core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: rosetta.binary.linux.release-315 r315 2022.12+release.a4d7970 a4d79705213bc2acd6b51e370eddbb2738df6866 https://www.rosettacommons.org 2022-03-22T15:27:26.590656 core.init: command: GlycanDock.linuxgccrelease -include_sugars -alternate_3_letter_codes pdb_sugar -auto_detect_glycan_connections -in:file:s BMPin9.pdb -in:file:native BMP7.pdb -nstruct 1 -ex1 -ex2 -ex3 -ex4 -ex1aro -ex2aro -carbohydrates:glycan_dock:prepack_only true -docking:partners A_X -out:pdb basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=1044254752 seed_offset=0 real_seed=1044254752 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1044254752 RG_type=mt19937 core.init: Resolved executable path: /home/gebauer/rosetta.binary.linux.release-315/main/source/build/src/release/linux/5.15/64/x86/gcc/7/default/GlycanDock.default.linuxgccrelease core.init: Looking for database based on location of executable: /home/gebauer/rosetta.binary.linux.release-315/main/database/ protocols.glycan_docking.GlycanDockProtocol: Clearing counters protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushed BMPin9.pdb nstruct index 1 core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 1645 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.87749 seconds. core.import_pose.import_pose: File 'BMP7.pdb' automatically determined to be of type PDB core.io.pdb.HeaderInformation: [ WARNING ] Deposition day not in range [1, 31]: 0 core.io.pdb.HeaderInformation: [ WARNING ] Unrecognized month in HEADER deposition date core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.io.util: Automatic glycan connection is activated. core.io.util: Start reordering residues. core.io.util: Corrected glycan residue order (internal numbering): [] core.io.util: core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue HIS_D:CtermProteinFull 104 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue HIS_D:CtermProteinFull 208 core.conformation.Conformation: Found disulfide between residues 3 69 core.conformation.Conformation: current variant for 3 CYS core.conformation.Conformation: current variant for 69 CYS core.conformation.Conformation: current variant for 3 CYD core.conformation.Conformation: current variant for 69 CYD core.conformation.Conformation: Found disulfide between residues 32 101 core.conformation.Conformation: current variant for 32 CYS core.conformation.Conformation: current variant for 101 CYS core.conformation.Conformation: current variant for 32 CYD core.conformation.Conformation: current variant for 101 CYD core.conformation.Conformation: Found disulfide between residues 36 103 core.conformation.Conformation: current variant for 36 CYS core.conformation.Conformation: current variant for 103 CYS core.conformation.Conformation: current variant for 36 CYD core.conformation.Conformation: current variant for 103 CYD core.conformation.Conformation: Found disulfide between residues 68 172 core.conformation.Conformation: current variant for 68 CYS core.conformation.Conformation: current variant for 172 CYS core.conformation.Conformation: current variant for 68 CYD core.conformation.Conformation: current variant for 172 CYD core.conformation.Conformation: Found disulfide between residues 107 173 core.conformation.Conformation: current variant for 107 CYS core.conformation.Conformation: current variant for 173 CYS core.conformation.Conformation: current variant for 107 CYD core.conformation.Conformation: current variant for 173 CYD core.conformation.Conformation: Found disulfide between residues 136 205 core.conformation.Conformation: current variant for 136 CYS core.conformation.Conformation: current variant for 205 CYS core.conformation.Conformation: current variant for 136 CYD core.conformation.Conformation: current variant for 205 CYD core.conformation.Conformation: Found disulfide between residues 140 207 core.conformation.Conformation: current variant for 140 CYS core.conformation.Conformation: current variant for 207 CYS core.conformation.Conformation: current variant for 140 CYD core.conformation.Conformation: current variant for 207 CYD protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB BMPin9.pdb core.import_pose.import_pose: File 'BMPin9.pdb' automatically determined to be of type PDB core.io.pdb.HeaderInformation: [ WARNING ] Deposition day not in range [1, 31]: 0 core.io.pdb.HeaderInformation: [ WARNING ] Unrecognized month in HEADER deposition date core.chemical.GlobalResidueTypeSet: Loading (but possibly not actually using) 'SGN' from the PDB components dictionary for residue type 'pdb_SGN' core.chemical.GlobalResidueTypeSet: Loading (but possibly not actually using) 'IDS' from the PDB components dictionary for residue type 'pdb_IDS' core.io.util: Link between 1 and 2 is ill-formed - one/both residues don't exist!. core.io.util: Link between 2 and 3 is ill-formed - one/both residues don't exist!. core.io.util: Link between 3 and 4 is ill-formed - one/both residues don't exist!. core.io.util: Link between 4 and 5 is ill-formed - one/both residues don't exist!. core.io.util: Link between 5 and 6 is ill-formed - one/both residues don't exist!. core.io.util: Link between 6 and 7 is ill-formed - one/both residues don't exist!. core.io.util: Link between 7 and 8 is ill-formed - one/both residues don't exist!. core.io.util: Link between 8 and 9 is ill-formed - one/both residues don't exist!. core.io.util: Link between 9 and 10 is ill-formed - one/both residues don't exist!. core.io.util: Link between 10 and 11 is ill-formed - one/both residues don't exist!. core.io.util: Link between 11 and 12 is ill-formed - one/both residues don't exist!. core.io.util: Link between 12 and 13 is ill-formed - one/both residues don't exist!. core.io.util: Link between 13 and 14 is ill-formed - one/both residues don't exist!. core.io.util: Link between 14 and 15 is ill-formed - one/both residues don't exist!. core.io.util: Link between 15 and 16 is ill-formed - one/both residues don't exist!. core.io.util: Link between 16 and 17 is ill-formed - one/both residues don't exist!. core.io.util: Link between 17 and 18 is ill-formed - one/both residues don't exist!. core.io.util: Link between 18 and 19 is ill-formed - one/both residues don't exist!. core.io.util: Link between 19 and 20 is ill-formed - one/both residues don't exist!. core.io.util: Link between 20 and 21 is ill-formed - one/both residues don't exist!. core.io.util: Link between 21 and 22 is ill-formed - one/both residues don't exist!. core.io.util: Link between 22 and 23 is ill-formed - one/both residues don't exist!. core.io.util: Link between 23 and 24 is ill-formed - one/both residues don't exist!. core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.io.util: Automatic glycan connection is activated. core.io.util: Start reordering residues. core.io.util: Corrected glycan residue order (internal numbering): [] core.io.util: core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue HIS_D:CtermProteinFull 104 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 106 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 107 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 108 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 109 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 110 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 111 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 112 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 113 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 114 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 115 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 116 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 117 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 118 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 119 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 120 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 121 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 122 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 123 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 124 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 125 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 126 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_SGN 127 core.conformation.Conformation: [ WARNING ] missing heavyatom: O1 on residue pdb_IDS 128 core.conformation.Conformation: [ WARNING ] missing heavyatom: O4 on residue pdb_IDS 128 core.conformation.Conformation: Found disulfide between residues 3 69 core.conformation.Conformation: current variant for 3 CYS core.conformation.Conformation: current variant for 69 CYS core.conformation.Conformation: current variant for 3 CYD core.conformation.Conformation: current variant for 69 CYD core.conformation.Conformation: Found disulfide between residues 32 101 core.conformation.Conformation: current variant for 32 CYS core.conformation.Conformation: current variant for 101 CYS core.conformation.Conformation: current variant for 32 CYD core.conformation.Conformation: current variant for 101 CYD core.conformation.Conformation: Found disulfide between residues 36 103 core.conformation.Conformation: current variant for 36 CYS core.conformation.Conformation: current variant for 103 CYS core.conformation.Conformation: current variant for 36 CYD core.conformation.Conformation: current variant for 103 CYD core.pack.pack_missing_sidechains: packing residue number 106 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 107 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 108 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 109 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 110 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 111 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 112 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 113 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 114 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 115 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 116 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 117 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 118 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 119 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 120 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 121 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 122 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 123 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 124 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 125 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 126 because of missing atom number 7 atom name O1 core.pack.pack_missing_sidechains: packing residue number 127 because of missing atom number 8 atom name O1 core.pack.pack_missing_sidechains: packing residue number 128 because of missing atom number 7 atom name O1 core.pack.task: Packer task: initialize from command line() core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop core.scoring.ScoreFunctionFactory: The -include_sugars flag was used with no sugar_bb weight set in the weights file. Setting sugar_bb weight to 0.5 by default. core.scoring.ScoringManager: Creating CHI Energy Function. core.scoring.carbohydrates.CHIEnergyFunction: Setting up chi sampling core.scoring.ScoringManager: Creating carbohydrate omega preferences function. core.scoring.carbohydrates.OmegaPreferencesFunction: Setting up omega preference sampling core.scoring.ScoreFunctionFactory: The -include_sugars flag was used without fa_intra_rep_xover4 term in the scorefunction. Setting this term's weight to 0.55. It is generally recommended to use the -beta scorefunction (Rosetta-ICO) with sugars, which includes this and other desired terms such as those bridging waters basic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat core.scoring.elec.util: Read 40 countpair representative atoms