core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: rosetta.source.release-210 r210 2019.06+release.4d8c807 4d8c8074e4eab340e5d26c0069d807aa5a8d6978 https://www.rosettacommons.org 2019-02-08T21:17:06.810779 core.init: command: rosetta_scripts.macosclangrelease -l list -ex1 -ex2 -use_input_sc -parser:protocol motifgrat_sc.xml -script_vars context=context.pdb motif=motif.pdb rmsd=5 NCrmsd=5 clash=50 hotspots=1:4:8:10,1:4:6,1:3,2:3:4 delta=0:0,0:0,2:0,1:2 independent=0 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=750879612 seed_offset=0 real_seed=750879612 core.init.random: RandomGenerator:init: Normal mode, seed=750879612 RG_type=mt19937 core.init: found database environment variable ROSETTA3_DB: /Users/dcoelho/Programs/rosetta-3.10/main/database protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1a0k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1a1x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1a58_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1aa2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1aaj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1acf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ad6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1agi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ahq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1am2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1amx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1anu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1aqt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ax8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ayd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ayi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1az5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b0x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b1j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b1u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b7j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b8k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1b9w_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bbc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bd8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bea_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bfg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bj7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bk7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bm8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1box_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1br9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1buo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bv1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1byl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1bz4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1c25_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1c26_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1c2a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1c44_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1c76_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cdy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cew_I.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1chd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cm3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cqa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cqy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1csp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1cuj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1czt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dc9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dcf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1df4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dhn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dol_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dsl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dto_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dun_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dvo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1dzo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1e4j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1e6m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1eic_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1enh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1enj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1eoe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ep0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1erv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1et9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1evs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ew3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1eyh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1f0m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1f32_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1f7c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1faa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fas_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fhg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fl0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fm5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fna_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1fva_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1g0x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1g9o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gak_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gbs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gd6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gh2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1grj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gs9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gvp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gxq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gyu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1gyv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1h3q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1h75_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ha1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1har_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hbq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hh1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hka_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hkf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hlw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hoe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hpt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hq8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1huf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1hyp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1i04_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1i39_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1iad_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1iap_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ifb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ifg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ihc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ilw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1iqv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1is1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1is5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1iuh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1iuk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1j23_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1j27_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1j2a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1j3a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1j74_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jb3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jhc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jhs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jl1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jmw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jon_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jos_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jpe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jsx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jvw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jwf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jwo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jxb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1jyh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1k40_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1k6k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1k95_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kex_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1khi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kiv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1klx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kmz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kn3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1knb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1koe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kqx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kt9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kte_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ku3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kwi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kxo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1kzf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1l2h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1l2p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1l3k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1l6p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lb4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lis_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lit_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lki_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lmi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ln4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lou_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lpj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lpl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lr9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1lsy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1m1h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1m5i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1m5t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1m8u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mb1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mf7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mg6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mh8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mhn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mi8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mjc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mjs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mjz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mp2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1msi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mwp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1mzl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1n05_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1n3y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1n7e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1n81_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1na5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nat_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1neu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nfn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ng6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nh9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nig_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nkd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nko_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nkr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1noa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1npu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nqy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ntn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nwa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1nwm_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o50_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o5l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o6d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o73_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o7u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o8x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1o9z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ooi_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1opc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ops_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1orc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1oxj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1oz9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1p1l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1p4p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1p6f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1p7s_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1p9h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pdb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pgv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pgx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pht_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pqe