core::pack::task::operation::ReadResfileAndObeyLengthEvents Class Reference

written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose's observer cache for this to work properly More...

#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::ReadResfileAndObeyLengthEvents:

Public Types
typedef ReadResfile	parent
Public Types inherited from core::pack::task::operation::ReadResfile
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	ReadResfileAndObeyLengthEvents ()
	BEGIN ReadResfileAndObeyLengthEvents. More...
	ReadResfileAndObeyLengthEvents (std::string const &)
	~ReadResfileAndObeyLengthEvents ()
virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (pose::Pose const &pose, PackerTask &ptask) const
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to load parameters and properties. More...
std::list< ResfileCommandCOP > const &	resfile_commands (Size const resfile_seqpos, ResfileContents const &contents, PackerTask const &ptask) const
Public Member Functions inherited from core::pack::task::operation::ReadResfile
	ReadResfile ()
	BEGIN ReadResfile. More...
	ReadResfile (std::string const &)
virtual	~ReadResfile ()
void	filename (std::string const &filename)
void	default_filename ()
	queries options system for resfile name More...
std::string const &	filename () const
virtual void	parse_def (utility::lua::LuaObject const &def)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()

Private Attributes
bool	apply_default_commands_to_inserts_

Detailed Description

written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose's observer cache for this to work properly

Member Typedef Documentation

typedef ReadResfile core::pack::task::operation::ReadResfileAndObeyLengthEvents::parent

Constructor & Destructor Documentation

core::pack::task::operation::ReadResfileAndObeyLengthEvents::ReadResfileAndObeyLengthEvents

(

)

BEGIN ReadResfileAndObeyLengthEvents.

Referenced by clone().

core::pack::task::operation::ReadResfileAndObeyLengthEvents::ReadResfileAndObeyLengthEvents

(

std::string const &

filename

)

core::pack::task::operation::ReadResfileAndObeyLengthEvents::~ReadResfileAndObeyLengthEvents

(

)

Member Function Documentation

void core::pack::task::operation::ReadResfileAndObeyLengthEvents::apply ( pose::Pose const &  pose, PackerTask &  ptask  ) const

virtual

IMPORTANT: only use this if any length changes are not reflected in the pose's pdb info, such as seems to be the case after vlb not quite certain on the ideal approach yet. it's prolly best to parse the resfile, and then apply the ResfileCommands to the remapped residues. this necessitates getting the ResfileContents. the code under 2. here is some duplication of ResfileReader::parse_resfile/parse_resfile_string, ideally this and ResfileReader should be refactored a bit

Reimplemented from core::pack::task::operation::ReadResfile.

References core::pack::task::operation::ReadResfile::apply(), apply_default_commands_to_inserts_, core::id::combine_sequence_mappings(), core::pack::task::operation::ReadResfile::filename(), core::pose::datacache::CacheableObserverType::LENGTH_EVENT_COLLECTOR, core::pose::Pose::observer_cache(), resfile_commands(), and core::pack::task::PackerTask::total_residue().

Referenced by protocols::enzdes::DetectProteinLigandInterface::apply().

TaskOperationOP core::pack::task::operation::ReadResfileAndObeyLengthEvents::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Reimplemented from core::pack::task::operation::ReadResfile.

References ReadResfileAndObeyLengthEvents().

void core::pack::task::operation::ReadResfileAndObeyLengthEvents::parse_tag ( TagCOP  tag, DataMap &    )

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::ReadResfile.

References apply_default_commands_to_inserts_, and core::pack::task::operation::ReadResfile::parse_tag().

std::list< ResfileCommandCOP > const & core::pack::task::operation::ReadResfileAndObeyLengthEvents::resfile_commands	(	core::Size const	resfile_seqpos,
		ResfileContents const &	contents,
		PackerTask const &	ptask
	)		const

note: this function will return default commands for resfile_seqpos == 0

References core::pack::task::ResfileContents::commands_for_residue(), core::pack::task::ResfileContents::default_commands(), core::pack::task::ResfileContents::specialized_commands_exist_for_residue(), and core::pack::task::PackerTask::total_residue().

Referenced by apply().

Member Data Documentation

bool core::pack::task::operation::ReadResfileAndObeyLengthEvents::apply_default_commands_to_inserts_

private

Referenced by apply(), and parse_tag().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/TaskOperations.hh
• src/core/pack/task/operation/TaskOperations.cc