core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true. core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated. core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /home/gebauer/rosetta.binary.linux.release-315/main/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/home/gebauer/rosetta.binary.linux.release-315/main/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'. core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.375129 seconds to load from binary core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_SGN core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for pdb_IDS core.pack.pack_rotamers: built 612 rotamers at 23 positions. core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.ScoreFunctionFactory: The -include_sugars flag was used with no sugar_bb weight set in the weights file. Setting sugar_bb weight to 0.5 by default. core.scoring.ScoreFunctionFactory: The -include_sugars flag was used without fa_intra_rep_xover4 term in the scorefunction. Setting this term's weight to 0.55. It is generally recommended to use the -beta scorefunction (Rosetta-ICO) with sugars, which includes this and other desired terms such as those bridging waters core.import_pose.import_pose: File 'BMP7.pdb' automatically determined to be of type PDB core.io.pdb.HeaderInformation: [ WARNING ] Deposition day not in range [1, 31]: 0 core.io.pdb.HeaderInformation: [ WARNING ] Unrecognized month in HEADER deposition date core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.io.util: Automatic glycan connection is activated. core.io.util: Start reordering residues. core.io.util: Corrected glycan residue order (internal numbering): [] core.io.util: core.io.util: Found 0 glycan linkages in the structure based on atomic distances core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue HIS_D:CtermProteinFull 104 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue HIS_D:CtermProteinFull 208 core.conformation.Conformation: Found disulfide between residues 3 69 core.conformation.Conformation: current variant for 3 CYS core.conformation.Conformation: current variant for 69 CYS core.conformation.Conformation: current variant for 3 CYD core.conformation.Conformation: current variant for 69 CYD core.conformation.Conformation: Found disulfide between residues 32 101 core.conformation.Conformation: current variant for 32 CYS core.conformation.Conformation: current variant for 101 CYS core.conformation.Conformation: current variant for 32 CYD core.conformation.Conformation: current variant for 101 CYD core.conformation.Conformation: Found disulfide between residues 36 103 core.conformation.Conformation: current variant for 36 CYS core.conformation.Conformation: current variant for 103 CYS core.conformation.Conformation: current variant for 36 CYD core.conformation.Conformation: current variant for 103 CYD core.conformation.Conformation: Found disulfide between residues 68 172 core.conformation.Conformation: current variant for 68 CYS core.conformation.Conformation: current variant for 172 CYS core.conformation.Conformation: current variant for 68 CYD core.conformation.Conformation: current variant for 172 CYD core.conformation.Conformation: Found disulfide between residues 107 173 core.conformation.Conformation: current variant for 107 CYS core.conformation.Conformation: current variant for 173 CYS core.conformation.Conformation: current variant for 107 CYD core.conformation.Conformation: current variant for 173 CYD core.conformation.Conformation: Found disulfide between residues 136 205 core.conformation.Conformation: current variant for 136 CYS core.conformation.Conformation: current variant for 205 CYS core.conformation.Conformation: current variant for 136 CYD core.conformation.Conformation: current variant for 205 CYD core.conformation.Conformation: Found disulfide between residues 140 207 core.conformation.Conformation: current variant for 140 CYS core.conformation.Conformation: current variant for 207 CYS core.conformation.Conformation: current variant for 140 CYD core.conformation.Conformation: current variant for 207 CYD protocols.glycan_docking.GlycanDockProtocol: Setting up protein-glycoligand docking FoldTree protocols.glycan_docking.GlycanDockProtocol: Original FoldTree for Pose: protocols.glycan_docking.GlycanDockProtocol: FOLD_TREE EDGE 1 104 -1 EDGE 1 105 1 EDGE 1 106 2 EDGE 1 107 3 EDGE 1 108 4 EDGE 1 109 5 EDGE 1 110 6 EDGE 1 111 7 EDGE 1 112 8 EDGE 1 113 9 EDGE 1 114 10 EDGE 1 115 11 EDGE 1 116 12 EDGE 1 117 13 EDGE 1 118 14 EDGE 1 119 15 EDGE 1 120 16 EDGE 1 121 17 EDGE 1 122 18 EDGE 1 123 19 EDGE 1 124 20 EDGE 1 125 21 EDGE 1 126 22 EDGE 1 127 23 EDGE 1 128 24 protocols.glycan_docking.GlycanDockProtocol: New docking FoldTree for Pose: protocols.glycan_docking.GlycanDockProtocol: FOLD_TREE EDGE 1 98 -1 EDGE 98 104 -1 EDGE 98 113 1 EDGE 113 112 8 EDGE 113 114 9 EDGE 114 115 10 EDGE 115 116 11 EDGE 116 117 12 EDGE 117 118 13 EDGE 118 119 14 EDGE 119 120 15 EDGE 120 121 16 EDGE 121 122 17 EDGE 122 123 18 EDGE 123 124 19 EDGE 124 125 20 EDGE 125 126 21 EDGE 126 127 22 EDGE 127 128 23 EDGE 112 111 7 EDGE 111 110 6 EDGE 110 109 5 EDGE 109 108 4 EDGE 108 107 3 EDGE 107 106 2 EDGE 106 105 24 protocols.glycan_docking.GlycanDockProtocol: Setting up equivalent FoldTree for reference Pose ERROR: Cannot compute center of mass of zero residues! ERROR:: Exit from: src/core/pose/util.cc line: 1408 protocols.jd2.JobDistributor: [ ERROR ] [ERROR] Exception caught by JobDistributor for job BMPin9_0001 [ ERROR ]: Caught exception: File: src/core/pose/util.cc:1408 [ ERROR ] UtilityExitException ERROR: Cannot compute center of mass of zero residues! AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. protocols.jd2.JobDistributor: [ WARNING ] BMPin9_0001 reported failure and will NOT retry protocols.jd2.JobDistributor: no more batches to process... protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 3 seconds Caught Exception File: src/protocols/jd2/JobDistributor.cc:326 1 jobs failed;