core::scoring::func::FadeFunc Class Reference

#include <FadeFunc.hh>

Inheritance diagram for core::scoring::func::FadeFunc:

Public Member Functions
	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth, Real const well_offset)
	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth)
	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone)
FuncOP	clone () const
Real	func (Real const x) const
	Returns a value representing this function evaluated at a given point. More...
Real	dfunc (Real const x) const
	Returns a value representing the derivative of this function evaluated at a given point. More...
void	read_data (std::istream &in)
	initialize this Func from the given std::istream. More...
void	show_definition (std::ostream &out) const
	shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More...
Real	cutoff_upper () const
Real	cutoff_lower () const
Real	fade_zone () const
void	cutoff_upper (Real x)
void	cutoff_lower (Real x)
void	fade_zone (Real x)
Size	show_violations (std::ostream &out, Real x, Size verbose_level, core::Real threshold=1) const
	show some sort of stringified representation of the violations for this constraint. More...
Public Member Functions inherited from core::scoring::func::Func
virtual	~Func ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
virtual Real	estimate_dfunc (Real const r) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...
virtual Real	estimate_dfunc (Real const r, Real const h) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...
virtual void	show (std::ostream &out) const
	Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...

Private Attributes
Real	cutoff_lower_
Real	cutoff_upper_
Real	fade_zone_
Real	well_depth_
Real	well_offset_

Constructor & Destructor Documentation

core::scoring::func::FadeFunc::FadeFunc ( Real const  cutoff_lower, Real const  cutoff_upper, Real const  fade_zone, Real const  well_depth, Real const  well_offset  )

inline

Referenced by clone().

core::scoring::func::FadeFunc::FadeFunc ( Real const  cutoff_lower, Real const  cutoff_upper, Real const  fade_zone, Real const  well_depth  )

inline

core::scoring::func::FadeFunc::FadeFunc ( Real const  cutoff_lower, Real const  cutoff_upper, Real const  fade_zone  )

inline

Member Function Documentation

FuncOP core::scoring::func::FadeFunc::clone ( ) const

virtual

Implements core::scoring::func::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, FadeFunc(), well_depth_, and well_offset_.

Real core::scoring::func::FadeFunc::cutoff_lower ( ) const

inline

References cutoff_lower_.

void core::scoring::func::FadeFunc::cutoff_lower ( Real  x )

inline

References cutoff_lower_.

Real core::scoring::func::FadeFunc::cutoff_upper ( ) const

inline

References cutoff_upper_.

void core::scoring::func::FadeFunc::cutoff_upper ( Real  x )

inline

References cutoff_upper_.

Real core::scoring::func::FadeFunc::dfunc ( Real const  const ) const

virtual

Returns a value representing the derivative of this function evaluated at a given point.

Implements core::scoring::func::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, and well_depth_.

Real core::scoring::func::FadeFunc::fade_zone ( ) const

inline

References fade_zone_.

void core::scoring::func::FadeFunc::fade_zone ( Real  x )

inline

References fade_zone_.

Real core::scoring::func::FadeFunc::func ( Real const  const ) const

virtual

Returns a value representing this function evaluated at a given point.

Implements core::scoring::func::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

void core::scoring::func::FadeFunc::read_data ( std::istream &  )

virtual

initialize this Func from the given std::istream.

Reimplemented from core::scoring::func::Func.

References core::pack::dunbrack::c, cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

void core::scoring::func::FadeFunc::show_definition ( std::ostream &  out ) const

virtual

shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.

Reimplemented from core::scoring::func::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

Size core::scoring::func::FadeFunc::show_violations ( std::ostream &  out, Real  r, Size  verbose_level, core::Real  threshold = 1  ) const

virtual

show some sort of stringified representation of the violations for this constraint.

Reimplemented from core::scoring::func::Func.

References cutoff_upper_, and core::scoring::func::Func::show_violations().

Member Data Documentation

Real core::scoring::func::FadeFunc::cutoff_lower_

private

Referenced by clone(), cutoff_lower(), dfunc(), func(), read_data(), and show_definition().

Real core::scoring::func::FadeFunc::cutoff_upper_

private

Referenced by clone(), cutoff_upper(), dfunc(), func(), read_data(), show_definition(), and show_violations().

Real core::scoring::func::FadeFunc::fade_zone_

private

Referenced by clone(), dfunc(), fade_zone(), func(), read_data(), and show_definition().

Real core::scoring::func::FadeFunc::well_depth_

private

Referenced by clone(), dfunc(), func(), read_data(), and show_definition().

Real core::scoring::func::FadeFunc::well_offset_

private

Referenced by clone(), func(), read_data(), and show_definition().

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The documentation for this class was generated from the following files:

• src/core/scoring/func/FadeFunc.hh
• src/core/scoring/func/FadeFunc.cc