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1prq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ptf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pvx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1pzc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1q2u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1q2y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1q42_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1q5z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qad_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qau_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qgv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qj9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qkk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qm7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qmt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qnt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qoi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qqh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qql_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qqy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qto_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qzm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1qzn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r26_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r5q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r62_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r69_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r6k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r7j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r8n_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r9h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1r9w_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ra4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1rgp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1rj1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1rl6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1roa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1rss_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ryb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1s21_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1s2b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1s7k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1s9h_C.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1sau_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1sdo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1sfe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1sjy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1snb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1sqw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1srv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1t00_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1t2i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1t5i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1t7a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ten_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tg0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1thx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tie_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tig_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tmy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tol_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tp6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tsf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tua_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tuc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tud_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tvq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1twl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1txj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1tzv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u2h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u53_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u5x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u7u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u9a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1u9p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ub9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1uc7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1uct_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ug4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ugn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1uj8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1uln_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ulr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1un2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1unp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1uoy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1use_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1usm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1v05_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1v7q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1vcc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1vfq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1vjk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1vsm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1w24_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1w41_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wba_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1whi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1who_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wj9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wjg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wka_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wkx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wou_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wpa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wrj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wu3_I.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wvn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wwc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wy6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1wzw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x3o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x6j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x6q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x8y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x91_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1x9g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xak_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xaw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xbs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xg6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xg8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xgw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1xte_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1y0m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yck_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yg2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yh2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yp5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ypc_I.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yqb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yrv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ytq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yu7_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yw5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1ywp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yzf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1yzm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z0c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z21_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z27_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z7c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z9f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1z9w_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zeq_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zhv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zmf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1znw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zon_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zox_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zpw_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zuh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zv4_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zva_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zx6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/1zzk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a0j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a1v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a22_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a4d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a4v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2a6t_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2aak_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2abl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2af0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ap3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2awf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2awg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2b1k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2b8i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bdd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bk8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bmj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bo3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bqq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bqx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bvv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2byg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2bzv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2c1y_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2c6u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cg6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cgq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ciu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cjj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ckx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cmp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cwr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2cxc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2czt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2d1v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2d4p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2d59_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2d7j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2dhq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2dvk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2dvp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2dyi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e0q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e3i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e3u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e4f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e7v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e8b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2e8f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ea9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ebb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2eey_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ehg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2eif_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ejb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ejx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2era_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2es0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2eso_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2f15_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2f1y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2f6e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fc3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fcb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fd4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fd7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fht_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fi0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fi9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fjz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fl7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fo3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fph_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fr2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2frg_P.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fu0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fwg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2fzp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2g40_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2g69_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gee_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gkt_I.