test suite: ImportPoseOptionsTests (test/core/import_pose/ImportPoseOptions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FullatomDisulfideEnergyTests Test suite: FullatomDisulfideEnergyTests (test/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IndependentBBTorsionSRFDTests Test suite: IndependentBBTorsionSRFDTests (test/core/fragment/IndependentBBTorsionSRFD.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GunnCostTest Test suite: GunnCostTest (test/protocols/abinitio/GunnCost.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_nmethyl_beta_Tests Test suite: CyclicGeometry_nmethyl_beta_Tests (test/core/scoring/cyclic_geometry_nmethyl_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBNetEnergyTests Test suite: HBNetEnergyTests (test/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergyTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceBuilderLoaderTests Test suite: InterfaceBuilderLoaderTests (test/protocols/ligand_docking/LigandDockingLoaders.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondsForDemos Test suite: HBondsForDemos (test/core/scoring/hbonds/HBondsForDemos.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondGraphUtilTests Test suite: HBondGraphUtilTests (test/core/pack/hbonds/HBondGraph_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DisulfidizeMoverTests Test suite: DisulfidizeMoverTests (test/protocols/denovo_design/DisulfidizeMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FoldArchitectMoverTests Test suite: FoldArchitectMoverTests (test/protocols/denovo_design/movers/FoldArchitectMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterchainEnvEnergy Test suite: InterchainEnvEnergy (test/protocols/scoring/InterchainEnvEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FilterFactoryTests Test suite: FilterFactoryTests (test/protocols/filters/FilterFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterpolateTest Test suite: InterpolateTest (test/numeric/interpolate.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FAVirtMoverTests Test suite: FAVirtMoverTests (test/protocols/simple_moves/FAVirtMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ForceDisulfidesMoverTests Test suite: ForceDisulfidesMoverTests (test/protocols/calc_taskop_movers/ForceDisulfidesMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IterUtilTest Test suite: IterUtilTest (test/utility/iter_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FlipMoverTest Test suite: FlipMoverTest (test/protocols/membrane/FlipMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterchainPairEnergy Test suite: InterchainPairEnergy (test/protocols/scoring/InterchainPairEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GeneralizedKIC_Tests Test suite: GeneralizedKIC_Tests (test/protocols/generalized_kinematic_closure/GeneralizedKIC.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JD3NodeManagersTests Test suite: JD3NodeManagersTests (test/protocols/jd3/NodeManagers.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JD3PDBPoseInputterTests Test suite: JD3PDBPoseInputterTests (test/protocols/jd3/pose_inputters/PDBPoseInputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Json_based_cdr_detection_tests Test suite: Json_based_cdr_detection_tests (test/protocols/antibody/grafting/json_based_cdr_detection.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JobGenealogistTests Test suite: JobGenealogistTests (test/protocols/jd3/JobGenealogist.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JobOutputterTests Test suite: JobOutputterTests (test/protocols/jd2/JobOutputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceTest Test suite: InterfaceTest (test/protocols/scoring/Interface.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometryTwoChainTests Test suite: CyclicGeometryTwoChainTests (test/core/scoring/cyclic_geometry_2chain.cxxtest.hh) *** './core.test CyclicGeometryTwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29298 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometryTwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometryTwoChain_nmethyl_Tests Test suite: CyclicGeometryTwoChain_nmethyl_Tests (test/core/scoring/cyclic_geometry_nmethyl_2chain.cxxtest.hh) *** './core.test CyclicGeometryTwoChain_nmethyl_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29302 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometryTwoChain_nmethyl_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GreedyOptMutationMoverTests Test suite: GreedyOptMutationMoverTests (test/protocols/design_opt/GreedyOptMutationMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: KDTreeTests Test suite: KDTreeTests (test/numeric/kdtree/kdtree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Key4TupleTests Test suite: Key4TupleTests (test/utility/keys/Key4Tuple.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_betanov15_TwoChainTests Test suite: CyclicGeometry_betanov15_TwoChainTests (test/core/scoring/cyclic_geometry_betanov15_2chain.cxxtest.hh) *** './core.test CyclicGeometry_betanov15_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29390 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometry_betanov15_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GreenPackerTests Test suite: GreenPackerTests (test/protocols/minimization_packing/GreenPacker.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: KeyMapTests Test suite: KeyMapTests (test/utility/keys/ClassKeyMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Key4VectorTests Test suite: Key4VectorTests (test/utility/keys/Key4Vector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: KeyVectorTests Test suite: KeyVectorTests (test/utility/keys/ClassKeyVector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IdealParametersDatabaseTests Test suite: IdealParametersDatabaseTests (test/core/scoring/methods/CartesianBondedEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HRFDynamicsEnergyTests Test suite: HRFDynamicsEnergyTests (test/core/scoring/HRFDynamicsEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LexicographicalIteratorTests Test suite: LexicographicalIteratorTests (test/utility/LexicographicalIterator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: KarplusFuncTests Test suite: KarplusFuncTests (test/core/scoring/func/KarplusFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FindConsensusSequenceTest Test suite: FindConsensusSequenceTest (test/protocols/recon_design/FindConsensusSequenceTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_nmethyl_beta_TwoChainTests_A Test suite: CyclicGeometry_nmethyl_beta_TwoChainTests_A (test/core/scoring/cyclic_geometry_beta_nmethyl_2chain_A.cxxtest.hh) *** './core.test CyclicGeometry_nmethyl_beta_TwoChainTests_A --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29418 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometry_nmethyl_beta_TwoChainTests_A --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: KofNConstraintTests Test suite: KofNConstraintTests (test/core/scoring/constraints/KofNConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_nmethyl_beta_TwoChainTests_B Test suite: CyclicGeometry_nmethyl_beta_TwoChainTests_B (test/core/scoring/cyclic_geometry_beta_nmethyl_2chain_B.cxxtest.hh) *** './core.test CyclicGeometry_nmethyl_beta_TwoChainTests_B --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29444 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometry_nmethyl_beta_TwoChainTests_B --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigandAreaLoaderTests Test suite: LigandAreaLoaderTests (test/protocols/ligand_docking/LigandDockingLoaders.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ExtendedPoseBuilderTests Test suite: ExtendedPoseBuilderTests (test/protocols/denovo_design/components/ExtendedPoseBuilderTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HelixPairingFilterTests Test suite: HelixPairingFilterTests (test/protocols/fldsgn/filters/HelixPairingFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LinearPenaltyFunctionTests Test suite: LinearPenaltyFunctionTests (test/core/scoring/func/LinearPenaltyFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyBasedClusteringTests_alpha_aa Test suite: EnergyBasedClusteringTests_alpha_aa (test/protocols/energy_based_clustering/EnergyBasedClusteringTests_alpha_aa.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HelicalBundlePDBInfoTests Test suite: HelicalBundlePDBInfoTests (test/protocols/helical_bundle/HelicalBundlePDBInfoTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LocalCoordinateConstraintTests Test suite: LocalCoordinateConstraintTests (test/core/scoring/constraints/LocalCoordinateConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_peptoid_Tests Test suite: CyclicGeometry_peptoid_Tests (test/core/scoring/cyclic_geometry_peptoid.cxxtest.hh) *** './core.test CyclicGeometry_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29475 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometry_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondSelectorTests Test suite: HBondSelectorTests (test/protocols/residue_selectors/HBondSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IfThenFilterTests Test suite: IfThenFilterTests (test/protocols/filters/BasicFilters.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_peptoid_beta_Tests Test suite: CyclicGeometry_peptoid_beta_Tests (test/core/scoring/cyclic_geometry_peptoid_beta.cxxtest.hh) *** './core.test CyclicGeometry_peptoid_beta_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29516 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test CyclicGeometry_peptoid_beta_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterchainJumpSelectorTests Test suite: InterchainJumpSelectorTests (test/core/select/jump_selector/InterchainJumpSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HotspotHashingTests Test suite: HotspotHashingTests (test/protocols/hotspot_hashing/hotspot_hashing.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EtableEnergyTests Test suite: EtableEnergyTests (test/core/scoring/etable/EtableEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InteractionGraphFactoryTests Test suite: InteractionGraphFactoryTests (test/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopTest Test suite: LoopTest (test/protocols/loops/Loop.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HydrogenBondConstraintGeneratorTests Test suite: HydrogenBondConstraintGeneratorTests (test/protocols/constraint_generator/HydrogenBondConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopsFileLoaderTest Test suite: LoopsFileLoaderTest (test/protocols/loops/LoopsFileLoader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondsTest Test suite: HBondsTest (test/core/scoring/hbonds/HBonds.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LowMemGraphTests Test suite: LowMemGraphTests (test/utility/graph/LowMemGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GlycanResidueSelectorTest Test suite: GlycanResidueSelectorTest (test/core/select/residue_selector/GlycanResidueSelectorTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBNetMoverTests Test suite: HBNetMoverTests (test/protocols/hbnet/HBNet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondEnergyTests Test suite: HBondEnergyTests (test/core/scoring/hbonds/HBondEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JumpDownstreamSelectorTests Test suite: JumpDownstreamSelectorTests (test/core/select/residue_selector/JumpDownstreamSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopePredictorExternalTests Test suite: MHCEpitopePredictorExternalTests (test/core/scoring/mhc_epitope_energy/MHCEpitopePredictorExternal.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GraftSwitchMoverTests Test suite: GraftSwitchMoverTests (test/protocols/switches/GraftSwitchMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JumpUpstreamSelectorTests Test suite: JumpUpstreamSelectorTests (test/core/select/residue_selector/JumpUpstreamSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopePredictorMatrixTests Test suite: MHCEpitopePredictorMatrixTests (test/core/scoring/mhc_epitope_energy/MHCEpitopePredictorMatrix.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopePredictorPreLoadedTests Test suite: MHCEpitopePredictorPreLoadedTests (test/core/scoring/mhc_epitope_energy/MHCEpitopePredictorPreLoaded.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMAtomTypeSetTests Test suite: MMAtomTypeSetTests (test/core/chemical/MMAtomTypeSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JumpIndexSelectorTests Test suite: JumpIndexSelectorTests (test/core/select/jump_selector/JumpIndexSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: IsopeptideBondTests Test suite: IsopeptideBondTests (test/core/scoring/IsopeptideBondTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMBondAngleLibraryTests Test suite: MMBondAngleLibraryTests (test/core/scoring/mm/MMBondAngleLibrary.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: DockingTest Test suite: DockingTest (test/protocols/docking/DockingTest.cxxtest.hh) *** './protocols.test DockingTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29777 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test DockingTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMBondAngleScoreTests Test suite: MMBondAngleScoreTests (test/core/scoring/mm/MMBondAngleScore.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopePredictorSVMTests Test suite: MHCEpitopePredictorSVMTests (test/core/scoring/mhc_epitope_energy/MHCEpitopePredictorSVM.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMTorsionLibraryTests Test suite: MMTorsionLibraryTests (test/core/scoring/mm/MMTorsionLibrary.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMTorsionScoreTests Test suite: MMTorsionScoreTests (test/core/scoring/mm/MMTorsionScore.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterGroupInterfaceByVectorSelectorTests Test suite: InterGroupInterfaceByVectorSelectorTests (test/core/select/residue_selector/InterGroupInterfaceByVectorSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LinearChainbreakEnergyTests Test suite: LinearChainbreakEnergyTests (test/core/scoring/methods/LinearChainbreakEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigandConformerTests Test suite: LigandConformerTests (test/protocols/match/LigandConformer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LabelPoseFromResidueSelectorMoverTests Test suite: LabelPoseFromResidueSelectorMoverTests (test/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HPatchInteractionGraphTests Test suite: HPatchInteractionGraphTests (test/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigandScoresUtilTests Test suite: LigandScoresUtilTests (test/protocols/ligand_docking/ligand_scores.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopeEnergySetupTests_initialization Test suite: MHCEpitopeEnergySetupTests_initialization (test/core/scoring/mhc_epitope_energy/MHCEpitopeEnergySetup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MRSClusteringTests Test suite: MRSClusteringTests (test/protocols/multistage_rosetta_scripts/MRSClustering.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPIWorkPoolJobDistributorTests Test suite: MPIWorkPoolJobDistributorTests (test/protocols/jd3/job_distributors/MPIWorkPoolJobDistributor.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopGraphTest Test suite: LoopGraphTest (test/core/scoring/loop_graph/LoopGraphTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopLengthChangeTests Test suite: LoopLengthChangeTests (test/protocols/protein_interface_design/movers/LoopLengthChange.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LogicResidueSelectorTests Test suite: LogicResidueSelectorTests (test/core/select/residue_selector/LogicResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MatchConsolidatorTests Test suite: MatchConsolidatorTests (test/protocols/match/MatchConsolidator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MathMatrix_serialization Test suite: MathMatrix_serialization (test/numeric/MathMatrix_serialization.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MathNTensorTests Test suite: MathNTensorTests (test/numeric/MathNTensor.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InteractionGraphSummaryMetricTests Test suite: InteractionGraphSummaryMetricTests (test/protocols/quantum_annealing/InteractionGraphSummaryMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MathNTensorIOTests Test suite: MathNTensorIOTests (test/numeric/MathNTensor_io.cxxtest.hh) scoring/loop_close/6D_potentials/rna/loop_01/potential.txt.gz More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondCalculatorsTest Test suite: HBondCalculatorsTest (test/protocols/enzdes/HBondCalculatorsTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LongestContinuousApolarSegmentFilterTests Test suite: LongestContinuousApolarSegmentFilterTests (test/protocols/simple_filters/LongestContinuousApolarSegmentFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HBondGraphTests Test suite: HBondGraphTests (test/core/scoring/hbonds/graph/HBondGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MinMaxTest Test suite: MinMaxTest (test/utility/minmax.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopeConstraintTests Test suite: MHCEpitopeConstraintTests (test/core/scoring/mhc_epitope_energy/MHCEpitopeConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MetricValueIOTest Test suite: MetricValueIOTest (test/core/util/MetricValueIO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MinMultiHarmonicFuncTests Test suite: MinMultiHarmonicFuncTests (test/core/scoring/func/MinMultiHarmonicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceHbondsFilterTests Test suite: InterfaceHbondsFilterTests (test/protocols/simple_filters/InterfaceHbondsFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LongestContinuousPolarSegmentFilterTests Test suite: LongestContinuousPolarSegmentFilterTests (test/protocols/simple_filters/LongestContinuousPolarSegmentFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoophashTest Test suite: LoophashTest (test/protocols/loophash/loophash.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MixtureFuncTests Test suite: MixtureFuncTests (test/core/scoring/func/MixtureFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigInterfaceConstraintsTest Test suite: LigInterfaceConstraintsTest (test/protocols/enzdes/LigInterfaceConstraints.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InvrotTreeTest Test suite: InvrotTreeTest (test/protocols/match_enzdes_util/InvrotTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: EnergyBasedClusteringTests_oligourea Test suite: EnergyBasedClusteringTests_oligourea (test/protocols/energy_based_clustering/EnergyBasedClusteringTests_oligourea.cxxtest.hh) *** './protocols.test EnergyBasedClusteringTests_oligourea --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 30082 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test EnergyBasedClusteringTests_oligourea --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LinMemInteractionGraphTests Test suite: LinMemInteractionGraphTests (test/core/pack/interaction_graph/LinMemInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoveMapBuilderLoaderTests Test suite: MoveMapBuilderLoaderTests (test/protocols/ligand_docking/LigandDockingLoaders.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigandDockTest Test suite: LigandDockTest (test/apps/public/ligand_docking/ligand_dock.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopsFileIOTest Test suite: LoopsFileIOTest (test/protocols/loops/LoopsFileIO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MultiDimensionalHistogramTests Test suite: MultiDimensionalHistogramTests (test/numeric/MultiDimensionalHistogram.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopAnalyzerMoverTests Test suite: LoopAnalyzerMoverTests (test/protocols/analysis/LoopAnalyzerMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MultiThreadedJobDistributorTests Test suite: MultiThreadedJobDistributorTests (test/protocols/jd2/MultiThreadedJobDistributor.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FoldTreeFromMotifTests Test suite: FoldTreeFromMotifTests (test/protocols/simple_moves/FoldTreeFromMotif.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JacobiLoopClosureMoverTests Test suite: JacobiLoopClosureMoverTests (test/protocols/loops/closers/JacobiLoopClosureMover.cxxtest.hh) ERROR: The loop in combination with the MoveMap has 0 free residues, please correct loop and/or MoveMap ERROR:: Exit from: src/protocols/loops/loop_closure/jacobi/JacobiLoopClosureMover.cc line: 467 ERROR: Loop is incorrectly defined: loop.start() >= loop.stop() ERROR:: Exit from: src/protocols/loops/loop_closure/jacobi/JacobiLoopClosureMover.cc line: 71 ERROR: jump point exists within the loop: fix the fold-tree or initialize the mover with a different loop. ERROR:: Exit from: src/protocols/loops/loop_closure/jacobi/JacobiLoopClosureMover.cc line: 516 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MultistateFitnessFunctionTest Test suite: MultistateFitnessFunctionTest (test/protocols/pack_daemon/MultistateFitnessFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MolFileIOReaderTests Test suite: MolFileIOReaderTests (test/core/chemical/sdf/MolFileIOReader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FragmentCandidatesTests Test suite: FragmentCandidatesTests (test/protocols/frag_picker/FragmentCandidatesTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: HbondMetricTests Test suite: HbondMetricTests (test/core/simple_metrics/HbondMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LK_BallEnergyTests Test suite: LK_BallEnergyTests (test/core/scoring/lkball/LK_BallEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MakeCanonicalHelixTest Test suite: MakeCanonicalHelixTest (test/protocols/membrane/benchmark/MakeCanonicalHelixTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopsTest Test suite: LoopsTest (test/protocols/loops/Loops.