-database /g/sbgrid/programs/x86_64-linux/rosetta/2017.36.59679/main/database
-s chk1_2ydimodel_2phkmuta_LGRILSLT.pdb
-extra_res_fa ATP.params
-movemap movemap
-ex1
-ex2aro
-use_input_sc
-flexpep_score_only
-ignore_unrecognized_res
-flexpep_prepack