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gpr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gqv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gtg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gxg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2gzv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2h01_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2h8e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2hc8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2hdz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2i5h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2i6i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2i6v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2i88_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2idc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2igd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2in0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2iu1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2iug_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ivy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2iwn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j49_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j6b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j70_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j71_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j8b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j92_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2j9v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ja4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ja9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jay_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jcp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jdf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jex_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jhy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jkf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jli_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2jlj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2nls_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2nml_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2nrr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2nt3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2nx2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2o0q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2o6r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2o71_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2o85_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2obi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2och_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2oeb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2og3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2oix_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2oj4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2op6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2osa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ova_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ovc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ovo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ozf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2p52_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2p5d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2p65_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2p84_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2p8t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pb7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pcy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pe8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pii_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pko_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2plu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pnd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ppn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pst_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ptv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2pwq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2q1m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2q5x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2q9v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qev_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qf5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qgo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qhe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qpw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qr3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qvk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qvo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qvt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qwt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2qyz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2r0j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2r2y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2r6q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2r77_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2r99_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rat_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rb8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rci_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rer_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rey_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rh3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ris_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rjl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rjn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rjv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2rkq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2sga_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2v1l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2v75_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vc8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vga_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vh7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vim_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vks_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vpk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vq4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vty_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vu5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vuh_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vup_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vy6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2vy8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2w0g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2w0i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2w1r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2w4c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2w9q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2wj5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2wp7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2wry_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2wwe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2wz9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2x3m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2x4j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2x5p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2x5y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2xf6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2xgv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2xws_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2xzz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2y2t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2y90_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2y9f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yd5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ydl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ygs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ylf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yno_P.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ypm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yvq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ywd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ywj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ywn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ywx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2ywz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yx5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yxf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2yxy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2z2i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2za7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zbn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zeq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zgr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zqe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zrr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zty_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/2zw1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3a2z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3a4c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3a57_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3a7l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3adg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ady_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ag7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ap5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3b02_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3b21_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3b7x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bch_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bci_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bn6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bor_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bpv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bqe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3bzt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ca7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3caf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ce7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cfy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cm0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cmi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3co1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cou_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cp1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cqt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3csp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3csr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ctg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cx2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3cy6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3d2a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3d4m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3d79_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dcn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dfg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dgf_C.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dj9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3djn_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dsp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dvi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3dvw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3e21_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3e3v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3e4h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3e56_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3eaz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3egn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3eiz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ejf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ejg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3emi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3enu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3eod_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3erb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ers_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3esu_F.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3etp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ewq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ex9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ey6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3eye_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ezm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3f2u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3f6p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fdr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ffm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ffv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fh2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fkc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3flg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fn7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3frr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fs3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ft9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fwt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3fwu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3g39_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3g7c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3g9b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3gbs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3gg6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3gk5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3guq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3guv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3gv3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3gyw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3h0x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3h6q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ha9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hak_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hbw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hd4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hgb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hkm_C.