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMTorsionEnergyTests Test suite: MMTorsionEnergyTests (test/core/scoring/methods/MMTorsionEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopsUtilTest Test suite: LoopsUtilTest (test/protocols/loops/LoopsUtil.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LimitAromaChi2OperationTests Test suite: LimitAromaChi2OperationTests (test/protocols/task_operations/LimitAromaChi2Operation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MatchConstraintFileInfoTest Test suite: MatchConstraintFileInfoTest (test/protocols/enzdes/MatchConstraintFileInfo.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NVlookupTests Test suite: NVlookupTests (test/core/scoring/nv/NVlookup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MHCEpitopeEnergyTests_Scoring Test suite: MHCEpitopeEnergyTests_Scoring (test/core/scoring/mhc_epitope_energy/MHCEpitopeEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MinimalClashHashTest Test suite: MinimalClashHashTest (test/numeric/geometry/hashing/MinimalClashHash.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MMBondAngleEnergyTests Test suite: MMBondAngleEnergyTests (test/core/scoring/methods/MMBondAngleEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPDockingSetupMoverTest Test suite: MPDockingSetupMoverTest (test/protocols/docking/membrane/MPDockingSetupMoverTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GraftingTest Test suite: GraftingTest (test/protocols/grafting/GraftingTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: JumpingTest Test suite: JumpingTest (test/protocols/jumping/JumpSetup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoveMapFactoryTests Test suite: MoveMapFactoryTests (test/core/select/movemap/MoveMapFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: FeaturesReporterTests Test suite: FeaturesReporterTests (test/protocols/features/FeaturesReporterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NCAACentroidResidueTypeTests Test suite: NCAACentroidResidueTypeTests (test/core/chemical/NCAACentroidResidueTypeTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NewSEWINGHasherTests Test suite: NewSEWINGHasherTests (test/protocols/sewing/hashing/HasherTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NomenclatureManagerTestsWCL Test suite: NomenclatureManagerTestsWCL (test/core/io/NomenclatureManagerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NomenclatureManagerTestsWOCL Test suite: NomenclatureManagerTestsWOCL (test/core/io/NomenclatureManagerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoveMapTest Test suite: MoveMapTest (test/core/kinematics/MoveMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NonResidueTypeConstraintTests Test suite: NonResidueTypeConstraintTests (test/core/scoring/constraints/NonResidueTypeConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MembranePositionFromTopologyMoverTest Test suite: MembranePositionFromTopologyMoverTest (test/protocols/membrane/MembranePositionFromTopologyMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LocalBackboneMoverTests Test suite: LocalBackboneMoverTests (test/protocols/backbone_moves/local_backbone_mover/LocalBackboneMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMerSVMEnergyTests Test suite: NMerSVMEnergyTests (test/core/scoring/methods/NMerSVMEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoversTest Test suite: MoversTest (test/protocols/moves/MoversTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NumericFunctionsTests Test suite: NumericFunctionsTests (test/numeric/numeric.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NumericUtilTests Test suite: NumericUtilTests (test/numeric/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NamedAngleConstraintTests Test suite: NamedAngleConstraintTests (test/core/scoring/constraints/NamedAngleConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceDdGMoverTests Test suite: InterfaceDdGMoverTests (test/protocols/analysis/InterfaceDdGMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MSDMoverTest Test suite: MSDMoverTest (test/protocols/recon_design/MSDMoverTest.cxxtest.hh) constraint 1 ResidueTypeConstraint; seqpos: 1; AAname: ; rsd_type_name3: ALA; favor_native_bonus: 0.5 constraint 2 ResidueTypeConstraint; seqpos: 1; AAname: ; rsd_type_name3: CYS; favor_native_bonus: 0.5 constraint 3 ResidueTypeConstraint; seqpos: 1; AAname: ; rsd_type_name3: ASP; favor_native_bonus: 0.5 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NamedAtomPairConstraintTests Test suite: NamedAtomPairConstraintTests (test/core/scoring/constraints/NamedAtomPairConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopsFoldTreeTest Test suite: LoopsFoldTreeTest (test/protocols/loops/LoopsFoldTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OneDHistogramTests Test suite: OneDHistogramTests (test/numeric/histograms/OneDHistogram.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NVscoreTests Test suite: NVscoreTests (test/core/scoring/nv/NVscore.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OccupiedSpaceHashTests Test suite: OccupiedSpaceHashTests (test/protocols/match/OccupiedSpaceHash.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AddMembraneMoverTest Test suite: AddMembraneMoverTest (test/protocols/membrane/AddMembraneMover.cxxtest.hh) *** './protocols.test AddMembraneMoverTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 27847 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./protocols.test AddMembraneMoverTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OmegaPreferencesFunctionTests Test suite: OmegaPreferencesFunctionTests (test/core/scoring/carbohydrates/OmegaPreferencesFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OptionCollectionTests Test suite: OptionCollectionTests (test/utility/options/OptionCollection.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OptionsSystemTests Test suite: OptionsSystemTests (test/basic/options/options_system.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: AtomicDepthTests Test suite: AtomicDepthTests (test/core/scoring/atomic_depth/AtomicDepth.cxxtest.hh) *** './core.test AtomicDepthTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 28055 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test AtomicDepthTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMRDummySpinlabelEnsembleTests Test suite: NMRDummySpinlabelEnsembleTests (test/core/scoring/nmr/NMRDummySpinlabelEnsemble.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrbitalTests Test suite: OrbitalTests (test/core/chemical/OrbitalTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NativeSelectorTests Test suite: NativeSelectorTests (test/protocols/residue_selectors/NativeSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NetChargeEnergyTests_packer Test suite: NetChargeEnergyTests_packer (test/core/scoring/netcharge_energy/NetChargeEnergyTests_packer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NetChargeEnergyTests_tailfxns Test suite: NetChargeEnergyTests_tailfxns (test/core/scoring/netcharge_energy/NetChargeEnergyTests_tailfxns.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MutateResidueTests Test suite: MutateResidueTests (test/protocols/simple_moves/MutateResidue.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrderedTupleTests Test suite: OrderedTupleTests (test/utility/OrderedTuple.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrbitalTypeSetTests Test suite: OrbitalTypeSetTests (test/core/chemical/orbitals/OrbitalTypeSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LigandMetalContactSelectorTests Test suite: LigandMetalContactSelectorTests (test/protocols/residue_selectors/LigandMetalContactSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCATests Test suite: PCATests (test/numeric/PCA.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GeneralizedKIC_Tests_ramaprepro Test suite: GeneralizedKIC_Tests_ramaprepro (test/protocols/generalized_kinematic_closure/GeneralizedKIC_ramaprepro.cxxtest.hh) *** './protocols.test GeneralizedKIC_Tests_ramaprepro --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 31109 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test GeneralizedKIC_Tests_ramaprepro --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GeneralizedKIC_Tests_ramaprepro_NCAA Test suite: GeneralizedKIC_Tests_ramaprepro_NCAA (test/protocols/generalized_kinematic_closure/GeneralizedKIC_ramaprepro_NCAA.cxxtest.hh) *** './protocols.test GeneralizedKIC_Tests_ramaprepro_NCAA --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 31115 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test GeneralizedKIC_Tests_ramaprepro_NCAA --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GenerateMainchainPotentialTests Test suite: GenerateMainchainPotentialTests (test/protocols/mainchain_potential/GenerateMainchainPotentialTests.cxxtest.hh) *** './protocols.test GenerateMainchainPotentialTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 31123 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test GenerateMainchainPotentialTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NetChargeEnergyTests_packer_symm Test suite: NetChargeEnergyTests_packer_symm (test/core/scoring/netcharge_energy/NetChargeEnergyTests_packer_symm.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: GlycanTreeSetTests Test suite: GlycanTreeSetTests (test/core/pose/carbohydrates/GlycanTreeSetTests.cxxtest.hh) *** './core.test GlycanTreeSetTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 31183 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test GlycanTreeSetTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NotResidueSelectorTests Test suite: NotResidueSelectorTests (test/core/select/residue_selector/NotResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NotJumpSelectorTests Test suite: NotJumpSelectorTests (test/core/select/jump_selector/NotJumpSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MirrorSymmetricConformationTests Test suite: MirrorSymmetricConformationTests (test/core/conformation/symmetry/MirrorSymmetricConformation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NumNeighborsSelectorTests Test suite: NumNeighborsSelectorTests (test/core/select/residue_selector/NumNeighborsSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPSpanAngleEnergyTests Test suite: MPSpanAngleEnergyTests (test/core/scoring/membrane/MPSpanAngle.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Neighbor_CalculatorsTests Test suite: Neighbor_CalculatorsTests (test/protocols/pose_metric_calculators/Neighbor_Calculators.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDBPoseMapTests Test suite: PDBPoseMapTests (test/core/pose/PDBPoseMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPFastRelaxFoldTreeTest Test suite: MPFastRelaxFoldTreeTest (test/protocols/relax/membrane/MPFastRelaxFoldTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDBReaderTests Test suite: PDBReaderTests (test/core/io/pdb/pdb_reader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NCAADunbrackTests Test suite: NCAADunbrackTests (test/core/pack/dunbrack/NCAA_dunbrack.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMRSpinlabelTests Test suite: NMRSpinlabelTests (test/core/scoring/nmr/NMRSpinlabel.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NonlocalUtilTest Test suite: NonlocalUtilTest (test/protocols/nonlocal/NonlocalUtil.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NCAADunbrackTests_betanov15 Test suite: NCAADunbrackTests_betanov15 (test/core/pack/dunbrack/NCAA_dunbrack_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPRangeRelaxMover Test suite: MPRangeRelaxMover (test/protocols/relax/membrane/MPRangeRelaxMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMethylationTests Test suite: NMethylationTests (test/protocols/cyclic_peptide/NMethylationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMethylationTests_betanov15 Test suite: NMethylationTests_betanov15 (test/protocols/cyclic_peptide/NMethylationTests_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NPDHBondInteractionGraphTests Test suite: NPDHBondInteractionGraphTests (test/core/pack/interaction_graph/NPDHBondInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OccludedHbondSolEnergyTests Test suite: OccludedHbondSolEnergyTests (test/core/scoring/geometric_solvation/OccludedHbondSolEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NeighborhoodResidueSelectorTests Test suite: NeighborhoodResidueSelectorTests (test/core/select/residue_selector/NeighborhoodResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrResidueSelectorTests Test suite: OrResidueSelectorTests (test/core/select/residue_selector/OrResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OperateOnResidueSubsetTests Test suite: OperateOnResidueSubsetTests (test/core/pack/task/operation/OperateOnResidueSubset.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPSpanInsertionEnergyTests Test suite: MPSpanInsertionEnergyTests (test/core/scoring/membrane/MPSpanInsertion.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrJumpSelectorTests Test suite: OrJumpSelectorTests (test/core/select/jump_selector/OrJumpSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MultiplePoseMoverTests Test suite: MultiplePoseMoverTests (test/protocols/rosetta_scripts/MultiplePoseMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: LoopModelerTests Test suite: LoopModelerTests (test/protocols/loop_modeling/LoopModelerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OmegaTetherTests Test suite: OmegaTetherTests (test/core/scoring/OmegaTether.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PathNameTests Test suite: PathNameTests (test/utility/file/PathName.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PausableSignalHubTests Test suite: PausableSignalHubTests (test/utility/signals/PausableSignalHub.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PartialAtomIDTests Test suite: PartialAtomIDTests (test/core/id/PartialAtomIDTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ParticleSwarmMinimizerTests Test suite: ParticleSwarmMinimizerTests (test/core/optimization/ParticleSwarmMinimizer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OptimizeProteinEmbeddingMoverTest Test suite: OptimizeProteinEmbeddingMoverTest (test/protocols/membrane/OptimizeProteinEmbeddingMoverTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrderedFragSetTest Test suite: OrderedFragSetTest (test/core/fragment/OrderedFragSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NMethylationTests_betanov16 Test suite: NMethylationTests_betanov16 (test/protocols/cyclic_peptide/NMethylationTests_betanov16.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPResidueLipophilicityTests Test suite: MPResidueLipophilicityTests (test/core/scoring/membrane/MPResidueLipophilicity.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeriodicFuncTests Test suite: PeriodicFuncTests (test/core/scoring/func/PeriodicFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MembraneInfoTest Test suite: MembraneInfoTest (test/core/conformation/membrane/MembraneInfo.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MetalContactsConstraintGeneratorTests Test suite: MetalContactsConstraintGeneratorTests (test/protocols/constraint_generator/MetalContactsConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NubInitioLoopClosureMoverTests Test suite: NubInitioLoopClosureMoverTests (test/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceHydrophobicResidueContactsFilterTests Test suite: InterfaceHydrophobicResidueContactsFilterTests (test/protocols/simple_filters/InterfaceHydrophobicResidueContactsFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPHelicalityTests Test suite: MPHelicalityTests (test/core/scoring/membrane/MPHelicality.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PolycubicSplineTests Test suite: PolycubicSplineTests (test/numeric/interpolation/spline/PolycubicSpline.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDBInfoTests Test suite: PDBInfoTests (test/core/pose/PDBInfo.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OrbitalsEnergyTests Test suite: OrbitalsEnergyTests (test/core/scoring/orbitals/OrbitalsScore.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ImplicitLipidInfo Test suite: ImplicitLipidInfo (test/core/conformation/membrane/ImplicitLipidInfo.cxxtest.hh) *** './core.test ImplicitLipidInfo --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 31792 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test ImplicitLipidInfo --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSMultiGridTest Test suite: PCSMultiGridTest (test/protocols/qsar/scoring_grid/PCSMultiGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseRNAUtilTests Test suite: PoseRNAUtilTests (test/core/pose/rna/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSSingleGridTest Test suite: PCSSingleGridTest (test/protocols/qsar/scoring_grid/PCSSingleGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: P_AA_pp_Energy_SymGlyTests Test suite: P_AA_pp_Energy_SymGlyTests (test/core/scoring/methods/P_AA_pp_Energy_symmgly.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDBSilentStruct_Tests Test suite: PDBSilentStruct_Tests (test/core/io/silent/pdb_silent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OversaturatedHbondAcceptorFilterTests Test suite: OversaturatedHbondAcceptorFilterTests (test/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OversaturatedHbondAcceptorFilter_betanov15_Tests Test suite: OversaturatedHbondAcceptorFilter_betanov15_Tests (test/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter_betanov15_Tests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSTensorOptimizerTests Test suite: PCSTensorOptimizerTests (test/protocols/nmr/pcs/PCSTensorOptimizer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PairEnergyTests Test suite: PairEnergyTests (test/core/scoring/methods/PairEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: P_AA_EnergyTests Test suite: P_AA_EnergyTests (test/core/scoring/methods/P_AA_Energy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OversaturatedHbondAcceptorFilter_betanov16_Tests Test suite: OversaturatedHbondAcceptorFilter_betanov16_Tests (test/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter_betanov16_Tests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeptoidResidueTypeTests Test suite: PeptoidResidueTypeTests (test/core/chemical/PeptoidResidueTypeTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProbUtil Test suite: ProbUtil (test/numeric/prob_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProtLigEnsembleTests Test suite: ProtLigEnsembleTests (test/protocols/ligand_docking/ProtLigEnsemble.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PackDaemonTest Test suite: PackDaemonTest (test/protocols/pack_daemon/PackDaemon.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoverJobTests Test suite: MoverJobTests (test/protocols/jd3/jobs/MoverJobTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: P_AA_pp_EnergyTests Test suite: P_AA_pp_EnergyTests (test/core/scoring/methods/P_AA_pp_Energy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ContactOrderEnergy_Tests Test suite: ContactOrderEnergy_Tests (test/core/scoring/methods/ContactOrderEnergy.cxxtest.hh) *** './core.test ContactOrderEnergy_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29128 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test ContactOrderEnergy_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PairedSheetResidueSelectorTests Test suite: PairedSheetResidueSelectorTests (test/protocols/denovo_design/residue_selectors/PairedSheetResidueSelectorTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PhiSelectorTests Test suite: PhiSelectorTests (test/core/select/residue_selector/PhiSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PolyaramidBackboneMinimizeTests Test suite: PolyaramidBackboneMinimizeTests (test/core/optimization/PolyaramidBackboneMinimize.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PerturbBundleTests Test suite: PerturbBundleTests (test/protocols/helical_bundle/PerturbBundleTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: QuaternionTests Test suite: QuaternionTests (test/numeric/Quaternion.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PyMOLMoverTest Test suite: PyMOLMoverTest (test/protocols/moves/PyMOLMoverTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_betanov16_TwoChainTests Test suite: CyclicGeometry_betanov16_TwoChainTests (test/core/scoring/cyclic_geometry_betanov16_2chain.cxxtest.hh) *** './core.test CyclicGeometry_betanov16_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29402 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test CyclicGeometry_betanov16_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseIteratorTests Test suite: PoseIteratorTests (test/core/select/iterators.