#!/bin/bash -l
#$ -S /bin/bash
#$ -l h_rt=0:30:0
#$ -l mem=2G
#$ -N name_20141110_HC_minirosetta_20141110.1
#$ -wd /home/ucbechz/Scratch/20141110_HC_minirosetta/20141110.1

module unload compilers/intel/11.1/072
module unload mpi/qlogic/1.2.7/intel
module unload mkl/10.2.5/035
module load compilers/gnu/4.6.3
module load python/2.6.9/gnu.4.6.3
module load rosetta/2014.34.57213

cd $TMPDIR

minirosetta.linuxgccrelease @ $HOME/Scratch/20141110_HC_minirosetta/20141110.1/comparative_model_HC.options > comparative_model_HC.log

# This copies all your results from TMPDIR back into Scratch. You can put them wherever you want in Scratch.
tar zcvf $HOME/Scratch/20141110_HC_minirosetta/20141110.1/files_from_job_$JOB_ID.tar.gz $TMPDIR