-linmem_ig 100										# limit memory to store rotamer pair interactions
-use_input_sc										# Include rotamers from the input structure
-ex1
-ex2
-nstruct 10											# Generate 10 models
-s 4HKX_relax.pdb 3UBQ_relax.pdb					# Use structure 4HKX as input
-mute protocols.simple_moves.GenericMonteCarloMover	# Mute the output from the GenericMonteCarloMover
-run:msd_job_dist					# Use the multistate design job distributor
-run:msd_randomize					# Randomize order of input PDBs in multistate design