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinUpstreamBuilderTests Test suite: ProteinUpstreamBuilderTests (test/protocols/match/ProteinUpstreamBuilder.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_nmethyl_betanov15_TwoChainTests Test suite: CyclicGeometry_nmethyl_betanov15_TwoChainTests (test/core/scoring/cyclic_geometry_betanov15_nmethyl_2chain.cxxtest.hh) *** './core.test CyclicGeometry_nmethyl_betanov15_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29460 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test CyclicGeometry_nmethyl_betanov15_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDBPoseOutputterTests Test suite: PDBPoseOutputterTests (test/protocols/jd3/pose_outputters/PDBPoseOutputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ParamsDataStorageTests Test suite: ParamsDataStorageTests (test/protocols/helical_bundle/params_data_storage.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDMolToRestypeTests Test suite: RDMolToRestypeTests (test/core/chemical/rdkit/RDMolToRestype.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseFromSequenceMoverTests Test suite: PoseFromSequenceMoverTests (test/protocols/pose_creation/PoseFromSequenceMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseFromPDBLoaderTests Test suite: PoseFromPDBLoaderTests (test/core/import_pose/PoseResourceLoader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProClosureEnergyTests_noringclose Test suite: ProClosureEnergyTests_noringclose (test/core/scoring/methods/ProClosureEnergy_noringclose.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PolylinearInterpolationTests Test suite: PolylinearInterpolationTests (test/core/pack/dunbrack/PolylinearInterpolation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MonteCarloTests Test suite: MonteCarloTests (test/protocols/moves/MonteCarloTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProtectedConf Test suite: ProtectedConf (test/protocols/environment/ProtectedConf.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProClosureEnergyTests Test suite: ProClosureEnergyTests (test/core/scoring/methods/ProClosureEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeptideInternalHbondsMetricTests Test suite: PeptideInternalHbondsMetricTests (test/protocols/cyclic_peptide/PeptideInternalHbondsMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PointMutScanDriverTests Test suite: PointMutScanDriverTests (test/protocols/pmut_scan/PointMutScanDriver.cxxtest.hh) Attempting to use an MPI routine after finalizing MPICH More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSEnergyTests Test suite: PCSEnergyTests (test/protocols/nmr/pcs/PCSEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PackerTaskTests Test suite: PackerTaskTests (test/core/pack/task/PackerTask.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PredockRotCenterTest Test suite: PredockRotCenterTest (test/protocols/enzdes/PredockRotCenter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinSCSamplerTests Test suite: ProteinSCSamplerTests (test/protocols/match/ProteinSCSampler.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RRComparerTests Test suite: RRComparerTests (test/protocols/rotamer_recovery/RRComparer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinProteinInterfaceUpweighterTests Test suite: ProteinProteinInterfaceUpweighterTests (test/protocols/pack_interface/ProteinProteinInterfaceUpweighterTaskOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseFromSFRBuilderTests Test suite: PoseFromSFRBuilderTests (test/core/io/pose_from_sfr/PoseFromSFRBuilder.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Ramachandran2BTests Test suite: Ramachandran2BTests (test/core/scoring/Ramachandran2B.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: QueryDatabaseTests Test suite: QueryDatabaseTests (test/protocols/indexed_structure_store/search/QueryDatabase.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MPLipidAccessibilityTest Test suite: MPLipidAccessibilityTest (test/protocols/membrane/MPLipidAccessibility.cxxtest.hh) *** './protocols.test MPLipidAccessibilityTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32637 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test MPLipidAccessibilityTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RandomSystemTests Test suite: RandomSystemTests (test/numeric/random.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinInterfaceDesignTests Test suite: ProteinInterfaceDesignTests (test/protocols/protein_interface_design/protein_interface_design.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDCDataSymmetryTests Test suite: RDCDataSymmetryTests (test/core/scoring/nmr/rdc/RDCData_Symmetry.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MRSJobQueenTests Test suite: MRSJobQueenTests (test/protocols/multistage_rosetta_scripts/MRSJobQueen.cxxtest.hh) *** './protocols.test MRSJobQueenTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32719 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test MRSJobQueenTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDB_IO Test suite: PDB_IO (test/core/io/PDB_IO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReadWriteMutexTests Test suite: ReadWriteMutexTests (test/utility/thread/ReadWriteMutex.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RecentHistoryQueueTests Test suite: RecentHistoryQueueTests (test/utility/recent_history_queue.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PREEnergyTests Test suite: PREEnergyTests (test/protocols/nmr/pre/PREEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReadPoseExtraScoreFilter Test suite: ReadPoseExtraScoreFilter (test/protocols/simple_filters/ReadPoseExtraScoreFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PREMoverTests Test suite: PREMoverTests (test/protocols/nmr/pre/PREMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseManipulationTests Test suite: PoseManipulationTests (test/protocols/toolbox/pose_manipulation/pose_manipulation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReadResidueCoordinatesFromPDBTests Test suite: ReadResidueCoordinatesFromPDBTests (test/protocols/chromophore/ReadResidueCoordinatesFromPDBTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDCDataTests Test suite: RDCDataTests (test/core/scoring/nmr/rdc/RDCData.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RecordDefIOTests Test suite: RecordDefIOTests (test/core/io/pdb/record_def_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RegExManager_tests Test suite: RegExManager_tests (test/protocols/antibody/grafting/regex_manager.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseTests Test suite: PoseTests (test/core/pose/Pose.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RegionTest Test suite: RegionTest (test/protocols/nonlocal/Region.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PreProlineFilterTests Test suite: PreProlineFilterTests (test/protocols/denovo_design/filters/PreProlineFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RG_Energy_Tests Test suite: RG_Energy_Tests (test/core/scoring/methods/RG_Energy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MinimizerTests Test suite: MinimizerTests (test/core/optimization/Minimizer.cxxtest.hh) *** './core.test MinimizerTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32829 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test MinimizerTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReservoirSamplingTests Test suite: ReservoirSamplingTests (test/numeric/random/reservoir_sample.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResFilterFactoryTests Test suite: ResFilterFactoryTests (test/core/pack/task/operation/ResFilterFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDCEnergyTests Test suite: RDCEnergyTests (test/protocols/nmr/rdc/RDCEnergy.cxxtest.hh) [ WARNING ] Resetting the global tracer options, which have already been set. [ WARNING ] This will not affect Tracers which are already initialized. More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RNA_ScoreFunctionTest Test suite: RNA_ScoreFunctionTest (test/core/scoring/test_rna_sfxn.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PruneBuriedUnsatsOperationTests Test suite: PruneBuriedUnsatsOperationTests (test/protocols/task_operations/PruneBuriedUnsatsOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Regex_based_cdr_detection_tests Test suite: Regex_based_cdr_detection_tests (test/protocols/antibody/grafting/regex_based_cdr_detection.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResLvlTaskOperationFactoryTests Test suite: ResLvlTaskOperationFactoryTests (test/core/pack/task/operation/ResLvlTaskOperationFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MolFileIODataTests Test suite: MolFileIODataTests (test/core/chemical/sdf/MolFileIOData.cxxtest.hh) *** './core.test MolFileIODataTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32869 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test MolFileIODataTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MotifGraftMoverTests Test suite: MotifGraftMoverTests (test/protocols/motif_grafting/MotifGraftMover.cxxtest.hh) *** './protocols.test MotifGraftMoverTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32890 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test MotifGraftMoverTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RTConstraintTests Test suite: RTConstraintTests (test/core/scoring/constraints/RTConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDCMultiSetSymmetryTests Test suite: RDCMultiSetSymmetryTests (test/core/scoring/nmr/rdc/RDCMultiSet_Symmetry.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MoverFactoryTests Test suite: MoverFactoryTests (test/protocols/moves/MoverFactory.cxxtest.hh) *** './protocols.test MoverFactoryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32934 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test MoverFactoryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueRangesTests Test suite: ResidueRangesTests (test/core/select/residue_selector/ResidueRanges.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResiduePropertiesTests Test suite: ResiduePropertiesTests (test/core/chemical/ResidueProperties.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RDCMultiSetTests Test suite: RDCMultiSetTests (test/core/scoring/nmr/rdc/RDCMultiSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinSilentReportTests Test suite: ProteinSilentReportTests (test/protocols/features/ProteinSilentReportTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RRReporterTests Test suite: RRReporterTests (test/protocols/rotamer_recovery/RRReporter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeptideStubMoverTests Test suite: PeptideStubMoverTests (test/protocols/cyclic_peptide/PeptideStubMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamachandranEnergy_SymGlyTests Test suite: RamachandranEnergy_SymGlyTests (test/core/scoring/methods/RamachandranEnergy_symmgly.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RNA_DeNovoProtocolTest Test suite: RNA_DeNovoProtocolTest (test/protocols/rna/RNA_DeNovoProtocolTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamachandranPowerTest Test suite: RamachandranPowerTest (test/core/scoring/Ramachandran_power.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeConstraintTests Test suite: ResidueTypeConstraintTests (test/core/scoring/constraints/ResidueTypeConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RNA_FA_ElecEnergyTests Test suite: RNA_FA_ElecEnergyTests (test/core/scoring/elec/RNA_FA_ElecEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueSelectorFactoryTests Test suite: ResidueSelectorFactoryTests (test/core/select/residue_selector/ResidueSelectorFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamaPreProTests_symmgly Test suite: RamaPreProTests_symmgly (test/core/scoring/RamaPrePro_symmgly.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RandomResidueSelectorTests Test suite: RandomResidueSelectorTests (test/core/select/residue_selector/RandomResidueSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeSetCacheConcurrencyTests Test suite: ResidueTypeSetCacheConcurrencyTests (test/core/chemical/ResidueTypeSetCacheConcurrencyTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResourceLoaderFactoryTests Test suite: ResourceLoaderFactoryTests (test/basic/resource_manager/ResourceLoaderFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamachandranTest Test suite: RamachandranTest (test/core/scoring/Ramachandran.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamaMutationSelectorTests Test suite: RamaMutationSelectorTests (test/protocols/cyclic_peptide/RamaMutationSelectorTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResourceManagerTests Test suite: ResourceManagerTests (test/basic/resource_manager/ResourceManager.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseResidueTypeSetTests Test suite: PoseResidueTypeSetTests (test/core/chemical/PoseResidueTypeSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinInterfaceDesignOperationTests Test suite: ProteinInterfaceDesignOperationTests (test/protocols/task_operations/ProteinInterfaceDesignOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NPDHBondEnergyTests Test suite: NPDHBondEnergyTests (test/core/scoring/hbonds/NPDHBondEnergy.cxxtest.hh) *** './core.test NPDHBondEnergyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33230 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test NPDHBondEnergyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RelativeConnectRightTests Test suite: RelativeConnectRightTests (test/protocols/forge/build/RelativeConnectRight.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamaPreProEnergyTests Test suite: RamaPreProEnergyTests (test/core/scoring/methods/RamaPreProEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReplicateFilterTests Test suite: ReplicateFilterTests (test/protocols/filters/ReplicateFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingConformerIOTests Test suite: RingConformerIOTests (test/core/chemical/rings/ring_conformer_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ReferencePoseTests Test suite: ReferencePoseTests (test/core/pose/reference_pose/ReferencePose.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PREMultiSetTests Test suite: PREMultiSetTests (test/core/scoring/nmr/pre/PREMultiSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingConformerSetTests Test suite: RingConformerSetTests (test/core/chemical/rings/RingConformerSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingDetectionTests Test suite: RingDetectionTests (test/utility/graph/ring_detection.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingPlaneFunctionsTests Test suite: RingPlaneFunctionsTests (test/numeric/geometry/ring_plane.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResiduePDBInfoHasLabelSelectorTests Test suite: ResiduePDBInfoHasLabelSelectorTests (test/core/select/residue_selector/ResiduePDBInfoHasLabelSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OopPuckMoverTest Test suite: OopPuckMoverTest (test/protocols/simple_moves/oop/OopPuckMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueCountFilterTests Test suite: ResidueCountFilterTests (test/protocols/simple_filters/ResidueCountFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueIndexSelectorTests Test suite: ResidueIndexSelectorTests (test/core/select/residue_selector/ResidueIndexSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamachandranEnergyTests Test suite: RamachandranEnergyTests (test/core/scoring/methods/RamachandranEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeBloatTests Test suite: ResidueTypeBloatTests (test/core/chemical/ResidueTypeBloatTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueNameSelectorTests Test suite: ResidueNameSelectorTests (test/core/select/residue_selector/ResidueNameSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResfileReaderTests Test suite: ResfileReaderTests (test/core/pack/task/ResfileReader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueGraphTypesTests Test suite: ResidueGraphTypesTests (test/core/chemical/ResidueGraphTypesTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Resfile_Silent Test suite: Resfile_Silent (test/core/pack/task/Resfile_Silent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseToStructFileRepConverterTests Test suite: PoseToStructFileRepConverterTests (test/core/io/pose_to_sfr/PoseToStructFileRepConverter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueInSequenceMotifSelectorTest Test suite: ResidueInSequenceMotifSelectorTest (test/core/select/residue_selector/ResidueInSequenceMotifSelectorTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeConstraintMoverTests Test suite: ResidueTypeConstraintMoverTests (test/protocols/constraint_movers/ResidueTypeConstraintMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RRReporterSQLiteTests Test suite: RRReporterSQLiteTests (test/protocols/rotamer_recovery/RRReporterSQLite.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerConstraintDun2002Tests Test suite: RotamerConstraintDun2002Tests (test/core/pack/dunbrack/RotamerConstraintDun2002.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SVDSolverTest Test suite: SVDSolverTest (test/basic/svd/SVD_Solver.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamaPreProTests Test suite: RamaPreProTests (test/core/scoring/RamaPrePro.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SOGFuncTests Test suite: SOGFuncTests (test/core/scoring/func/SOGFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeFinderTests Test suite: ResidueTypeFinderTests (test/core/chemical/ResidueTypeFinderTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PREDataTests Test suite: PREDataTests (test/core/scoring/nmr/pre/PREData.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: OptimizeMembranePositionMoverTest Test suite: OptimizeMembranePositionMoverTest (test/protocols/membrane/OptimizeMembranePositionMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RestypeToRDMolTests Test suite: RestypeToRDMolTests (test/core/chemical/rdkit/RestypeToRDMol.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: NubInitioMoverTests Test suite: NubInitioMoverTests (test/protocols/fold_from_loops/NubInitioMover.cxxtest.hh) *** './protocols.test NubInitioMoverTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33580 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test NubInitioMoverTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RepackingRefinerTests Test suite: RepackingRefinerTests (test/protocols/loop_modeling/RepackingRefinerTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScalarWeightedFuncTests Test suite: ScalarWeightedFuncTests (test/core/scoring/func/ScalarWeightedFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RandomizeBBByRamaPreProTests Test suite: RandomizeBBByRamaPreProTests (test/protocols/backbone_moves/RandomizeBBByRamaPreProTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RestrictToLoopsTests Test suite: RestrictToLoopsTests (test/protocols/task_operations/RestrictToLoopsTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreFileOutputterTests Test suite: ScoreFileOutputterTests (test/protocols/jd3/pose_outputters/ScoreFileOutputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreFunctionUtilityTest Test suite: ScoreFunctionUtilityTest (test/core/scoring/ScoreFunctionFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSMultiSetTests Test suite: PCSMultiSetTests (test/core/scoring/nmr/pcs/PCSMultiSet.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoringGridLoaderTests Test suite: ScoringGridLoaderTests (test/protocols/qsar/scoring_grid/ScoringGridLoader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoringSchemeTests Test suite: ScoringSchemeTests (test/core/sequence/ScoringSchemes.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RestrictToCDRH3LoopTest Test suite: RestrictToCDRH3LoopTest (test/protocols/task_operations/RestrictToCDRH3Loop.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RestrictNonSurfaceToRepackingOperationTests Test suite: RestrictNonSurfaceToRepackingOperationTests (test/protocols/task_operations/RestrictNonSurfaceToRepackingOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RemodelConstraintGeneratorTest Test suite: RemodelConstraintGeneratorTest (test/protocols/forge/remodel/RemodelConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingClosureEnergyTests Test suite: RingClosureEnergyTests (test/core/scoring/methods/RingClosureEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueProbDesignOperationTests Test suite: ResidueProbDesignOperationTests (test/protocols/task_operations/ResidueProbDesignOperationTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RestrictOperationsTests Test suite: RestrictOperationsTests (test/protocols/task_operations/RestrictOperations.