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hnu_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hnx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hrn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hro_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hvv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3hz8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3i35_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3i42_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ich_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3id1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3id4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3idw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3if0_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ig0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ilc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ios_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ipz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ira_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3iu5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ixr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3jrz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3jte_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ju0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3jv1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3jve_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3jzz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3k1h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3k3v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3k8u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3k9a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kb5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kbe_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3key_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kg4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kh7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kp8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ksn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kt2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kt9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3kzd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3l1y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3l78_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3l9s_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3l9z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3le4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lf9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lfp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lgu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3llb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lmo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lod_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3loi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lr3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ls0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lsd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3lt3_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ltj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3m6c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3m9a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3mew_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ml3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3mm4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3mx7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3myi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3n0k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ne3_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ngp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3njm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3nph_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3nr5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3nx6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3nxc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o0p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o1z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o48_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o5e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o5j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o5p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o7k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3o8v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3obs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ofj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3oi9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3oip_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3okq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3onh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3onj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3onk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3osx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3p2f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3p2j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3p3d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3p4l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3p7k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3pac_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3piw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3pm2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3pr9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3q2c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3q6b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3q6l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3q9p_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3qa9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3qd7_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3qe1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3quw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3qv0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3qwm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3r2e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3r2i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3r87_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rd2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rdj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rdy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3re9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rff_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rfi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rgr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3ri9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rj2_X.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rjp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rjs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rkv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rln_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rnv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rrq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rt2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rvc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3rzy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3s0a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3s60_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3sft_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3sh4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3so8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3sul_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3sz7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3t1s_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3t3j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3t3k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3t8r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tb7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tip_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tow_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tp3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tss_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tsv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3tyj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3uaf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3uc9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3uh8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3umf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3us6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3uv9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3v1a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3v1q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3v46_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3v4g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vbc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vdj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vfi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vlg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vp7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vqf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vvv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3vzh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3w56_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3w6r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3w90_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3wfv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3wi0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3wvt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3wx4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zc8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zhi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zii_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zk0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zsl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zv8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zy1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/3zzp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4a02_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4acj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ae7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4aem_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4af2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4agh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4agk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4apv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4b9i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4bkg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4bmw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4bou_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4bxp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4chd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4che_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4crh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4cu2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4cvd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4cxi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4cya_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4d8o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ddp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4dfi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4dot_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4e1q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4e2u_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4e5r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4e6s_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4e9e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ef5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4el6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4eo0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4evm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4f25_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4f3j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4f59_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4f8a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fei_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fhq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fhr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fi5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fit_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4fqa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g08_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g1j_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g2e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g3o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g4f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4g78_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ga2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gco_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gei_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ggr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ghq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gmq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gqm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gqw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4gs3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