-in -file -s './KGSADH_0006.pdb ./3HPA_0001.pdb' -extra_res_fa ./3HPA.params -out -nstruct 6000 # -mute all -mute core.util.prof ## dont show timing info -mute core.io.database -packing -no_optH -ex1 -ex1aro -ex2 -resfile resfile.txt -parser -protocol ligand_dock.xml