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentPairingTests Test suite: SegmentPairingTests (test/protocols/denovo_design/components/SegmentPairingTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerBuildingFunctionsTests Test suite: RotamerBuildingFunctionsTests (test/core/pack/rotamer_set/rotamer_building_functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RigidChunkTest Test suite: RigidChunkTest (test/protocols/abinitio/abscript/RigidChunkTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ProteinSilentTests Test suite: ProteinSilentTests (test/core/io/silent/protein_silent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeSetTests Test suite: ResidueTypeSetTests (test/core/chemical/ResidueTypeSetTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResfileAutoRemapTest Test suite: ResfileAutoRemapTest (test/protocols/enzdes/ResfileAutoRemap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentTests Test suite: SegmentTests (test/protocols/denovo_design/components/SegmentTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingUtilityFunctionTests Test suite: RingUtilityFunctionTests (test/core/chemical/rings/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RmsdFromResidueSelectorFilterTests Test suite: RmsdFromResidueSelectorFilterTests (test/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceAlignmentTests Test suite: SequenceAlignmentTests (test/core/sequence/SequenceAlignment.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeTests Test suite: ResidueTypeTests (test/core/chemical/ResidueTypeTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceMotifUtilTests Test suite: SequenceMotifUtilTests (test/core/sequence/SequenceMotifUtilTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceProfileConstraintTests Test suite: SequenceProfileConstraintTests (test/core/scoring/constraints/SequenceProfileConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSDataSymmetryTests Test suite: PCSDataSymmetryTests (test/core/scoring/nmr/pcs/PCSData_Symmetry.cxxtest.hh) *** './core.test PCSDataSymmetryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33861 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PCSDataSymmetryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceProfile_Tests Test suite: SequenceProfile_Tests (test/core/sequence/SequenceProfile.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSDataTests Test suite: PCSDataTests (test/core/scoring/nmr/pcs/PCSData.cxxtest.hh) *** './core.test PCSDataTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33869 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PCSDataTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerDotsTests Test suite: RotamerDotsTests (test/core/pack/interaction_graph/RotamerDots.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeLinkingConstraintTests Test suite: ResidueTypeLinkingConstraintTests (test/core/scoring/constraints/ResidueTypeLinkingConstraint.cxxtest.hh) ERROR: Trying to add a bonus value to an existing bonus_map_ key, and overwrite is false. ERROR:: Exit from: src/core/scoring/constraints/ResidueTypeLinkingConstraint.cc line: 136 ERROR: Bonus map must have two-residue keys (e.g. 'AK'), not D ERROR:: Exit from: src/core/scoring/constraints/ResidueTypeLinkingConstraint.cc line: 160 ERROR: Bonus map must have two-residue keys (e.g. 'AK'), not DIY ERROR:: Exit from: src/core/scoring/constraints/ResidueTypeLinkingConstraint.cc line: 160 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RigidLigandBuilderTests Test suite: RigidLigandBuilderTests (test/protocols/match/RigidLigandBuilder.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RingPlaneFlipMoverTests Test suite: RingPlaneFlipMoverTests (test/protocols/carbohydrates/RingPlaneFlipMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotateJumpAxisMoverTests Test suite: RotateJumpAxisMoverTests (test/protocols/rigid/RotateJumpAxisMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceUtilTests Test suite: SequenceUtilTests (test/core/sequence/SequenceUtil.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSSingleSetSymmetryTests Test suite: PCSSingleSetSymmetryTests (test/core/scoring/nmr/pcs/PCSSingleSet_Symmetry.cxxtest.hh) *** './core.test PCSSingleSetSymmetryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33951 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PCSSingleSetSymmetryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PCSSingleSetTests Test suite: PCSSingleSetTests (test/core/scoring/nmr/pcs/PCSSingleSet.cxxtest.hh) *** './core.test PCSSingleSetTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 33957 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PCSSingleSetTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SewingHasherTests Test suite: SewingHasherTests (test/protocols/legacy_sewing/SewingHasherTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SignalHubTests Test suite: SignalHubTests (test/utility/signals/SignalHub.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ShowConstraintsFilterTests Test suite: ShowConstraintsFilterTests (test/protocols/constraint_filters/ShowConstraintsFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SigmoidFuncTests Test suite: SigmoidFuncTests (test/core/scoring/func/SigmoidFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTorsionRestraintsTest Test suite: ResidueTorsionRestraintsTest (test/protocols/ligand_docking/ResidueTorsionRestraints.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScaffoldBuildPointTests Test suite: ScaffoldBuildPointTests (test/protocols/match/ScaffoldBuildPoint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreNormalizationTest Test suite: ScoreNormalizationTest (test/protocols/qsar/scoring_grid/ScoreNormalization.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SilentFilePoseOutputterTests Test suite: SilentFilePoseOutputterTests (test/protocols/jd3/pose_outputters/SilentFilePoseOutputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SasaTests Test suite: SasaTests (test/core/scoring/sasa.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RemoveMetalConnectionsMoverTests Test suite: RemoveMetalConnectionsMoverTests (test/protocols/metal_interface/RemoveMetalConnectionsMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Scs_functor_filtering_tests Test suite: Scs_functor_filtering_tests (test/protocols/antibody/grafting/scs_functor_filtering.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PDB_w_glycans_IO Test suite: PDB_w_glycans_IO (test/core/io/PDB_w_glycans_IO.cxxtest.hh) *** './core.test PDB_w_glycans_IO --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 34138 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PDB_w_glycans_IO --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreTest Test suite: ScoreTest (test/protocols/moves/ScoreTest.cxxtest.hh) Start All Scoring tests More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimulateMPITests Test suite: SimulateMPITests (test/utility/simulate_mpi.cxxtest.hh) Attempting to use an MPI routine before initializing MPICH More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SecondaryStructureSelectorTests Test suite: SecondaryStructureSelectorTests (test/core/select/residue_selector/SecondaryStructureSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SecondaryStructureFilterTests Test suite: SecondaryStructureFilterTests (test/protocols/fldsgn/filters/SecondaryStructureFilterTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentInsertTests Test suite: SegmentInsertTests (test/protocols/forge/build/SegmentInsert.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentSwapTests Test suite: SegmentSwapTests (test/protocols/forge/build/SegmentSwap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceMetricTests Test suite: SequenceMetricTests (test/core/simple_metrics/metrics/SequenceMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerTrials Test suite: RotamerTrials (test/core/pack/RotamerTrials.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerSubsetsTest Test suite: RotamerSubsetsTest (test/core/pack/rotamer_set/RotamerSubsets.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTypeConstraintGeneratorTests Test suite: ResidueTypeConstraintGeneratorTests (test/protocols/constraint_generator/ResidueTypeConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentSequenceProfileTests Test suite: SegmentSequenceProfileTests (test/protocols/indexed_structure_store/SegmentSequenceProfile.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentedAtomPairConstraintGeneratorTests Test suite: SegmentedAtomPairConstraintGeneratorTests (test/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SCMinMinimizerMapTests Test suite: SCMinMinimizerMapTests (test/core/pack/scmin/SCMinMinimizerMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SegmentRebuildTests Test suite: SegmentRebuildTests (test/protocols/forge/build/SegmentRebuild.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PseudocontactShiftTests Test suite: PseudocontactShiftTests (test/protocols/abinitio/PseudocontactShiftEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreFunctionFactoryTest More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmallKeyMapTests Test suite: ScoreFunctionFactoryTest (test/core/scoring/ScoreFunctionFactory.cxxtest.hh) Test suite: SmallKeyMapTests (test/utility/keys/SmallKeyMap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SelectorLogicParserTests Test suite: SelectorLogicParserTests (test/core/select/residue_selector/SelectorLogicParser.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreFunctionTest Test suite: ScoreFunctionTest (test/core/scoring/ScoreFunction.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SCMinMultifuncTests Test suite: SCMinMultifuncTests (test/core/pack/scmin/SCMinMultifunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmallKeyVectorTests Test suite: SmallKeyVectorTests (test/utility/keys/SmallKeyVector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeptideDeriverFilterTests Test suite: PeptideDeriverFilterTests (test/protocols/peptide_deriver/PeptideDeriverFilterTests.cxxtest.hh) *** './protocols.test PeptideDeriverFilterTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 34318 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test PeptideDeriverFilterTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SkipViolFuncTests Test suite: SkipViolFuncTests (test/core/scoring/func/SkipViolFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmallVector1_Tests Test suite: SmallVector1_Tests (test/utility/small_vector1.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PeptoidDesignTests Test suite: PeptoidDesignTests (test/core/pack/PeptoidDesignTests.cxxtest.hh) *** './core.test PeptoidDesignTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 34335 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PeptoidDesignTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SortFunctionsTest Test suite: SortFunctionsTest (test/utility/sort.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SelectedResidueCountMetricTests Test suite: SelectedResidueCountMetricTests (test/core/simple_metrics/metrics/SelectedResidueCountMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SphericalVectorTests Test suite: SphericalVectorTests (test/numeric/sphericalVector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SoedingFuncTests Test suite: SoedingFuncTests (test/core/scoring/func/SoedingFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SpanTest Test suite: SpanTest (test/core/conformation/membrane/Span.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceSimilarityMetricTests Test suite: SequenceSimilarityMetricTests (test/core/simple_metrics/metrics/SequenceSimilarityMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerBoltzmannWeight2Tests Test suite: RotamerBoltzmannWeight2Tests (test/protocols/simple_filters/RotamerBoltzmannWeight2.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PlainSilentFileJobDistributorTest Test suite: PlainSilentFileJobDistributorTest (test/protocols/jobdist/PlainSilentFileJobDistributor.cxxtest.hh) *** './protocols.test PlainSilentFileJobDistributorTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 34376 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test PlainSilentFileJobDistributorTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SplineFuncTests Test suite: SplineFuncTests (test/core/scoring/func/SplineFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceRecoveryMetricTests Test suite: SequenceRecoveryMetricTests (test/protocols/analysis/simple_metrics/SequenceRecoveryMetricTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SquareWell2FuncTests Test suite: SquareWell2FuncTests (test/core/scoring/func/SquareWell2Func.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SquareWellFuncTests Test suite: SquareWellFuncTests (test/core/scoring/func/SquareWellFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SandwichFeaturesTests Test suite: SandwichFeaturesTests (test/protocols/features/SandwichFeaturesTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SheetConstraintGeneratorTests Test suite: SheetConstraintGeneratorTests (test/protocols/fldsgn/SheetConstraintGenerator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StatisticsFunctionsTests Test suite: StatisticsFunctionsTests (test/numeric/statistics.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SilentFilePoseInputterTests Test suite: SilentFilePoseInputterTests (test/protocols/jd3/pose_inputters/SilentFilePoseInputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SetSecStructEnergiesMoverTests Test suite: SetSecStructEnergiesMoverTests (test/protocols/fldsgn/potentials/SetSecStructEnergiesMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SiteConstraintTests Test suite: SiteConstraintTests (test/core/scoring/constraints/SiteConstraint.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SheetTopologyFilterTest Test suite: SheetTopologyFilterTest (test/protocols/fldsgn/filters/SheetTopologyFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleLigandRotamerLibraryTests Test suite: SingleLigandRotamerLibraryTests (test/core/pack/rotamers/SingleLigandRotamerLibrary.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StandardJobQueenOverrideInputterTests Test suite: StandardJobQueenOverrideInputterTests (test/protocols/jd3/StandardJobQueenOverrideInputter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StringResourceStreamTests Test suite: StringResourceStreamTests (test/basic/resource_manager/locator/StringResourceStream.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RmsUtilTest Test suite: RmsUtilTest (test/core/scoring/rms_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StringUtilTests Test suite: StringUtilTests (test/utility/string_util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StandardJobQueenTests Test suite: StandardJobQueenTests (test/protocols/jd3/StandardJobQueen.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructFileReaderOptionsTests Test suite: StructFileReaderOptionsTests (test/core/io/StructFileReaderOptions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructFileRepOptionsTests Test suite: StructFileRepOptionsTests (test/core/io/StructFileRepOptions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleResidueRotamerLibraryTests Test suite: SingleResidueRotamerLibraryTests (test/core/pack/rotamers/SingleResidueRotamerLibrary.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: PoseUtilTests Test suite: PoseUtilTests (test/core/pose/util.cxxtest.hh) *** './core.test PoseUtilTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 34687 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test PoseUtilTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SliceResidueSelectorTests Test suite: SliceResidueSelectorTests (test/core/select/residue_selector/SliceResidueSelector.cxxtest.hh) ERROR: wrapped index has gone below 1! Set=-3 wrapped=0 from set greater than to! from=1 to=0 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: from set greater than to! from=2 to=1 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: index has exceeded selection range! Set=3 range_size=2 index has exceeded selection range! Set=3 range_size=2 from set greater than to! from=3 to=2 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: wrapped index has gone below 1! Set=-3 wrapped=0 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: index has exceeded selection range! Set=3 range_size=2 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: index has exceeded selection range! Set=5 range_size=4 index has exceeded selection range! Set=5 range_size=4 from set greater than to! from=5 to=4 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 ERROR: index has exceeded selection range! Set=5 range_size=4 index has exceeded selection range! Set=5 range_size=4 from set greater than to! from=5 to=4 set "-out:levels core.select.residue_selector.SliceResidueSelector:400" to debug! ERROR:: Exit from: src/core/select/residue_selector/SliceResidueSelector.cc line: 184 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SplitUnfoldedReferenceEnergyTests Test suite: SplitUnfoldedReferenceEnergyTests (test/core/scoring/methods/SplitUnfoldedTwoBodyEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SplitUnfoldedTwoBodyPotentialTests Test suite: SplitUnfoldedTwoBodyPotentialTests (test/core/scoring/SplitUnfoldedTwoBodyPotential.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmallMoverTests Test suite: SmallMoverTests (test/protocols/simple_moves/SmallMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SumFuncTests Test suite: SumFuncTests (test/core/scoring/func/SumFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SurfaceVectorLoaderTest Test suite: SurfaceVectorLoaderTest (test/protocols/surface_docking/SurfaceVectorLoader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SiteGridTests Test suite: SiteGridTests (test/protocols/qsar/scoring_grid/SiteGrid.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StandardJobQueenOverrideOutputterTests Test suite: StandardJobQueenOverrideOutputterTests (test/protocols/jd3/StandardJobQueenOverrideOutputter.cxxtest.hh) Returning dummy! Returning dummy! Returning dummy! Returning dummy! Returning dummy! Returning dummy! More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StoredRotamerLibrarySpecificationTests Test suite: StoredRotamerLibrarySpecificationTests (test/core/pack/rotamers/StoredRotamerLibrarySpecification.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SetMembranePositionTest Test suite: SetMembranePositionTest (test/protocols/membrane/SetMembranePositionMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleInteractionGraphTests Test suite: SimpleInteractionGraphTests (test/core/pack/interaction_graph/SimpleInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StochasticFilterTests Test suite: StochasticFilterTests (test/protocols/filters/BasicFilters.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StoredResidueSubsetSelectorTests Test suite: StoredResidueSubsetSelectorTests (test/protocols/residue_selectors/StoredResidueSubsetSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceMappingTests Test suite: SequenceMappingTests (test/core/id/SequenceMapping.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests_equivalency_voronoi Test suite: SingleNCAARotamerLibraryTests_equivalency_voronoi (test/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_voronoi.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StepWiseMoveSelectorTest Test suite: StepWiseMoveSelectorTest (test/protocols/stepwise/monte_carlo/mover/StepWiseMoveSelectorTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SetupDockingFoldTree Test suite: SetupDockingFoldTree (test/protocols/docking/SetupDockingFoldTree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RNA_DeNovoOptimizerTest Test suite: RNA_DeNovoOptimizerTest (test/protocols/rna/RNA_DeNovoOptimizerTest.cxxtest.hh) *** './protocols.test RNA_DeNovoOptimizerTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 35126 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test RNA_DeNovoOptimizerTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructureDataTests Test suite: StructureDataTests (test/protocols/denovo_design/components/StructureDataTests.cxxtest.hh) ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 ERROR: Unhandled Exception caught by cxxtest: File: src/core/chemical/residue_io.cc:144 [ ERROR ] UtilityExitException ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' Command line: ./protocols.test StructureDataTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig protocols.test: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols/protocols.cxxtest.cpp:43: int main(int, char**): Assertion `false' failed. [node8102:mpi_rank_0][error_sighandler] Caught error: Aborted (signal 6) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructureDataObserverTests Test suite: StructureDataObserverTests (test/protocols/denovo_design/components/StructureDataObserverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StepWiseMinimizerTest Test suite: StepWiseMinimizerTest (test/protocols/stepwise/modeler/StepWiseMinimizerTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ShearMoverTest Test suite: ShearMoverTest (test/protocols/moves/ShearMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructureDataFactoryTests Test suite: StructureDataFactoryTests (test/protocols/denovo_design/components/StructureDataFactoryTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDataLoaderTests Test suite: SymmDataLoaderTests (test/core/conformation/symmetry/SymmDataLoader.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructureStoreTests Test suite: StructureStoreTests (test/protocols/indexed_structure_store/StructureStore.