4h86_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4h9j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hed_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hfl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hn7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hqa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hrs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hs2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4htj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4hwn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4i2t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4i6x_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4icw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4il7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ipc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ipd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4irg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4iys_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4j5q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4j8y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4jkz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4jmi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4jmp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4jox_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4jqf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4k48_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4k59_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4k7e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4kdz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4kef_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4kei_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4kmc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4l1h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4l5q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4l8l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4l9e_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ldm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4leu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4lhf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4lj1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4lso_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ltt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4m4z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4m90_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4m9k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4m9m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4m9o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4me2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mgs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mid_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mjj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mno_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mo0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mq3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4mz2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4n1d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4n1l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4n6l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4n6t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4n77_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4nfb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ni6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4njp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4nng_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4npn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4nuu_C.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4nux_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4nxp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4o6g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4o7q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4o8b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4o9l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4od6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ohr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4oix_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4osn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4oun_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ouq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4oxp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ozk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ozs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4p09_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4p0l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4pa1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4poy_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4pqd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4pqz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4pti_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4q2q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4q2s_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4q6l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4q7k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qaj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qb0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qb4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qcj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qft_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4quc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4qxl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4r0b_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4reh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4rnt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4rsv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ruv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4rwh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4rwu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4rza_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4tlp_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4tr5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ttl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4u3h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4u3k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4umg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4umi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4uos_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4uyi_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4w8g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4w98_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wdc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wfw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wny_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wp6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wt3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4wxt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4x1m_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4xof_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4xpk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4xy6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4y2f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4y2k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ykd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4yte_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4ytk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4yud_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4yvo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4yx8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4z3i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4z85_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zai_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zbh_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zc3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zct_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zhw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zmk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zot_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zou_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zqa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zqv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/4zsb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5aps_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5apz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5arm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5b0g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5b1n_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5bvl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5c3t_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5c8o_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5c9y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5cdk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5csb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5cwj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5cwk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5d6v_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5d9r_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dbl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dfg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dfk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dma_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dre_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5dym_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5e0z_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5e10_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5e11_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5e1l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5e1y_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eb9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ee2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eep_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ef9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5efr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5efx_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eha_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eid_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eiq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eqz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5eup_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5evg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ewr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5f6a_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5f70_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5fd9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5fdb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ffa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ffb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5fwb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5fx0_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5fzs_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5g51_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5gkb_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5go1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5gua_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5h98_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5h9k_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ha8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hdw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hfd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hfq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hih_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hp7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hrj_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hrz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hu4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hwf_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5hy6_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5i41_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5i4c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5i7q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ilu_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ilv_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5iox_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5is1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ix3_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5j08_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5j0i_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5jak_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ji7_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5jnr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5jrt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5jw8_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5k1g_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5k2q_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ka5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5klc_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5kug_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5kux_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5kvk_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5kvr_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5l33_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5lnn_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5loz_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5ly5_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5lz1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5m1f_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mdt_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mec_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mix_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mjw_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mk2_C.