protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 62 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1482 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1658912 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1482 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1658912 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1482 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1658912 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 9.53674e-07 Deriv= -20.5998 Finite Diff= -0.641131 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.07978e-06 Deriv= -49.9242 Finite Diff= -2.56497 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#23 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 63 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1581 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1682600 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1581 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1682600 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1581 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1682600 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -278.203 Finite Diff= -20.7299 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 4.57414e-07 Deriv= -278.203 Finite Diff= -20.7267 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 64 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1569 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1607172 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1569 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1605700 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1569 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1605700 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 9.53674e-09 Deriv= -12849.4 Finite Diff= 16.6248 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.9849e-08 Deriv= -147742 Finite Diff= 78.6366 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#8 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 65 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1456 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1512616 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1456 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1512616 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1456 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1512616 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 5.96046e-10 Deriv= -85.887 Finite Diff= -1.32103 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 7.54806e-07 Deriv= -102.167 Finite Diff= 1.36721 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#16 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 66 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1574 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1714908 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1574 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1714908 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1574 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1714908 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 9.53674e-09 Deriv= -51.9772 Finite Diff= -1.93342 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.63883e-06 Deriv= -21.6726 Finite Diff= -1.00276 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#13 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 67 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1640 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1922364 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1640 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1922364 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1640 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1922364 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.98023e-08 Deriv= -12011.5 Finite Diff= 614.705 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.94337e-08 Deriv= -154124 Finite Diff= 2122.35 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#8 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 68 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1612 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1807452 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1612 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1807452 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1612 rotamers at 60 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1807452 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.90735e-08 Deriv= -36.005 Finite Diff= 0.173831 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 69 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1675 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1848852 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1675 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1848852 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.354836 Finite Diff= 0.554359 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1675 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1848852 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 7.45058e-11 Deriv= -54.2457 Finite Diff= 0.662231 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 70 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1266 rotamers at 58 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1256056 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1266 rotamers at 58 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1252136 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 4.76837e-07 Deriv= -2.81616 Finite Diff= 0.29852 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1266 rotamers at 58 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1252672 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 71 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1213 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1192272 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1213 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1192272 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1213 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1192272 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 72 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1159 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1061120 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1159 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1061120 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1159 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1061120 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.52588e-07 Deriv= -17.955 Finite Diff= 1.84155 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 7.6127e-07 Deriv= -100.439 Finite Diff= 5.35721 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#10 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 73 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1320 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1272232 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1320 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1272232 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1320 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1272232 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 4.76837e-07 Deriv= -6.65518 Finite Diff= -0.566515 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 74 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1158 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1024864 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1158 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1024864 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1158 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1024864 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.796139 Finite Diff= 0.152551 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 75 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1107 rotamers at 52 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1054660 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1107 rotamers at 52 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1054660 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1107 rotamers at 52 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1054660 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 6.10352e-07 Deriv= -5.40955 Finite Diff= 0.668262 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 76 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1269 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1170200 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1269 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1170200 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.104635 Finite Diff= 0.187926 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1269 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1170200 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 9.53674e-07 Deriv= -2.35378 Finite Diff= -0.00784779 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.12975e-06 Deriv= -12.8328 Finite Diff= -0.31963 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#15 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 77 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1241 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1194736 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1241 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1194736 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1241 rotamers at 56 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1194736 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.2207e-06 Deriv= -1.46114 Finite Diff= -0.073196 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 78 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1084 rotamers at 53 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1004216 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1084 rotamers at 53 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1004216 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.0537612 Finite Diff= 0.00529289 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1084 rotamers at 53 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1004216 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 79 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1155 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1052132 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1155 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1052132 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1155 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1052132 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 80 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1375 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1299288 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1375 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1299288 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.102788 