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScoreTest Test suite: ScoreTest (test/core/scoring/ScoreTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RamaPreProTests_oligourea Test suite: RamaPreProTests_oligourea (test/core/scoring/RamaPrePro_oligourea.cxxtest.hh) *** './core.test RamaPreProTests_oligourea --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 35259 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test RamaPreProTests_oligourea --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StructFileRepTests Test suite: StructFileRepTests (test/core/io/StructFileRep.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SugarBackboneEnergyTests Test suite: SugarBackboneEnergyTests (test/core/scoring/methods/SugarBackboneEnergy.cxxtest.hh) Residue 1 is ->3)-beta-D-Manp:reducing_end:->4)-branch:->6)-branch Residue 2 is ->4)-alpha-D-Manp:non-reducing_end Residue 3 is ->4)-beta-D-Glcp:non-reducing_end:2-AcNH Residue 4 is ->4)-alpha-D-Manp:non-reducing_end More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleThreadingMoverTests Test suite: SimpleThreadingMoverTests (test/protocols/simple_moves/SimpleThreadingMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StepWiseMonteCarloTest Test suite: StepWiseMonteCarloTest (test/protocols/stepwise/monte_carlo/StepWiseMonteCarloTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleCycpepPredictApplication_betanov15_Tests Test suite: SimpleCycpepPredictApplication_betanov15_Tests (test/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleCycpepPredictApplicationTests Test suite: SimpleCycpepPredictApplicationTests (test/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmallMoverTest Test suite: SmallMoverTest (test/protocols/moves/SmallMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleCycpepPredictApplication_design_Tests Test suite: SimpleCycpepPredictApplication_design_Tests (test/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_design.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests_oligourea Test suite: SingleNCAARotamerLibraryTests_oligourea (test/core/pack/rotamers/SingleNCAARotamerLibraryTests_oligourea.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleCycpepPredictApplication_design_betanov15_Tests Test suite: SimpleCycpepPredictApplication_design_betanov15_Tests (test/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication_design_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StandardPoseJobSummaryTests Test suite: StandardPoseJobSummaryTests (test/protocols/jd3/job_summaries/StandardPoseJobSummaryTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SmartAssemblyTests Test suite: SmartAssemblyTests (test/protocols/sewing/data_storage/SmartAssemblyTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TCRmodelSeqParserTests Test suite: TCRmodelSeqParserTests (test/protocols/tcr/TCRmodelSeqParserTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TagTests Test suite: TagTests (test/utility/tag/Tag.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: MembraneUtil Test suite: MembraneUtil (test/protocols/membrane/MembraneUtil.cxxtest.hh) *** './protocols.test MembraneUtil --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 32796 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./protocols.test MembraneUtil --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SurfaceInteractionGraphTests Test suite: SurfaceInteractionGraphTests (test/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RosettaScriptsParserTests Test suite: RosettaScriptsParserTests (test/protocols/rosetta_scripts/RosettaScriptsParser.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StepWisePoseAlignerTest Test suite: StepWisePoseAlignerTest (test/protocols/stepwise/modeler/align/StepWisePoseAlignerTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TaskUtilTests Test suite: TaskUtilTests (test/core/pack/task/TaskUtilTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RosettaScriptsJobQueenTests Test suite: RosettaScriptsJobQueenTests (test/protocols/rosetta_scripts/RosettaScriptsJobQueen.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SpartaTest Test suite: SpartaTest (test/protocols/sparta/Sparta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResiduePropertySelectorTests Test suite: ResiduePropertySelectorTests (test/core/select/residue_selector/ResiduePropertySelectorTests.cxxtest.hh) *** './core.test ResiduePropertySelectorTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 35722 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test ResiduePropertySelectorTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SnugDockProtocol_setup_ab_ag_foldtree_tests Test suite: SnugDockProtocol_setup_ab_ag_foldtree_tests (test/protocols/antibody/snugdock/SnugDockProtocol_setup_ab_ag_foldtree.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RigidBodyMoverTests Test suite: RigidBodyMoverTests (test/protocols/rigid/RigidBodyMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ResidueTest Test suite: ResidueTest (test/core/conformation/Residue.cxxtest.hh) *** './core.test ResidueTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 35753 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test ResidueTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SurfacePotentialTests Test suite: SurfacePotentialTests (test/core/scoring/SurfacePotential.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TokenHubTests Test suite: TokenHubTests (test/utility/signals/TokenHub.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleMetricSelectorTests Test suite: SimpleMetricSelectorTests (test/core/select/residue_selector/SimpleMetricSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TopOutFuncTests Test suite: TopOutFuncTests (test/core/scoring/func/TopOutFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TorsionBinIOTests Test suite: TorsionBinIOTests (test/protocols/frag_picker/TorsionBinIO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests_Dun02_no_voronoi Test suite: SingleNCAARotamerLibraryTests_Dun02_no_voronoi (test/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02_no_voronoi.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests_equivalency_no_voronoi Test suite: SingleNCAARotamerLibraryTests_equivalency_no_voronoi (test/core/pack/rotamers/SingleNCAARotamerLibraryTests_equivalency_no_voronoi.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricConformationTests Test suite: SymmetricConformationTests (test/core/conformation/symmetry/SymmetricConformation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetryUtilTests Test suite: SymmetryUtilTests (test/core/pose/symmetry/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TaskOperationFactoryTests Test suite: TaskOperationFactoryTests (test/core/pack/task/operation/TaskOperationFactory.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TricubicSplineTests Test suite: TricubicSplineTests (test/numeric/interpolation/spline/TricubicSpline.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmMinimalistInteractionGraphTests Test suite: SymmMinimalistInteractionGraphTests (test/core/pack/interaction_graph/SymmMinimalistInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TwoDHistogramTests Test suite: TwoDHistogramTests (test/numeric/histograms/TwoDHistogram.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UToolsTests Test suite: UToolsTests (test/utility/UTools.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SetupMetalsMoverTests Test suite: SetupMetalsMoverTests (test/protocols/simple_moves/SetupMetalsMoverTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricAddMembraneMoverTest Test suite: SymmetricAddMembraneMoverTest (test/protocols/membrane/symmetry/SymmetricAddMembraneMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UTracerTests Test suite: UTracerTests (test/utility/UTracer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: USOGFuncTests Test suite: USOGFuncTests (test/core/scoring/func/USOGFunc.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricCycpepAlignTests Test suite: SymmetricCycpepAlignTests (test/protocols/cyclic_peptide/SymmetricCycpepAlignTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TestCyclicCoordinateDescentMath Test suite: TestCyclicCoordinateDescentMath (test/core/numeric_tests_that_are_easier_to_write_if_you_can_use_a_pose/cyclic_coordinate_descent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TestAsymmetricUnitSelector Test suite: TestAsymmetricUnitSelector (test/core/select/residue_selector/TestAsymmetricUnitSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UserKeyTests Test suite: UserKeyTests (test/utility/keys/UserKey.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests_Dun02 Test suite: SingleNCAARotamerLibraryTests_Dun02 (test/core/pack/rotamers/SingleNCAARotamerLibraryTests_Dun02.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricRotamerTrials Test suite: SymmetricRotamerTrials (test/core/pack/SymmetricRotamerTrials.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UtilityNumbersTests Test suite: UtilityNumbersTests (test/utility/numbers.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TaskSelectorTests Test suite: TaskSelectorTests (test/protocols/residue_selectors/TaskSelector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerRecoveryTests Test suite: RotamerRecoveryTests (test/protocols/rotamer_recovery/RotamerRecovery.cxxtest.hh) *** './protocols.test RotamerRecoveryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36204 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test RotamerRecoveryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Symmetric_Binary_Protein_Silent_File_Tests Test suite: Symmetric_Binary_Protein_Silent_File_Tests (test/core/io/silent/symmetric_binary_protein_silent.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerUtils Test suite: RotamerUtils (test/core/pack/util.cxxtest.hh) *** './core.test RotamerUtils --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36261 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test RotamerUtils --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UseBicubicInterpolationTest Test suite: UseBicubicInterpolationTest (test/core/scoring/use_bicubic_interpolation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VallTests Test suite: VallTests (test/core/fragment/picking/vall/vall.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Vector0Tests Test suite: Vector0Tests (test/utility/vector0.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TaskOperationsTests Test suite: TaskOperationsTests (test/core/pack/task/operation/TaskOperations.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Vector1BoolTests Test suite: Vector1BoolTests (test/utility/vector1_bool.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Vector1FunctionsTests Test suite: Vector1FunctionsTests (test/utility/vector1.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: Vector1_Tests Test suite: Vector1_Tests (test/utility/vector1.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VectorLTests Test suite: VectorLTests (test/utility/vectorL.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UtilTest Test suite: UtilTest (test/core/fragment/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMinTests Test suite: SymmDLMinTests (test/core/scoring/SymmDLMin.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SapConstraintEnergyTests Test suite: SapConstraintEnergyTests (test/core/pack/guidance_scoreterms/sap/SapConstraintEnergy.cxxtest.hh) *** './core.test SapConstraintEnergyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36362 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SapConstraintEnergyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ScTests Test suite: ScTests (test/core/scoring/sc.cxxtest.hh) *** './core.test ScTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36371 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test ScTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TautomerizeAnomerMoverTests Test suite: TautomerizeAnomerMoverTests (test/protocols/carbohydrates/TautomerizeAnomerMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TableVsAnalyticEtableTests Test suite: TableVsAnalyticEtableTests (test/core/scoring/etable/TableVsAnalyticEtable.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoxelArrayTest Test suite: VoxelArrayTest (test/numeric/VoxelArray.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_NCAATests Test suite: SymmDLMin_NCAATests (test/core/scoring/SymmDLMin_NCAA.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoxelGridTests Test suite: VoxelGridTests (test/numeric/VoxelGrid.cxxtest.hh) Trace: Creating 3D VoxelGrid with 8000 members. Trace: Retrieve neighbors of point (0.5, 0.5, 0.5) within 1.0 neighborhood radius. Trace: Retrieve neighbors of point (4.5, 4.5, 4.5) within 1.0 neighborhood radius. Trace: Retrieve neighbors of point (4.5, 0.5, 0.5) within 1.0 neighborhood radius. Trace: Retrieve neighbors between two voxel grids within 1.0 neighborhood radius. Trace: Retrieve all neighbors of this grid within 0.30 neighborhood radius. Trace: Retrieve all neighbors of this grid within 0.20 neighborhood radius. Trace: Creating 1D VoxelGrid with 84 members. Trace: Retrieve neighbors of point (1.5, 1.5, 1.5) within 1.0 neighborhood radius. Trace: Retrieve neighbors between two voxel grids within 0.2 neighborhood radius. Trace: Retrieve all neighbors of this grid within 0.30 neighborhood radius. Trace: Retrieve all neighbors of this grid within 0.18 neighborhood radius. More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLTests Test suite: SymmDLTests (test/core/scoring/SymmDL.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TorsionSamplingKinematicPerturberTests Test suite: TorsionSamplingKinematicPerturberTests (test/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UnfoldedStateEnergyTests Test suite: UnfoldedStateEnergyTests (test/core/scoring/methods/UnfoldedStateEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UnfoldedStatePotentialTests Test suite: UnfoldedStatePotentialTests (test/core/scoring/UnfoldedStatePotential.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: WeightedReservoirSamplerTest Test suite: WeightedReservoirSamplerTest (test/numeric/random/WeightedReservoirSampler.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TestCCDLoopClosureMover Test suite: TestCCDLoopClosureMover (test/protocols/loops/closers/CCDLoopClosureMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: WeightedSamplerTests Test suite: WeightedSamplerTests (test/numeric/random/WeightedSampler.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoxelSetIteratorTests Test suite: VoxelSetIteratorTests (test/protocols/match/VoxelSetIterator.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDL_NCAATests Test suite: SymmDL_NCAATests (test/core/scoring/SymmDL_NCAA.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TaskAwareMinMoverTests Test suite: TaskAwareMinMoverTests (test/protocols/moves/TaskAwareMinMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: WrapAnglesTest Test suite: WrapAnglesTest (test/numeric/WrapAngles.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XMLSchemaGenerationTests Test suite: XMLSchemaGenerationTests (test/utility/tag/XMLSchemaGeneration.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XMLSchemaValidationTests Test suite: XMLSchemaValidationTests (test/utility/tag/validate_w_xsd.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XYZFunctionsTests Test suite: XYZFunctionsTests (test/numeric/xyz.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XYZMatrixTests Test suite: XYZMatrixTests (test/numeric/xyzMatrix.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XYZTransformTests Test suite: XYZTransformTests (test/numeric/xyzTransform.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XYZTripleTests Test suite: XYZTripleTests (test/numeric/xyzTriple.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XYZVectorTests Test suite: XYZVectorTests (test/numeric/xyzVector.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ZipStreamTests Test suite: ZipStreamTests (test/utility/io/zipstream.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: agglomerative_hierarchical_clusteringTest Test suite: agglomerative_hierarchical_clusteringTest (test/numeric/agglomerative_hierarchical_clustering.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_nmethyl_Tests Test suite: SymmDLMin_nmethyl_Tests (test/core/scoring/SymmDLMin_nmethyl.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: bicubic_interpolation_function_tests Test suite: bicubic_interpolation_function_tests (test/numeric/interpolation/spline/bicubic_interpolation_function.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TypesetMoversTests Test suite: TypesetMoversTests (test/protocols/moves/TypesetMovers.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UniformRigidBody Test suite: UniformRigidBody (test/protocols/rigid/UniformRigidBody.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricScoreTest Test suite: SymmetricScoreTest (test/core/scoring/symmetry/SymmetricScoreTest.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmLinMemInteractionGraphTests Test suite: SymmLinMemInteractionGraphTests (test/core/pack/interaction_graph/SymmLinMemInteractionGraph.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: fold_tree_functions_Tests Test suite: fold_tree_functions_Tests (test/protocols/forge/methods/fold_tree_functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDL_nmethyl_Tests Test suite: SymmDL_nmethyl_Tests (test/core/scoring/SymmDL_nmethyl.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SpanningTopologyTest Test suite: SpanningTopologyTest (test/core/conformation/membrane/SpanningTopology.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: heapTests Test suite: heapTests (test/utility/heap.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: in_place_listTests Test suite: in_place_listTests (test/utility/in_place_list.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TotalSasaFilterTests Test suite: TotalSasaFilterTests (test/protocols/simple_filters/TotalSasaFilter.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: integer_mappingTests Test suite: integer_mappingTests (test/utility/integer_mapping.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: make_shared_Tests Test suite: make_shared_Tests (test/utility/pointer/make_shared.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VDW_EnergyTests Test suite: VDW_EnergyTests (test/core/scoring/vdwaals/VDW_Energy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: json_utilitiesTests Test suite: json_utilitiesTests (test/utility/json/json_utilitiesTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SwitchChainOrderMoverTests Test suite: SwitchChainOrderMoverTests (test/protocols/simple_moves/SwitchChainOrderMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: minimum_bounding_ellipse Test suite: minimum_bounding_ellipse (test/numeric/linear_algebra/minimum_bounding_ellipse.cxxtest.hh) Trace: Test correct ellipse generation Trace: Test point in ellipse More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: min_pack_Tests Test suite: min_pack_Tests (test/core/pack/min_pack.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmetricMinimizerTests Test suite: SymmetricMinimizerTests (test/core/optimization/symmetry/SymmetricMinimizer.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_NCAA_betaTests Test suite: SymmDLMin_NCAA_betaTests (test/core/scoring/SymmDLMin_NCAA_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: mmtf_util Test suite: mmtf_util (test/core/io/mmtf/util.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TranslationRotationMoverTest Test suite: TranslationRotationMoverTest (test/protocols/membrane/TranslationRotationMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDL_NCAA_betaTests Test suite: SymmDL_NCAA_betaTests (test/core/scoring/SymmDL_NCAA_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VarSolDRotamerDotsTest Test suite: VarSolDRotamerDotsTest (test/protocols/vardist_solaccess/VarSolDRotamerDots.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_beta_Tests Test suite: SymmDLMin_beta_Tests (test/core/scoring/SymmDLMin_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: random_functionsTests Test suite: random_functionsTests (test/numeric/random/random.functions.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: random_xyzTests Test suite: random_xyzTests (test/numeric/random/random_xyz.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: polycubic_catmull_rom_Tests Test suite: polycubic_catmull_rom_Tests (test/numeric/interpolation/polycubic_catmull_rom.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ThreeLetterCodeAmbiguityTests Test suite: ThreeLetterCodeAmbiguityTests (test/core/import_pose/3-letter_code_ambiguity_resolution.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TCRmodelGraftingTests Test suite: TCRmodelGraftingTests (test/protocols/tcr/TCRmodelGraftingTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VicinitySamplingKinematicPerturberTests Test suite: VicinitySamplingKinematicPerturberTests (test/protocols/moves/kinematic_closure/VicinitySamplingKinematicPerturber.