# For an 8mer macrocycle, 100,000 samples is perhaps two to four times the minimum needed:
-nstruct 100000


-cyclic_peptide:link_all_cys_with_paraBBMB true
-extra_res_fa crosslinker/1.4_bisbromomethylbenzene.params

# The sequence file:
-sequence_file inputs/seq.txt
 
# Options configuring the kinematic closure step and relaxation steps:
-cyclic_peptide:genkic_closure_attempts 1000
-cyclic_peptide:genkic_min_solution_count 1
-cyclic_peptide:min_genkic_hbonds 1
-cyclic_peptide:min_final_hbonds 1
-cyclic_peptide:fast_relax_rounds 20
-ex1
-ex2
-extrachi_cutoff 5
-symmetric_gly_tables true
-score:weights ref2015.wts