-in:file:s /home/ucbechz/Scratch/20141212_ddg_renumber/1A/input/C226S_renumber.pdb -resfile /home/ucbechz/Scratch/20141212_ddg_renumber/1A/input/my_input_resfile -ddg:weight_file soft_rep_design -ddg:minimization_scorefunction pre_talaris_2013_standard -ddg::minimization_patch /shared/ucl/apps/Rosetta/rosetta_2014.34.57213_bundle/main/database/scoring/weights/score12.wts_patch -ddg::iterations 50 -ddg::dump_pdbs true -ignore_unrecognized_res -ddg::local_opt_only false -ddg::min_cst true -constraints::cst_file /home/ucbechz/Scratch/20141212_ddg_renumber/1A/input/input.cst -ddg::suppress_checkpointing true -in::file::fullatom -ddg::mean false -ddg::min true -ddg::sc_min_only false -ddg::ramp_repulsive true -mute all -unmute core.optimization.LineMinimizer -ddg::output_silent true -restore_pre_talaris_2013_behavior