/home/ajkal/Rosetta/main/source/bin/partial_thread.linuxgccrelease -database /home/ajkal/Rosetta/main/database -in:file:fasta LeishTubulin1.fasta -in:file:alignment fixaln.grishin -in:file:template_pdb template.pdb -in:file:extra_res_path ./extra_res -score:extra_improper_file tors/nt.fa.tors -auto_setup_metals true