protocols::loops::PoseNumberedLoopFileReader Class Reference

#include <LoopsFileIO.hh>

Public Member Functions
	PoseNumberedLoopFileReader ()
SerializedLoopList	read_pose_numbered_loops_file (std::istream &is, std::string const &filename, bool strict_looprelax_checks=true)
void	set_linecount_offset (core::Size)
	if the input stream has had some number of lines already removed from it, indicate how many. More...
void	hijack_loop_reading_code_set_loop_line_begin_token (std::string const &token)
	For code that relys on reading loop-file-formatted ranges if residues but which really ought to use. More...

Private Attributes
std::string	loop_line_begin_token_
core::Size	linecount_offset_

Detailed Description

This is the main legacy loop-reading function, which will read the pose-numbered file. This functionality is used by a great many number of places often having nothing to do with representing a loop, so it will persist.

Constructor & Destructor Documentation

protocols::loops::PoseNumberedLoopFileReader::PoseNumberedLoopFileReader

(

)

Member Function Documentation

void protocols::loops::PoseNumberedLoopFileReader::hijack_loop_reading_code_set_loop_line_begin_token

(

std::string const &

token

)

For code that relys on reading loop-file-formatted ranges if residues but which really ought to use.

References loop_line_begin_token_.

Referenced by protocols::topology_broker::ConstraintClaimer::add_constraints(), protocols::simple_filters::ChiWellRmsdEvaluatorCreator::add_evaluators(), protocols::simple_filters::RmsdEvaluatorCreator::add_evaluators(), protocols::simple_filters::NativeEvaluatorCreator::add_evaluators(), protocols::simple_filters::ExtraScoreEvaluatorCreator::add_evaluators(), protocols::abinitio::abscript::ConstraintPreparer::combine_exclude_file(), protocols::toolbox::DecoySetEvaluation::create_dist_constraints_median(), protocols::scoring::ResidualDipolarCouplingRigidSegments::read_RDC_segment_file(), protocols::abinitio::abscript::read_rigid_core(), protocols::topology_broker::FibrilModelingClaimer::read_tag(), protocols::topology_broker::CoordConstraintClaimer::read_tag(), protocols::topology_broker::RigidChunkClaimer::read_tag(), protocols::topology_broker::FragmentClaimer::read_tag(), and protocols::abinitio::IterativeBase::restore_status().

SerializedLoopList protocols::loops::PoseNumberedLoopFileReader::read_pose_numbered_loops_file	(	std::istream &	is,
		std::string const &	filename,
		bool	strict_looprelax_checks = true
	)

References protocols::loops::SerializedLoop::cut, protocols::loops::SerializedLoop::extended, linecount_offset_, loop_line_begin_token_, protocols::loops::SerializedLoop::skip_rate, core::io::pdb::split(), protocols::loops::SerializedLoop::start, protocols::loops::SerializedLoop::stop, protocols::loops::tr(), and protocols::loops::validate_loop_start_stop().

Referenced by protocols::topology_broker::ConstraintClaimer::add_constraints(), protocols::simple_filters::ChiWellRmsdEvaluatorCreator::add_evaluators(), protocols::simple_filters::NativeEvaluatorCreator::add_evaluators(), protocols::simple_filters::RmsdEvaluatorCreator::add_evaluators(), protocols::simple_filters::ExtraScoreEvaluatorCreator::add_evaluators(), protocols::abinitio::abscript::ConstraintPreparer::combine_exclude_file(), protocols::toolbox::DecoySetEvaluation::create_dist_constraints_median(), protocols::loops::Loops::read_loop_file(), protocols::loops::LoopsFileIO::read_loop_file_stream(), protocols::scoring::ResidualDipolarCouplingRigidSegments::read_RDC_segment_file(), protocols::abinitio::abscript::read_rigid_core(), protocols::topology_broker::AsymFoldandDockClaimer::read_tag(), protocols::topology_broker::FibrilModelingClaimer::read_tag(), protocols::topology_broker::CoordConstraintClaimer::read_tag(), protocols::topology_broker::RigidChunkClaimer::read_tag(), protocols::topology_broker::FragmentClaimer::read_tag(), and protocols::abinitio::IterativeBase::restore_status().

void protocols::loops::PoseNumberedLoopFileReader::set_linecount_offset

(

core::Size

setting

)

if the input stream has had some number of lines already removed from it, indicate how many.

References linecount_offset_.

Referenced by protocols::loops::LoopsFileIO::read_loop_file_stream().

Member Data Documentation

core::Size protocols::loops::PoseNumberedLoopFileReader::linecount_offset_

private

Referenced by read_pose_numbered_loops_file(), and set_linecount_offset().

std::string protocols::loops::PoseNumberedLoopFileReader::loop_line_begin_token_

private

Referenced by hijack_loop_reading_code_set_loop_line_begin_token(), and read_pose_numbered_loops_file().

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The documentation for this class was generated from the following files:

• src/protocols/loops/LoopsFileIO.hh
• src/protocols/loops/LoopsFileIO.cc