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5moa_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5mr1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5n7h_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5nh1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5njm_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5sv2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5t5d_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5tdq_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5te9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5tja_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5to4_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5tvd_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5u2l_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5u64_B.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5uft_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5vgl_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5vh1_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5wf2_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5wf9_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5x5j_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/5y3c_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/6apo_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/6b26_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/6bdg_A.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/fn.pdb nstruct index 1 protocols.jd2.PDBJobInputter: pushed /Users/dcoelho/work/work/official-scaffolds/top7.pdb nstruct index 1 protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB /Users/dcoelho/work/work/official-scaffolds/1a0k_A.pdb core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 696 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.752862 seconds. core.import_pose.import_pose: File '/Users/dcoelho/work/work/official-scaffolds/1a0k_A.pdb' automatically determined to be of type PDB protocols.rosetta_scripts.RosettaScriptsParser: dock_design_filename=motifgrat_sc.xml protocols.rosetta_scripts.RosettaScriptsParser: Variable substitution will occur with the following values: '%%NCrmsd%%'='5'; '%%clash%%'='50'; '%%context%%'='context.pdb'; '%%delta%%'='0:0,0:0,2:0,1:2'; '%%hotspots%%'='1:4:8:10,1:4:6,1:3,2:3:4'; '%%independent%%'='0'; '%%motif%%'='motif.pdb'; '%%rmsd%%'='5'; protocols.rosetta_scripts.RosettaScriptsParser: Substituted script: protocols.rosetta_scripts.RosettaScriptsParser: Generating XML Schema for rosetta_scripts... protocols.rosetta_scripts.RosettaScriptsParser: ...done protocols.rosetta_scripts.RosettaScriptsParser: Initializing schema validator... protocols.rosetta_scripts.RosettaScriptsParser: ...done protocols.rosetta_scripts.RosettaScriptsParser: Validating input script... protocols.rosetta_scripts.RosettaScriptsParser: ...done protocols.rosetta_scripts.RosettaScriptsParser: Parsed script: core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt core.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb protocols.jd2.parser.ScoreFunctionLoader: defined score function "ref15" with weights "ref2015.wts" protocols.simple_filters.DdgFilter: ddg filter with threshold -15 repeats=1 and scorefxn commandline over jump 1extreme_value_removal: 0 and repack 1 protocols.rosetta_scripts.RosettaScriptsParser: Defined filter named "ddg" of type Ddg core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 protocols.simple_filters.BuriedUnsatHbondFilter: WARNING! use_reporter_behavior=true, need to set one behavior to true; will use default report_all_heavy_atom_unsats: protocols.rosetta_scripts.RosettaScriptsParser: Defined filter named "unsat" of type BuriedUnsatHbonds protocols.simple_filters.ShapeComplementarityFilter: Structures with shape complementarity < 0.5, interface area < 0 A^2, median distance > 0 will be filtered. protocols.simple_filters.ShapeComplementarityFilter: Ignoring residue range selection since residues2 is empty. protocols.rosetta_scripts.RosettaScriptsParser: Defined filter named "Sc" of type ShapeComplementarity protocols.motif_grafting.movers.MotifGraftMover: Reading XML parameters protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] No only_allow_if_N_point_match_aa_identity option defined, the default "false" will be used protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] No only_allow_if_C_point_match_aa_identity option defined, the default "false" will be used protocols.motif_grafting.movers.MotifGraftMover: DONE reading XML parmeters core.conformation.Conformation: Found disulfide between residues 11 42 core.conformation.Conformation: current variant for 11 CYS core.conformation.Conformation: current variant for 42 CYS core.conformation.Conformation: current variant for 11 CYD core.conformation.Conformation: current variant for 42 CYD core.conformation.Conformation: [ WARNING ] missing heavyatom: CO on residue LEU:AcetylatedNtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: OP1 on residue LEU:AcetylatedNtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: CP2 on residue LEU:AcetylatedNtermProteinFull 1 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue TYR:CtermProteinFull 10 core.conformation.Conformation: [ WARNING ] missing heavyatom: CO on residue PHE:AcetylatedNtermProteinFull 11 core.conformation.Conformation: [ WARNING ] missing heavyatom: OP1 on residue PHE:AcetylatedNtermProteinFull 11 core.conformation.Conformation: [ WARNING ] missing heavyatom: CP2 on residue PHE:AcetylatedNtermProteinFull 11 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue TYR:CtermProteinFull 16 core.conformation.Conformation: [ WARNING ] missing heavyatom: CO on residue ASN:AcetylatedNtermProteinFull 17 core.conformation.Conformation: [ WARNING ] missing heavyatom: OP1 on residue ASN:AcetylatedNtermProteinFull 17 core.conformation.Conformation: [ WARNING ] missing heavyatom: CP2 on residue ASN:AcetylatedNtermProteinFull 17 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue TYR:CtermProteinFull 19 core.conformation.Conformation: [ WARNING ] missing heavyatom: CO on residue GLU:AcetylatedNtermProteinFull 20 core.conformation.Conformation: [ WARNING ] missing heavyatom: OP1 on residue GLU:AcetylatedNtermProteinFull 20 core.conformation.Conformation: [ WARNING ] missing heavyatom: CP2 on residue GLU:AcetylatedNtermProteinFull 20 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue VAL:CtermProteinFull 25 protocols.motif_grafting.movers.MotifGraftMover: RMSD tolerance settled to: 5 protocols.motif_grafting.movers.MotifGraftMover: N-/C-points RMSD tolerance settled to: 5 protocols.motif_grafting.movers.MotifGraftMover: Clash score cutoff settled to: 50 protocols.motif_grafting.movers.MotifGraftMover: Parsed combinatory size delta for fragment #1 = 0,0 protocols.motif_grafting.movers.MotifGraftMover: Parsed combinatory size delta for fragment #2 = 0,0 protocols.motif_grafting.movers.MotifGraftMover: Parsed combinatory size delta for fragment #3 = 2,0 protocols.motif_grafting.movers.MotifGraftMover: Parsed combinatory size delta for fragment #4 = 1,2 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] No max_fragment_replacement_size defined, assuming that each motif fragment can replace a fragment of any size in the scaffold protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #1 set by default to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #2 set by default to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #3 set by default to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #4 set by default to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 1, for fragment #1 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 4, for fragment #1 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 8, for fragment #1 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 10, for fragment #1 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 1, for fragment #2 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 4, for fragment #2 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 6, for fragment #2 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 1, for fragment #3 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 3, for fragment #3 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 2, for fragment #4 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 3, for fragment #4 protocols.motif_grafting.movers.MotifGraftMover: Parsed hotspot at position: 4, for fragment #4 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] You have enabled raft_only_hotspots_by_sidechain_replacement. Opposed to fragment grafting, this option will just copy the sidechains of the hotspots, not the backbone into the target scaffold. Use this option wisely (i.e. only under the assumption of a very low rmsd). protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] Using Full Back Bone alignment OVERRIDES fragment_replacement_size_delta different to 0:0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #1 FORCED by full_motif_bb_alignment to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #2 FORCED by full_motif_bb_alignment to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #3 FORCED by full_motif_bb_alignment to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: Replacement size delta for fragment #4 FORCED by full_motif_bb_alignment to: 0, 0 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] If the number of matches in a single pose is < nstruct, when all the matches are generated the mover will stop. protocols.motif_grafting.movers.MotifGraftMover: DONE parsing global arguments protocols.rosetta_scripts.RosettaScriptsParser: Defined mover named "motif_grafting" of type MotifGraft protocols.minimization_packing.MinMover: Setting min on jump 1 protocols.minimization_packing.MinMover: Options chi, bb: 1, 0 omega: 1 protocols.rosetta_scripts.RosettaScriptsParser: Defined mover named "rb_min" of type MinMover protocols.rosetta_scripts.ParsedProtocol: ParsedProtocol mover with the following movers and filters protocols.rosetta_scripts.ParsedProtocol: added mover "motif_grafting" with filter "true_filter" protocols.rosetta_scripts.ParsedProtocol: added mover "rb_min" with filter "true_filter" protocols.rosetta_scripts.ParsedProtocol: added mover "NULL_MOVER" with filter "unsat" protocols.rosetta_scripts.ParsedProtocol: added mover "NULL_MOVER" with filter "ddg" protocols.rosetta_scripts.ParsedProtocol: added mover "NULL_MOVER" with filter "Sc" protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy /Users/dcoelho/work/work/official-scaffolds/1a0k_A.pdb protocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER MotifGraft - motif_grafting======================= protocols.motif_grafting.movers.MotifGraftMover: Executing Motif Graft Mover protocols.motif_grafting.movers.MotifGraftMover: Target scaffold size: 130 protocols.motif_grafting.movers.MotifGraftMover: Motif size: 25 protocols.motif_grafting.movers.MotifGraftMover: contextStructure size: 107 protocols.motif_grafting.movers.MotifGraftMover: Target scaffold numChains: 1 protocols.motif_grafting.movers.MotifGraftMover: Motif numChains: 4 protocols.motif_grafting.movers.MotifGraftMover: contextStructure numChains: 1 protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 20 25 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 20 24 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 20 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 21 25 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 21 24 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 17 19 21 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 20 25 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 20 24 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 20 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 21 25 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 21 24 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 18 19 21 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 20 25 protocols.motif_grafting.movers.MotifGraftMover: Using mutation mode for clash test, with the residue: GLY protocols.motif_grafting.movers.MotifGraftMover: In the iteration 13,there are a total of: 1 fragments in the priority queue protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 20 24 protocols.motif_grafting.movers.MotifGraftMover: Using mutation mode for clash test, with the residue: GLY protocols.motif_grafting.movers.MotifGraftMover: In the iteration 14,there are a total of: 2 fragments in the priority queue protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 20 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 21 25 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 21 24 protocols.motif_grafting.movers.MotifGraftMover: Using mutation mode for clash test, with the residue: GLY protocols.motif_grafting.movers.MotifGraftMover: In the iteration 17,there are a total of: 4 fragments in the priority queue protocols.motif_grafting.movers.MotifGraftMover: Fragments combination to be tested: 1 10 11 16 19 19 21 23 protocols.motif_grafting.movers.MotifGraftMover: [ WARNING ] For this scaffold & fragment combination there are not fragments that pass the RMSD test. protocols.motif_grafting.movers.MotifGraftMover: After all the iterations there are a total of: 4 fragments in the priority queue protocols.motif_grafting.movers.MotifGraftMover: Generated 4 results. protocols.motif_grafting.movers.MotifGraftMover: Generating a epigraft structure with overal RMSD score: 4.16317, motif maxRMDS of: 0, and clash score of: 23 core.conformation.Residue: [ WARNING ] Residue connection id changed when creating a new residue at seqpos 23 core.conformation.Residue: [ WARNING ] ResConnID info stored on the connected residue (residue 24) is now out of date! core.conformation.Residue: [ WARNING ] Connection atom name (in src): C Segmentation fault: 11