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDL_beta_Tests Test suite: SymmDL_beta_Tests (test/core/scoring/SymmDL_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: type_traits_Tests Test suite: type_traits_Tests (test/utility/type_traits.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: single_mol_loading_Tests Test suite: single_mol_loading_Tests (test/core/chemical/sdf/single_mol_loading.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoidsPenaltyVoxelGridTests Test suite: VoidsPenaltyVoxelGridTests (test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: atomtype_support_Tests Test suite: atomtype_support_Tests (test/core/chemical/atomtype_support.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: bond_support_Tests Test suite: bond_support_Tests (test/core/chemical/bond_support.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleMetricProtocolsTests Test suite: SimpleMetricProtocolsTests (test/protocols/analysis/simple_metrics/SimpleMetricProtocolsTests.cxxtest.hh) *** './protocols.test SimpleMetricProtocolsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36983 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test SimpleMetricProtocolsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ThreadingMover_Tests Test suite: ThreadingMover_Tests (test/protocols/comparative_modeling/ThreadingMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SimpleMetricTests Test suite: SimpleMetricTests (test/core/simple_metrics/SimpleMetricTests.cxxtest.hh) *** './core.test SimpleMetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36993 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SimpleMetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_nmethyl_beta_Tests Test suite: SymmDLMin_nmethyl_beta_Tests (test/core/scoring/SymmDLMin_nmethyl_beta.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: YHHPlanarityEnergyTests Test suite: YHHPlanarityEnergyTests (test/core/scoring/methods/YHHPlanarityEnergy.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: bridgeObjectsTests Test suite: bridgeObjectsTests (test/numeric/kinematic_closure/bridgeObjects.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SingleNCAARotamerLibraryTests Test suite: SingleNCAARotamerLibraryTests (test/core/pack/rotamers/SingleNCAARotamerLibraryTests.cxxtest.hh) *** './core.test SingleNCAARotamerLibraryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 37037 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SingleNCAARotamerLibraryTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: lipid_PDBs_IO Test suite: lipid_PDBs_IO (test/core/io/PDB_w_lipids_IO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: UltraLightResidueTests Test suite: UltraLightResidueTests (test/core/conformation/UltraLightResidue.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ValidateDun02BinariesTests Test suite: ValidateDun02BinariesTests (test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoidsPenaltyVoxelGridTests_rotamer_setup Test suite: VoidsPenaltyVoxelGridTests_rotamer_setup (test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ValidateDun02CorrectBinariesTests Test suite: ValidateDun02CorrectBinariesTests (test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SpinAroundPartnerMoverTest Test suite: SpinAroundPartnerMoverTest (test/protocols/membrane/SpinAroundPartnerMover.cxxtest.hh) *** './protocols.test SpinAroundPartnerMoverTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 37273 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test SpinAroundPartnerMoverTest --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TransformTests Test suite: TransformTests (test/protocols/ligand_docking/Transform.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: residue_io_Tests Test suite: residue_io_Tests (test/core/chemical/residue_io.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: glycan_PDBs_IO Test suite: glycan_PDBs_IO (test/core/io/PDB_w_glycans_IO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: StartFromTests Test suite: StartFromTests (test/protocols/ligand_docking/StartFrom.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VirtualResidueScoreTest Test suite: VirtualResidueScoreTest (test/core/scoring/VirtualResidues.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: pHVariantTaskOperationTest Test suite: pHVariantTaskOperationTest (test/protocols/task_operations/pHVariantTaskOperation.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: conformation_stored_restypes_tests Test suite: conformation_stored_restypes_tests (test/core/conformation/conformation_stored_restypes.cxxtest.hh) ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 ERROR: Unhandled Exception caught by cxxtest: File: src/core/chemical/residue_io.cc:144 [ ERROR ] UtilityExitException ERROR: Cannot find file 'devel/denovo_design/D2I.params or /scratch/a1376a01/rosetta/main/database/chemical/residue_type_sets/fa_standard/residue_types/devel/denovo_design/D2I.params' Command line: ./core.test conformation_stored_restypes_tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig core.test: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/core/core.cxxtest.cpp:43: int main(int, char**): Assertion `false' failed. [node8102:mpi_rank_0][error_sighandler] Caught error: Aborted (signal 6) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: packer_palette_compatibility_global_tests Test suite: packer_palette_compatibility_global_tests (test/protocols/ligand_docking/packer_palette_compatibility.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: metalloprotein_import Test suite: metalloprotein_import (test/core/util/metalloprotein_import.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: residue_support_Tests Test suite: residue_support_Tests (test/core/chemical/residue_support.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: geometric_rename_Tests Test suite: geometric_rename_Tests (test/core/io/pose_from_sfr/chirality_resolution.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoidsPenaltyEnergyTests Test suite: VoidsPenaltyEnergyTests (test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: WobbleMoverTest Test suite: WobbleMoverTest (test/protocols/abinitio/WobbleMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoidsPenaltyEnergyTests_symm Test suite: VoidsPenaltyEnergyTests_symm (test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergyTests_symm.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TransformIntoMembraneMoverTest Test suite: TransformIntoMembraneMoverTest (test/protocols/membrane/TransformIntoMembraneMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: VoidsPenaltyVoxelGridTests_rotamer_setup_2 Test suite: VoidsPenaltyVoxelGridTests_rotamer_setup_2 (test/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyVoxelGridTests_rotamer_setup_2.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: packer_palette_compatibility_tests Test suite: packer_palette_compatibility_tests (test/protocols/ligand_docking/packer_palette_compatibility.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: stepwise_modeler_rna_util_test Test suite: stepwise_modeler_rna_util_test (test/protocols/stepwise/modeler/rna/stepwise_modeler_rna_util_test.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ddG Test suite: ddG (test/protocols/simple_moves/ddG.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: orphan_restypes_tests Test suite: orphan_restypes_tests (test/protocols/drug_design/orphan_restypes.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: cout_io Test suite: cout_io (test/protocols/util/cout.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: hybridization_TMalign_Tests Test suite: hybridization_TMalign_Tests (test/protocols/hybridization/TMalign.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmGlyMinTests Test suite: SymmGlyMinTests (test/core/scoring/SymmGlyMin.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_peptoid_Tests Test suite: SymmDLMin_peptoid_Tests (test/core/scoring/SymmDLMin_peptoid.cxxtest.hh) *** './core.test SymmDLMin_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38050 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SymmDLMin_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: rtmin_setup_Tests Test suite: rtmin_setup_Tests (test/core/pack/scmin/rtmin_setup.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDLMin_peptoid_beta_Tests Test suite: SymmDLMin_peptoid_beta_Tests (test/core/scoring/SymmDLMin_peptoid_beta.cxxtest.hh) *** './core.test SymmDLMin_peptoid_beta_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38057 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SymmDLMin_peptoid_beta_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmGlyMin_betanov15_Tests Test suite: SymmGlyMin_betanov15_Tests (test/core/scoring/SymmGlyMin_betanov15.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: component_reading_Tests Test suite: component_reading_Tests (test/core/import_pose/component_reading.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmDL_peptoid_Tests Test suite: SymmDL_peptoid_Tests (test/core/scoring/SymmDL_peptoid.cxxtest.hh) *** './core.test SymmDL_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38138 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SymmDL_peptoid_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmGlyTests Test suite: SymmGlyTests (test/core/scoring/SymmGly.cxxtest.hh) *** './core.test SymmGlyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38260 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SymmGlyTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SymmGly_betanov15_Tests Test suite: SymmGly_betanov15_Tests (test/core/scoring/SymmGly_betanov15.cxxtest.hh) *** './core.test SymmGly_betanov15_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38265 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test SymmGly_betanov15_Tests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: mmcif_IO Test suite: mmcif_IO (test/core/io/mmcif_IO.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TestAutoDetectGlycanConnections Test suite: TestAutoDetectGlycanConnections (test/core/io/carbohydrates/TestAutoDetectGlycanConnections.cxxtest.hh) *** './core.test TestAutoDetectGlycanConnections --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 38618 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test TestAutoDetectGlycanConnections --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: TiltMoverTest Test suite: TiltMoverTest (test/protocols/membrane/TiltMover.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: RotamerSetsTests Test suite: RotamerSetsTests (test/core/pack/rotamer_set/RotamerSet.cxxtest.hh) *** './core.test RotamerSetsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36230 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test RotamerSetsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: WaterMediatedHbondMetricTests Test suite: WaterMediatedHbondMetricTests (test/core/simple_metrics/WaterMediatedHbondMetricTests.cxxtest.hh) *** './core.test WaterMediatedHbondMetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 39346 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test WaterMediatedHbondMetricTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: XmlObjectsTests Test suite: XmlObjectsTests (test/protocols/rosetta_scripts/XmlObjects.cxxtest.hh) *** './protocols.test XmlObjectsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 39448 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./protocols.test XmlObjectsTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: mmtf_IO Test suite: mmtf_IO (test/core/io/mmtf_IO.cxxtest.hh) *** './core.test mmtf_IO --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 39657 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 18 ./core.test mmtf_IO --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: SequenceSymmetricAnnealerTests Test suite: SequenceSymmetricAnnealerTests (test/core/pack/annealer/SequenceSymmetricAnnealer.cxxtest.hh) *** './core.test SequenceSymmetricAnnealerTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 36761 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 36 ./core.test SequenceSymmetricAnnealerTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_beta_peptoid_TwoChainTests Test suite: CyclicGeometry_beta_peptoid_TwoChainTests (test/core/scoring/cyclic_geometry_beta_peptoid_2chain.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: InterfaceFeaturesTests Test suite: InterfaceFeaturesTests (test/protocols/features/InterfaceFeaturesTests.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: CyclicGeometry_peptoid_TwoChainTests Test suite: CyclicGeometry_peptoid_TwoChainTests (test/core/scoring/cyclic_geometry_peptoid_2chain.cxxtest.hh) *** './core.test CyclicGeometry_peptoid_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig' exceeded the timeout and will be killed! /bin/sh: line 1: 29507 Killed /apps/applications/PYTHON/2.7/bin/python /scratch/a1376a01/rosetta/main/source/test/timelimit.py 90 ./core.test CyclicGeometry_peptoid_TwoChainTests --database /scratch/a1376a01/rosetta/main/database -mute all -no_fconfig 1>&2 More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ValidateTalarisBinariesTests Test suite: ValidateTalarisBinariesTests (test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ValidateDefaultBinariesTests Test suite: ValidateDefaultBinariesTests (test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi Running one suite: ValidateBetaBinariesTests Test suite: ValidateBetaBinariesTests (test/core/pack/dunbrack/ValidateDunbrackBinaries.cxxtest.hh) More than one test to run - enabling mute. Identifying platform... Platform found: debug/linux/3.10/64/x86/gcc/8.3/mpi trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.APClusterTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AcceptToBestMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AchiralResidueTypeTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AchiralResidueTypeTests_betanov15.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AchiralResidueTypeTests_betanov16.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddChainBreakTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddConstraintsToCurrentConformationMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddHelixSequenceConstraintsMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddMHCEpitopeConstraintMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddMPLigandMoverTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AddMembraneMoverTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AlignByResidueSelectorMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AlignPDBInfoToSequencesTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AlignPDBInfoToSequencesUtilTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AlignResiduesMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AlignmentEnergyTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyCDRGrafterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyConstraintTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyDatabase.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyDesignOptions.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyInfoTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyResidueSelectorsTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodySeqDesign.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AntibodyTaskOps.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ArithmeticTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AtomCoordinateCstMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AtomPairConstraintGeneratorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.AtomicDistanceFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BackrubMoverTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BackrubProtocolTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BackwardsProtocolsFeaturesReporterCreatorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BackwardsProtocolsFilterCreatorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BasePairConstraintTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BetaAlphaDisulfideTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BetaAlphaDisulfide_betanov15_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BetaAlphaDisulfide_betanov16_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BetaSheetArchitectTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BetaTurnDetectionFeaturesTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BluePrintTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BranchAngleOptimizerTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BridgeChainsMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BridgeTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BuildManagerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.BumpGridTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CalculatorFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ChromophoreDataReaderTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ChunkTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ClaimTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ClassicGridTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ClearConstraintsMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ClusterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CoMTrack.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CompoundArchitectTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConcatenatePosesTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConnectRightTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConnectionArchitectTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConsensusLoopDesignOperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConservativeDesignOperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConstraintGeneratorFactoryTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConstraintScoreCutoffFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ConstraintsManagerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ContactMapTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ContainerMoversTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CoordSerializationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CoordinateConstraintGeneratorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CopyRotamerMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CoupledMovesProtocolTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CreateSequenceMotifOperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CrosslinkerMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CstInfoMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.CycpepSymmetryFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DDGBindOptEDataTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DataLoaderTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DdGScan.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DdgFilter.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DeNovoArchitectTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DeNovoMotifArchitectTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DesignAroundOperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DihedralConstraintGeneratorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DirectSegmentLookupTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DisulfideInsertionMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DisulfidizeMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DivideAndConquerorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DockingTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DsspDesignOperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DsspTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.DynamicAggregateFunctionTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EmbeddingDefTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EmbeddingTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnergyBasedClusteringTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnergyBasedClusteringTests_alpha_aa.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnergyBasedClusteringTests_oligourea.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnergyJobSummaryTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EntityCorrespondenceTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EntityTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnvironmentJump.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnvironmentTorsion.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnzScoreFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.EnzdesTaskOperations_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ExtendChainMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ExtendedPoseBuilderTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ExternalGeomSamplerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ExtraThreadingMover_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FAVirtMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FastRelaxTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FavorSequenceProfileTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FeaturesReporterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FilterFactoryTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FilterReportAsPoseExtraScoresMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FilterValueMetricTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FindConsensusSequenceTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FitnessFilterTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FlipChiralityMover.