Finite Diff= 0.115404 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1375 rotamers at 55 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1299288 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -10.9022 Finite Diff= 0.709059 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.20465e-06 Deriv= -40.1106 Finite Diff= -0.861482 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#6 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 81 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1362 rotamers at 62 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1375660 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1362 rotamers at 62 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1375660 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.210953 Finite Diff= 0.270317 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1362 rotamers at 62 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1376060 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -1.84264 Finite Diff= -0.152973 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.65415e-06 Deriv= -21.2732 Finite Diff= -1.41184 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#25 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 82 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1394 rotamers at 57 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1473184 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1394 rotamers at 57 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1473184 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1394 rotamers at 57 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1473184 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 83 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1323 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1316264 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1323 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1316264 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.0977859 Finite Diff= 0.308417 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1323 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1316264 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 84 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1390 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1401332 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1390 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1401332 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1390 rotamers at 61 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1400820 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.81899e-12 Deriv= -2790.12 Finite Diff= 637.938 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.32469e-08 Deriv= -107708 Finite Diff= -857.562 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#35 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 85 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1140 rotamers at 54 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1178932 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1140 rotamers at 54 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1178932 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1140 rotamers at 54 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1178932 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 86 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1332 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1349908 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1332 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1349908 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1332 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1349420 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 87 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1771 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1997984 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1771 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1997984 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.157209 Finite Diff= 0.108249 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1771 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1997984 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 88 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1665 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1800520 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1665 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1800520 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.372106 Finite Diff= -0.00667274 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1665 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1800520 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -35.8191 Finite Diff= 9.35975 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.27477e-06 Deriv= -35.8191 Finite Diff= 9.35587 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 89 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1629 rotamers at 69 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1744304 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1629 rotamers at 69 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1744304 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1629 rotamers at 69 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1744304 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 90 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1762 rotamers at 78 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1980952 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1762 rotamers at 78 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1978096 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -11.2065 Finite Diff= 0.692336 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1762 rotamers at 78 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1979720 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -2140.28 Finite Diff= -13.4607 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 4.79408e-08 Deriv= -25326.2 Finite Diff= -442.77 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#11 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 91 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1740 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1954852 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1740 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1954852 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1740 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1960004 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.52588e-07 Deriv= -80.629 Finite Diff= -3.50968 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.36219e-07 Deriv= -1043.16 Finite Diff= -13.377 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#14 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 92 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1719 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1909712 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1719 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1909712 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.0807124 Finite Diff= 0.267189 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1719 rotamers at 76 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1910112 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.91038e-11 Deriv= -28.7346 Finite Diff= 8.05859 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.65479e-07 Deriv= -825.884 Finite Diff= -3.60624 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#42 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 93 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1818 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2106268 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1818 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2102816 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -0.385875 Finite Diff= 1.39208 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1818 rotamers at 73 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2102816 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 94 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1663 rotamers at 68 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1846220 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1663 rotamers at 68 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1846220 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.185163 Finite Diff= 0.116692 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1663 rotamers at 68 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1846220 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 95 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1805 rotamers at 65 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2109340 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1805 rotamers at 65 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2108892 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.541691 Finite Diff= 1.01057 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1805 rotamers at 65 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 2109340 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 2.91038e-13 Deriv= -3677.28 Finite Diff= 464.844 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.80687e-07 Deriv= -401.647 Finite Diff= 1.60715 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#43 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 96 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1700 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1976440 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1700 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1975848 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -1.59852 Finite Diff= 1.66123 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1700 rotamers at 63 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1992116 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 4.76837e-09 Deriv= -1.21948e+06 Finite Diff= 12418.1 core.optimization.LineMinimizer: (2) [ ERROR ] Inaccurate G! step= 1.38454e-08 Deriv= -303648 Finite Diff= -510.077 core.optimization.Minimizer: (2) Line search failed even after resetting Hessian; aborting at iter#7 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (2) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 97 protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1595 rotamers at 67 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1751832 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (2) Packer task: initialize from command line() core.pack.pack_rotamers: (2) built 1595 rotamers at 67 positions. core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1750920 bytes protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (2) Packer task: initialize from command line() core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!