protocols::match::upstream::ProteinBackboneBuildPoint Class Reference

#include <OriginalScaffoldBuildPoint.hh>

Inheritance diagram for protocols::match::upstream::ProteinBackboneBuildPoint:

Public Types
typedef core::Real	Real
typedef core::Vector	Vector
typedef ScaffoldBuildPoint	parent
Public Types inherited from protocols::match::upstream::ScaffoldBuildPoint
typedef core::Size	Size

Public Member Functions
	ProteinBackboneBuildPoint ()
	ProteinBackboneBuildPoint (Size index)
virtual	~ProteinBackboneBuildPoint ()
Real	phi () const
Real	psi () const
Vector	N_pos () const
Vector	CA_pos () const
Vector	C_pos () const
Vector	O_pos () const
Vector	H_pos () const
Vector	HA_pos () const
void	phi (Real setting)
	Setters. More...
void	psi (Real setting)
void	N_pos (Vector const &setting)
void	CA_pos (Vector const &setting)
void	C_pos (Vector const &setting)
void	O_pos (Vector const &setting)
void	H_pos (Vector const &setting)
void	HA_pos (Vector const &setting)
Public Member Functions inherited from protocols::match::upstream::ScaffoldBuildPoint
	ScaffoldBuildPoint ()
	ScaffoldBuildPoint (Size index)
virtual	~ScaffoldBuildPoint ()
virtual bool	compatible (ScaffoldBuildPoint const &, bool first_dispatch=true) const
virtual bool	compatible (OriginalBackboneBuildPoint const &, bool first_dispatch=true) const
virtual Size	original_insertion_point () const =0
	Inform the calling function where in the original scaffold this build point should be inserted. If the output pose from a matching has a different number of residues than the original scaffold, then the calling function must determine where the hit from this build point should be inserted. More...
virtual void	insert (Size seqpos_to_insert_at, Hit const &hit, UpstreamBuilderCOP builder, core::pose::Pose &pose) const =0
Size	index () const
void	index (Size setting)

Private Attributes
Real	phi_
Real	psi_
Vector	N_pos_
Vector	CA_pos_
Vector	C_pos_
Vector	O_pos_
Vector	H_pos_
Vector	HA_pos_

Member Typedef Documentation

typedef ScaffoldBuildPoint protocols::match::upstream::ProteinBackboneBuildPoint::parent

typedef core::Real protocols::match::upstream::ProteinBackboneBuildPoint::Real

typedef core::Vector protocols::match::upstream::ProteinBackboneBuildPoint::Vector

Constructor & Destructor Documentation

protocols::match::upstream::ProteinBackboneBuildPoint::ProteinBackboneBuildPoint

(

)

Initialize the coordinates to bogus yet numically palpable values. If someone should accidentally try to construct a coordinate frame from CA pointing toward CB reading from uninitialized variables, they wouldn't hit a divide-by-zero error that might occur if CA and C were both at the origin.

protocols::match::upstream::ProteinBackboneBuildPoint::ProteinBackboneBuildPoint

(

Size

index

)

protocols::match::upstream::ProteinBackboneBuildPoint::~ProteinBackboneBuildPoint ( )

virtual

Member Function Documentation

Vector protocols::match::upstream::ProteinBackboneBuildPoint::C_pos ( ) const

inline

References C_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::C_pos

(

Vector const &

setting

)

References C_pos_.

Vector protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos ( ) const

inline

References CA_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos

(

Vector const &

setting

)

References CA_pos_.

Vector protocols::match::upstream::ProteinBackboneBuildPoint::H_pos ( ) const

inline

References H_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::H_pos

(

Vector const &

setting

)

References H_pos_.

Vector protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos ( ) const

inline

References HA_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos

(

Vector const &

setting

)

References HA_pos_.

Vector protocols::match::upstream::ProteinBackboneBuildPoint::N_pos ( ) const

inline

References N_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::N_pos

(

Vector const &

setting

)

References N_pos_.

Vector protocols::match::upstream::ProteinBackboneBuildPoint::O_pos ( ) const

inline

References O_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::ProteinUpstreamBuilder::initialize_rescoords().

void protocols::match::upstream::ProteinBackboneBuildPoint::O_pos

(

Vector const &

setting

)

References O_pos_.

Real protocols::match::upstream::ProteinBackboneBuildPoint::phi ( ) const

inline

References phi_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::build(), protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::DunbrackSCSampler::samples().

void protocols::match::upstream::ProteinBackboneBuildPoint::phi

(

Real

setting

)

Setters.

References phi_.

Real protocols::match::upstream::ProteinBackboneBuildPoint::psi ( ) const

inline

References psi_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::build(), protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue(), and protocols::match::upstream::DunbrackSCSampler::samples().

void protocols::match::upstream::ProteinBackboneBuildPoint::psi

(

Real

setting

)

References psi_.

Member Data Documentation

Vector protocols::match::upstream::ProteinBackboneBuildPoint::C_pos_

private

Referenced by C_pos().

Vector protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos_

private

Referenced by CA_pos().

Vector protocols::match::upstream::ProteinBackboneBuildPoint::H_pos_

private

Referenced by H_pos().

Vector protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos_

private

Referenced by HA_pos().

Vector protocols::match::upstream::ProteinBackboneBuildPoint::N_pos_

private

Referenced by N_pos().

Vector protocols::match::upstream::ProteinBackboneBuildPoint::O_pos_

private

Referenced by O_pos().

Real protocols::match::upstream::ProteinBackboneBuildPoint::phi_

private

Referenced by phi().

Real protocols::match::upstream::ProteinBackboneBuildPoint::psi_

private

Referenced by psi().

---

The documentation for this class was generated from the following files:

• src/protocols/match/upstream/OriginalScaffoldBuildPoint.hh
• src/protocols/match/upstream/OriginalScaffoldBuildPoint.cc