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FlipMoverTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FoldArchitectMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FoldGraphTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FoldTreeFromMotifTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.ForceDisulfidesMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FragmentCMTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FragmentCandidatesTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FragmentLookupTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.FragmentMoverTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GeneralizedKIC_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GeneralizedKIC_Tests_ramaprepro.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GeneralizedKIC_Tests_ramaprepro_NCAA.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GenerateMainchainPotentialTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GenericSimulatedAnnealerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GlycosyltransferaseMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GraftSwitchMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GraftingTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GreedyOptMutationMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GreenPackerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GrowLeftTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GrowRightTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.GunnCostTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HBNetMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HBPHelixAssignmentsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HBondCalculatorsTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HBondSelectorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HasherTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HelicalBundlePDBInfoTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HelixPairingFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HighResEnsembleTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HotspotHashingTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.HydrogenBondConstraintGeneratorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.IfThenFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InteractionGraphSummaryMetricTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterchainEnvEnergy.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterchainPairEnergy.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceBuilderLoaderTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceDdGMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceFeaturesTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceHbondsFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceHydrophobicResidueContactsFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InterfaceTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.InvrotTreeTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JD3NodeManagersTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JD3PDBPoseInputterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JacobiLoopClosureMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JobGenealogistTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JobOutputterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.Json_based_cdr_detection_tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.JumpingTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LabelPoseFromResidueSelectorMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LigInterfaceConstraintsTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LigandAreaLoaderTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LigandConformerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LigandMetalContactSelectorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LigandScoresUtilTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LimitAromaChi2OperationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LocalBackboneMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LongestContinuousApolarSegmentFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LongestContinuousPolarSegmentFilterTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LoopAnalyzerMoverTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LoopLengthChangeTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/protocols.test.LoopModelerTests.json trying: 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build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.XYZFunctionsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.XYZMatrixTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.XYZTransformTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.XYZTripleTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.XYZVectorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.agglomerative_hierarchical_clusteringTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.bicubic_interpolation_function_tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.bridgeObjectsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.minimum_bounding_ellipse.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/numeric.test.polycubic_catmull_rom_Tests.json trying: 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trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.DisjointSetsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.FactoryTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.FileContentsMapTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.FileNameTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.FileSysUtilTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.GraphTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.IZStreamTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.IterUtilTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Key4TupleTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Key4VectorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.KeyMapTests.json trying: 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build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.RingDetectionTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SignalHubTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SimulateMPITests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SmallKeyMapTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SmallKeyVectorTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SmallVector1_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.SortFunctionsTest.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.StringUtilTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.TagTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.TokenHubTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.UToolsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.UTracerTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.UserKeyTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.UtilityNumbersTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Vector0Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Vector1BoolTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Vector1FunctionsTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.Vector1_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.VectorLTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.XMLSchemaGenerationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.XMLSchemaValidationTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.ZipStreamTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.heapTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.in_place_listTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.integer_mappingTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.json_utilitiesTests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.make_shared_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/utility.test.type_traits_Tests.json trying: build/test/debug/linux/3.10/64/x86/gcc/8.3/mpi/apps.test.LigandDockTest.json -------- Unit test summary -------- Total number of tests: 4405 number tests passed: 3781 number tests failed: 624 failed tests: core.test: SimpleMetricTests:test_composite_real_metric core.test: SymmGly_betanov15_Tests:test_symm_gly_lk_ball_wtd core.test: RotamerSetsTests:test_rotamer_sets core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_elec core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_sol core.test: SymmDL_peptoid_Tests:test_symm_DL_talaris2014 core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_atr core.test: WaterMediatedHbondMetricTests:test_depth_one core.test: PCSSingleSetTests:test_PCSSingleSet_instantiation_and_getters core.test: GlycanTreeSetTests:test_residue_deletions_and_additions core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_beta_sfxn core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_p_aa_pp core.test: ResiduePropertySelectorTests:test_selector core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core.test: ResidueTest:test_Residue_resolve_partial_atom_id_dslf core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_yhh_planarity core.test: SymmDL_peptoid_Tests:test_symm_DL_rama_prepro2 core.test: SimpleMetricTests:test_sasa_metric core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core.test: PoseUtilTests:test_jump_functions core.test: SapConstraintEnergyTests:test_helper_lightning core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_hbonds core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_omega core.test: NPDHBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_dslf_fa13 core.test: PCSDataTests:test_PCSData_instantiation core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core.test: GlycanTreeSetTests:test_glycan_tree_sequence core.test: SymmDL_peptoid_Tests:test_symm_DL_p_aa_pp core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_omega core.test: PoseUtilTests:test_fix_pdbinfo_damaged_by_insertion core.test: WaterMediatedHbondMetricTests:test_sele1_to_sele2 core.test: RotamerSetsTests:test_rotamer_set_residue_type_offsets core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_atr core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core.test: PCSSingleSetTests:test_calc_tensor_and_score_nls core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_hbonds core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov15 core.test: SingleNCAARotamerLibraryTests:test_d_nme_trp_rotamer_well_scoring core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep core.test: MinimizerTests:test_simple_min core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_dslf_fa13 core.test: PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core.test: conformation_stored_restypes_tests:test_serialization core.test: SapConstraintEnergyTests:test_fast_partial_packing core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_intra_rep core.test: ContactOrderEnergy_Tests:test_eval_energy core.test: ImplicitLipidInfo:test_g_radius core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core.test: ResiduePropertySelectorTests:test_xml_interface core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_iso core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama core.test: ResidueTest:test_isLigand core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core.test: ImplicitLipidInfo:test_implicit_lipid_info_initialization core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_rama core.test: MolFileIODataTests:test_sdfreader core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_current_default_scorefxn core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_rep core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close core.test: SequenceSymmetricAnnealerTests:test_xml_validation core.test: SymmGlyTests:test_symm_gly_fa_dun core.test: PCSSingleSetTests:test_PCSSingleSet_instantiation_and_scaling core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_lk_ball_wtd core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_rep core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_rot core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_omega core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega core.test: ClashBasedShellSelectorTests:test_bool_mask_from_task core.test: mmtf_IO:test_mmtf_model_io core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core.test: ClashBasedShellSelectorTests:test_add_clashes_to_shell core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_current_default_scorefxn core.test: ImplicitLipidInfo:test_f_depth_gradient core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_dun core.test: SymmGlyTests:test_symm_gly_fa_elec core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_rep core.test: SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core.test: SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring_2 core.test: SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core.test: SingleNCAARotamerLibraryTests:test_equivalence_independent_of_rotamer_order core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_yhh_planarity core.test: MinimizerTests:test_dfpmin_armijo core.test: SequenceSymmetricAnnealerTests:test_recover_symmetry core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro core.test: SimpleMetricTests:test_string_metric core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_intra_rep core.test: SingleNCAARotamerLibraryTests:test_peptoid_602_rotamer_well_scoring core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_omega core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_sol core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_intra_sol_xover4 core.test: PCSDataTests:test_PCSData_creation_by_NMRDataFactory core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_semi core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hxl_tors core.test: RotamerUtils:test_rotamer_recovery core.test: NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility_cyc_pep core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_p_aa_pp core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_current_default_scorefxn core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core.test: MolFileIODataTests:test_sdfreader_v3000 core.test: ClashBasedShellSelectorTests:test_parse_my_tag core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama core.test: PCSSingleSetTests:test_calc_tensor_and_score_svd_on_scaled_data core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_cart_bonded core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_rep core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_atr core.test: SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape_2 core.test: PoseUtilTests:test_pose_string_map core.test: ResidueTest:test_recursive_identification_of_connection_dependencies_peptoid core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama_prepro core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_rot core.test: ClashBasedShellSelectorTests:test_is_sc_xx_clash core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball core.test: RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group1 core.test: RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group2 core.test: RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group3 core.test: RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group4 core.test: SymmGlyTests:test_symm_gly_fa_atr core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core.test: SymmDL_peptoid_Tests:test_symm_DL_rama_prepro core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_beta_nov16 core.test: SapConstraintEnergyTests:test_selectors core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_p_aa_pp core.test: SymmDL_peptoid_Tests:test_symm_DL_cart_bonded core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_rama core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_sol core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_pro_close core.test: conformation_stored_restypes_tests:test_score_restype_noset core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_p_aa_pp core.test: SymmDL_peptoid_Tests:test_symm_DL_default_scorefxn core.test: AtomicDepthTests:test_AtomicDepth_depth_test_oob core.test: SingleNCAARotamerLibraryTests:test_DPP_rotamer_well_scoring core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_dun core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_atr core.test: SymmGlyTests:test_symm_gly_rama_prepro core.test: WaterMediatedHbondMetricTests:test_depth_two core.test: SimpleMetricTests:test_seq_metric core.test: mmtf_IO:test_mmtf_roundtrip core.test: SymmGly_betanov15_Tests:test_symm_gly_p_aa_pp core.test: PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_manual_symmetry_handling core.test: MinimizerTests:test_lbfgs_armijo core.test: RamaPreProTests_oligourea:test_random_tors_canonical_d_aa_prepro core.test: SymmGlyTests:test_symm_gly_omega core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_hbonds core.test: SingleNCAARotamerLibraryTests:test_peptoid_001_rotamer_well_scoring core.test: SimpleMetricTests:test_per_residue_real_metric core.test: NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility core.test: SymmDL_peptoid_Tests:test_symm_DL_yhh_planarity core.test: PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_automatic_symmetry_deduction core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_pro_close core.test: ClashBasedShellSelectorTests:test_bool_mask_from_resnums core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core.test: PoseUtilTests:test_reasonable_foldtree core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_cart_bonded core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_dun core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_elec core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hbonds core.test: SymmDL_peptoid_Tests:test_symm_DL_pro_close core.test: GlycanTreeSetTests:test_non_glycan_pose core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_atr core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core.test: SimpleMetricTests:test_ss_metric core.test: SequenceSymmetricAnnealerTests:test_different_accepted_restypes_for_linked_residues core.test: SapConstraintEnergyTests:test_mover core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_dev core.test: SymmGlyTests:test_symm_gly_fa_rep core.test: TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13 core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_elec core.test: ImplicitLipidInfo:test_f_depth core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_elec core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core.test: mmtf_IO:test_aiPose_from_sfr core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_sol core.test: ImplicitLipidInfo:test_df_cavity core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core.test: PoseUtilTests:test_chainletter_functions core.test: GlycanTreeSetTests:test_serialization_and_clone core.test: SingleNCAARotamerLibraryTests:test_B3C_rotamer_well_scoring core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core.test: SymmGlyTests:test_symm_gly_rama core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_dslf_fa13 core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_pro_close core.test: RotamerUtils:test_residue_rotamer_recovery core.test: TestAutoDetectGlycanConnections:test_auto_detect_pdb_read core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_beta_nov16 core.test: PDB_w_glycans_IO:test_pdb_io core.test: ImplicitLipidInfo:test_f_cavity_gradient core.test: mmtf_IO:test_bond_info_io core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_rep core.test: mmtf_IO:test_mmtf_noncanonicals core.test: SimpleMetricTests:test_real_metric core.test: PoseUtilTests:test_renumber_pdbinfo_based_on_conf_chains core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core.test: conformation_stored_restypes_tests:test_cartmin_restype_noset core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_beta_nov15 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_dun core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_rep core.test: PoseUtilTests:test_pose_float_map core.test: conformation_stored_restypes_tests:test_min_restype_noset core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_omega core.test: SymmDL_peptoid_Tests:test_symm_DL_rama core.test: SymmGly_betanov15_Tests:test_symm_gly_omega core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core.test: SymmGlyTests:test_symm_gly_cart_bonded core.test: mmtf_IO:test_add_or_read_extra_data core.test: MinimizerTests:test_linmin_iterated core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hxl_tors core.test: AtomicDepthTests:test_AtomicDepth_depth_test_40 core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_talaris2014 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_elec core.test: PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_automatic_symmetry_deduction core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_cart_bonded core.test: SapConstraintEnergyTests:test_lightning_packing_partial core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_rep core.test: ImplicitLipidInfo:test_f_cavity core.test: GlycanTreeSetTests:test_glycan_tree_set core.test: GlycanTreeSetTests:test_glycan_end_residue_deletion core.test: WaterMediatedHbondMetricTests:test_basic_functions core.test: SymmDL_peptoid_Tests:test_symm_DL_hbonds core.test: ResidueTest:test_Residue_resolve_partial_atom_id_peptide core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_talaris2014 core.test: RamaPreProTests_oligourea:test_random_tors_canonical_d_aa core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core.test: SingleNCAARotamerLibraryTests:test_peptoid_601_rotamer_well_scoring core.test: ClashBasedShellSelectorTests:test_task_from_resnums core.test: SequenceSymmetricAnnealerTests:test_index_residue_selectors core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama core.test: ClashBasedShellSelectorTests:test_task_from_bool_mask core.test: conformation_stored_restypes_tests:test_load_restype_conf core.test: RamaPreProTests_oligourea:test_random_tors_canonical_prepro core.test: SymmDL_peptoid_Tests:test_symm_DL_omega core.test: SequenceSymmetricAnnealerTests:test_initialise_annealer_from_xml core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_cart_bonded core.test: PeptoidDesignTests:test_design_001_601_602 core.test: SymmDL_peptoid_Tests:test_peptoid_mirroring core.test: SymmGly_betanov15_Tests:test_symm_gly_rama core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_current_default_scorefxn core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_elec core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_p_aa_pp core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_semi core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama_prepro core.test: PoseUtilTests:test_chain_designations core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_yhh_planarity core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_omega core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core.test: mmtf_IO:test_mmtf_string_float_map_IO core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_atr core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hbonds core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_omega core.test: SapConstraintEnergyTests:test_partial_packing core.test: ResidueTest:test_recursive_identification_of_connection_dependencies core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core.test: AtomicDepthTests:test_AtomicDepth_depth_test_polyleu_40 core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core.test: SymmGly_betanov15_Tests:test_symm_gly_default_scorefxn core.test: ImplicitLipidInfo:test_f_hydration_gradient core.test: conformation_stored_restypes_tests:test_load_pdb_with_pose_copy core.test: MinimizerTests:test_dfpmin_armijo_nonmonotone core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_sol core.test: SymmGly_betanov15_Tests:test_symm_gly_rama_prepro core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_dslf_fa13 core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core.test: ResidueTest:test_fill_missing_atoms_polymer core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_pro_close core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_iso core.test: SymmDL_peptoid_Tests:test_symm_DL_dslf_fa13 core.test: SymmGly_betanov15_Tests:test_symm_gly_fa_dun core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_rep core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core.test: ClashBasedShellSelectorTests:test_selections core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core.test: PCSDataTests:test_PCSData_score_calculation_with_spinlabel core.test: ResidueTest:test_residue_serialization core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_pro_close core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec core.test: MinimizerTests:test_lbfgs_armijo_nonmonotone core.test: conformation_stored_restypes_tests:test_load_pdb core.test: SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep core.test: NPDHBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_rama_prepro core.test: mmtf_IO:test_add_link_and_ss_information core.test: MolFileIODataTests:test_extra_data core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13 core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_rep core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama_prepro core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_atr core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama core.test: SequenceSymmetricAnnealerTests:test_overlapping_index_residue_selectors core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_atr core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro2 core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core.test: SymmGlyTests:test_symm_gly_fa_intra_rep core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: conformation_stored_restypes_tests:test_pack_restype_noset core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_sol core.test: SimpleMetricTests:test_glycan_layer_metric core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_cart_bonded core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded core.test: mmtf_IO:test_mmtf_simple_metric_IO core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core.test: NPDHBondEnergyTests:test_npd_hbond_symmetric_score_function_bad_symm_hbond_derivs core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro core.test: GlycanTreeSetTests:test_serialization_observation core.test: PCSDataTests:test_scaled_PCSData_score_calculation core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_elec core.test: SequenceSymmetricAnnealerTests:test_chain_similiarity_with_alternative_logic core.test: PoseUtilTests:test_unique_chains core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core.test: PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_manual_symmetry_handling core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_pro_close core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core.test: ResidueTest:test_isDNA core.test: SymmGlyTests:test_symm_gly_fa_sol core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: SequenceSymmetricAnnealerTests:test_fail_in_packing_from_no_common_res_types core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_yhh_planarity core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core.test: SymmGlyTests:test_symm_gly_default_scorefxn core.test: SimpleMetricTests:test_composite_string_metric core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4 core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core.test: SingleNCAARotamerLibraryTests:test_DAB_rotamer_well_scoring core.test: ClashBasedShellSelectorTests:test_resnums_from_bool_mask core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr core.test: CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core.test: WaterMediatedHbondMetricTests:test_depth_one_with_self core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_cart_bonded core.test: SimpleMetricTests:test_per_residue_clash_metric core.test: ClashBasedShellSelectorTests:test_resnums_from_task core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_hbonds core.test: SapConstraintEnergyTests:test_math_mover core.test: SymmGlyTests:test_symm_gly_p_aa_pp core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_dev core.test: PCSSingleSetTests:test_calc_tensor_and_score_svd core.test: SymmGlyTests:test_symm_gly_talaris2014 core.test: PoseUtilTests:test_compare_atom_coordinates core.test: PoseUtilTests:test_conformation_sha1 core.test: SimpleMetricTests:test_residue_summary_metric core.test: SymmGly_betanov15_Tests:test_symm_gly_beta_nov15 core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_dun core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014 core.test: SimpleMetricTests:test_utility_metrics core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_dslf_fa13 core.test: PoseUtilTests:test_chainid_functions core.test: mmtf_IO:test_mmtf_testsuite core.test: AtomicDepthTests:test_AtomicDepth_depth_test_util_40 core.test: SingleNCAARotamerLibraryTests:test_B3N_rotamer_well_scoring core.test: SymmGly_betanov15_Tests:test_symm_gly_hbonds core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_intra_rep core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_pro_close core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_omega core.test: SingleNCAARotamerLibraryTests:test_ORN_rotamer_well_scoring core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_lk_ball_wtd core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core.test: MinimizerTests:test_dfpmin core.test: PCSSingleSetTests:test_calc_tensor_and_score_nls_fixed_XaxXrh core.test: ScTests:test_sc core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_rep core.test: CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core.test: SymmDL_peptoid_Tests:test_symm_DL_fa_elec core.test: SingleNCAARotamerLibraryTests:test_nme_trp_rotamer_well_scoring core.test: PCSSingleSetTests:test_calc_tensor_and_score_nls_svd_different_weightings core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_yhh_planarity core.test: SimpleMetricTests:test_interaction_energy_metric core.test: PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp core.test: PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_manual_symmetry_handling core.test: CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_p_aa_pp core.test: GlycanTreeSetTests:test_glycosylations core.test: AtomicDepthTests:test_AtomicDepth_depth_test_14 core.test: SimpleMetricTests:test_per_residue_string_metric core.test: ResidueTest:test_insert_partial_atom_ids_for_mainchain_torsion core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core.test: CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_intra_rep core.test: SymmGlyTests:test_symm_gly_hbonds core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core.test: SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro2 core.test: SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_hbonds core.test: CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds core.test: ResidueTest:test_fill_missing_atoms core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_elec core.test: WaterMediatedHbondMetricTests:test_only_depth_two core.test: CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep core.test: ImplicitLipidInfo:test_f_hydration core.test: MinimizerTests:test_linmin_iterated_atol core.test: PCSDataTests:test_PCSData_score_calculation_with_gridsearch core.test: CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core.test: RamaPreProTests_oligourea:test_random_tors_canonical core.test: SymmDLMin_peptoid_Tests:test_symm_DL_min_dslf_fa13 core.test: CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_elec core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core.test: PDB_w_glycans_IO:test_glycan_fragment core.test: CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core.test: SymmGly_betanov15_Tests:test_symm_gly_cart_bonded protocols.test: GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_D_beforepro protocols.test: MembraneUtil:test_compute_structure_based_embedding6 protocols.test: MembraneUtil:test_compute_structure_based_embedding5 protocols.test: MembraneUtil:test_compute_structure_based_embedding4 protocols.test: MembraneUtil:test_compute_structure_based_embedding3 protocols.test: MembraneUtil:test_compute_structure_based_embedding2 protocols.test: MembraneUtil:test_compute_structure_based_embedding1 protocols.test: AlignResiduesMoverTests:test_align_theozyme protocols.test: MembraneUtil:test_compute_structure_based_embedding8 protocols.test: GenericSimulatedAnnealerTests:test_acceptance protocols.test: AlignPDBInfoToSequencesTests:test_ctor_and_operators protocols.test: SimpleMetricProtocolsTests:test_string_metric protocols.test: MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols.test: NubInitioMoverTests:test_name protocols.test: MembraneUtil:test_membrane_bb_rmsd_no_super protocols.test: MembraneUtil:test_create_specific_membrane_foldtree protocols.test: AlignPDBInfoToSequencesTests:test_throw_on_fail protocols.test: MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols.test: MRSJobQueenTests:test_typo_in_score_function protocols.test: MembraneUtil:test_is_fixed_on_fixed_memb protocols.test: PointMutScanDriverTests:test_calculate_neighbor_table protocols.test: MembraneUtil:test_create_membrane_foldtree_anchor_com protocols.test: MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols.test: GenerateMainchainPotentialTests:test_full_run_GLY_asymm protocols.test: AlignPDBInfoToSequencesTests:test_parse_target_tag protocols.test: AddMembraneMoverTest:test_initial_spans_setup protocols.test: MembraneUtil:test_tm_com protocols.test: XmlObjectsTests:test_static_instantiation_mover protocols.test: MembraneUtil:test_split_topology_by_jump_noshift protocols.test: AddMembraneMoverTest:test_single_tm_span_pose protocols.test: MembraneUtil:test_average_antiparallel_embeddings protocols.test: GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_beforepro protocols.test: SimpleMetricProtocolsTests:test_real_metric protocols.test: MembraneUtil:test_compute_embeddings_by_chain protocols.test: GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical protocols.test: PlainSilentFileJobDistributorTest:test_next_job protocols.test: MembraneUtil:test_split_topology_by_jump protocols.test: GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_D protocols.test: PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols.test: AddMembraneMoverTest:test_default_membrane_position protocols.test: MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols.test: XmlObjectsTests:test_parsed_protocol protocols.test: AntibodySeqDesign:test_task_ops protocols.test: AntibodyTaskOps:test_DisableCDRsOperation protocols.test: AlignPDBInfoToSequencesTests:test_single protocols.test: MembraneUtil:test_average_embeddings protocols.test: DockingTest:test_DockingPacking protocols.test: PeptideDeriverFilterTests:test_assignment protocols.test: AntibodyTaskOps:test_DisableAntibodyRegionOperation protocols.test: AntibodyTaskOps:test_AddCDRProfileSetsOperation protocols.test: GenerateMainchainPotentialTests:test_full_run_VAL_prepro protocols.test: PeptideDeriverFilterTests:test_copy_ctor protocols.test: GenerateMainchainPotentialTests:test_full_run_ALA protocols.test: GenerateMainchainPotentialTests:test_full_run_GLY_symm protocols.test: SimpleMetricProtocolsTests:test_composite_total_energy_metric protocols.test: PeptideDeriverFilterTests:test_rosettascripts_options protocols.test: AlignPDBInfoToSequencesTests:test_multiple protocols.test: XmlObjectsTests:test_static_instantiation_filter protocols.test: SimpleMetricProtocolsTests:test_composite_real_metric protocols.test: SimpleMetricProtocolsTests:test_total_energy_metric protocols.test: PointMutScanDriverTests:test_fill_mutations_list protocols.test: NubInitioMoverTests:test_one_motif protocols.test: AntibodyInfoTests:test_info_functions protocols.test: StructureDataTests:test_enzdes_remarks protocols.test: AntibodyInfoTests:test_cdr_numbering_and_transform protocols.test: EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea protocols.test: GenerateMainchainPotentialTests:test_pose_generation_prepro protocols.test: RotamerRecoveryTests:test_RotamerRecovery_main protocols.test: GenerateMainchainPotentialTests:test_full_run_B3N protocols.test: MembraneUtil:test_pose_tm_COM protocols.test: AddMembraneMoverTest:test_conformation_invariant protocols.test: AlignPDBInfoToSequencesTests:test_dna_align protocols.test: AddMembraneMoverTest:test_membrane_rsd_tracking protocols.test: AlignPDBInfoToSequencesTests:test_real_example protocols.test: AntibodyInfoTests:test_kink_functions protocols.test: AntibodyTaskOps:test_AddCDRProfilesOperation protocols.test: AntibodyInfoTests:test_renumbering protocols.test: AddMembraneMoverTest:test_anchored_foldtree protocols.test: GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_D protocols.test: RNA_DeNovoOptimizerTest:test_sarcin_ricin_loop_buildup protocols.test: GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_beforepro protocols.test: AntibodyTaskOps:test_RestrictToCDRsAndNeighbors protocols.test: MembraneUtil:test_is_fixed_on_moveable_memb protocols.test: MembraneUtil:test_membrane_bb_rmsd_with_super protocols.test: MembraneUtil:test_check_vector protocols.test: PeptideDeriverFilterTests:test_report_format_parsing protocols.test: MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_fixBBmatching protocols.test: AddMembraneMoverTest:test_existing_membrane_rsd protocols.test: SimpleMetricProtocolsTests:test_rmsd_metric protocols.test: MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols.test: MembraneUtil:test_rsd_closest_chain_com protocols.test: GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical protocols.test: GenerateMainchainPotentialTests:test_full_run_VAL protocols.test: PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols.test: MoverFactoryTests:test_all_movers_define_valid_xsds protocols.test: MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols.test: MPLipidAccessibilityTest:test_parse_my_tag_input protocols.test: SimpleMetricProtocolsTests:test_dihedral_metric protocols.test: SimpleMetricProtocolsTests:test_composite_string_metric protocols.test: DockingTest:test_DockingProtocolFunctions protocols.test: MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols.test: PointMutScanDriverTests:test_make_specific_mutant protocols.test: MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols.test: XmlObjectsTests:test_includes protocols.test: StructureDataTests:test_move_segments protocols.test: GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_D_beforepro protocols.test: EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea_s2_symm protocols.test: AlignPDBInfoToSequencesTests:test_SequenceSpecification protocols.test: XmlObjectsTests:test_static_instantiation_simple_metric protocols.test: PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols.test: XmlObjectsTests:test_string_instantiation protocols.test: PeptideDeriverFilterTests:test_protocol protocols.test: MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_fixBBmatching protocols.test: MRSJobQueenTests:test_incorrect_attribute_value protocols.test: AntibodySeqDesign:test_utility_functions protocols.test: DockingTest:test_DockingProtocol_clone protocols.test: GenericSimulatedAnnealerTests:test_boltzmann protocols.test: XmlObjectsTests:test_static_instantiation_residue_selector protocols.test: NubInitioMoverTests:test_two_motifs protocols.test: MembraneUtil:test_calc_helix_axis protocols.test: DockingTest:test_DockingRigidBodyMinimize protocols.test: StructureDataTests:test_delete_segment protocols.test: GenerateMainchainPotentialTests:test_pose_generation protocols.test: AddMembraneMoverTest:test_initial_foldtree protocols.test: MembraneUtil:test_split_topology_by_chain_noshift protocols.test: StructureDataTests:test_slice protocols.test: AlignResiduesMoverTests:test_tomponent_cstfile protocols.test: AntibodySeqDesign:test_normal_tf_generation protocols.test: AlignPDBInfoToSequencesTests:test_set_modes protocols.test: XmlObjectsTests:test_static_instantiation_taskop protocols.test: MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols.test: MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols.test: MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_end2endMatching protocols.test: DockingTest:test_EllipsoidalRandomizationMover protocols.test: MembraneUtil:test_rsd_closest_pose_tm_COM protocols.test: SimpleMetricProtocolsTests:test_protocol_settings_metric protocols.test: MembraneUtil:test_compute_structure_based_embedding7 protocols.test: AddMembraneMoverTest:test_multi_mem_pose1 protocols.test: AddMembraneMoverTest:test_multi_mem_pose2 protocols.test: AddMembraneMoverTest:test_membrane_jump_tracking protocols.test: AntibodySeqDesign:test_graft_tf_generation1 protocols.test: AntibodySeqDesign:test_graft_tf_generation2 protocols.test: MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols.test: GenericSimulatedAnnealerTests:test_checkpointing protocols.test: MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols.test: AntibodyInfoTests:test_camelid protocols.test: MembraneUtil:test_rsd_closest_chain_tm_com protocols.test: StructureDataTests:test_non_peptidic_bonds protocols.test: MembraneUtil:test_calc_helix_angles protocols.test: EnergyBasedClusteringTests_oligourea:test_dihedral_cluster_cyclic_oligourea protocols.test: MembraneUtil:test_angle_rmsd_method protocols.test: XmlObjectsTests:test_static_instantiation_score_function protocols.test: AlignPDBInfoToSequencesTests:test_mode_enum protocols.test: DockingTest:test_DockingSlideIntoContact protocols.test: MembraneUtil:test_chain_com protocols.test: MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols.test: MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_end2endMatching protocols.test: XmlObjectsTests:test_file_instantiation protocols.test: MembraneUtil:test_membrane_bb_rmsd_with_super_allatom utility.test: SimulateMPITests:test_double utility.test: SimulateMPITests:test_integers utility.test: SimulateMPITests:test_nprocs utility.test: SimulateMPITests:test_string utility.test: SimulateMPITests:test_doubles utility.test: SimulateMPITests:test_integer utility.test: SimulateMPITests:test_char Success rate: 85% ---------- End of Unit test summary Done!