protocols::frag_picker::SidechainContactDistCutoff Class Reference

defines sidechain contact distance cutoffs. More...

#include <SidechainContactDistCutoff.hh>

Inheritance diagram for protocols::frag_picker::SidechainContactDistCutoff:

Public Member Functions
	SidechainContactDistCutoff ()
	SidechainContactDistCutoff (Real scale_factor)
virtual	~SidechainContactDistCutoff ()
Real	get_cutoff (char aa_i, char aa_j)
Real	get_cutoff_squared (char aa_i, char aa_j)
Real	scale_factor ()

Private Member Functions
void	initialize ()

Private Attributes
utility::vector1< char >	aa_map_
std::map< char, Size >	aa_to_index_map_
utility::vector1 < utility::vector1< Real > >	cutoff_
utility::vector1 < utility::vector1< Real > >	cutoff_squared_
Real	scale_factor_

Detailed Description

defines sidechain contact distance cutoffs.

provides amino acid pair specific distance cutoffs.

Constructor & Destructor Documentation

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

)

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

Real

scale_factor

)

protocols::frag_picker::SidechainContactDistCutoff::~SidechainContactDistCutoff ( )

virtual

Member Function Documentation

Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff	(	char	aa_i,
		char	aa_j
	)

Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff_squared	(	char	aa_i,
		char	aa_j
	)

void protocols::frag_picker::SidechainContactDistCutoff::initialize ( )

private

References core::chemical::aa_from_name(), core::chemical::oneletter_code_from_aa(), and protocols::frag_picker::TR().

Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor

(

)

Member Data Documentation

utility::vector1<char> protocols::frag_picker::SidechainContactDistCutoff::aa_map_

private

std::map<char,Size> protocols::frag_picker::SidechainContactDistCutoff::aa_to_index_map_

private

utility::vector1<utility::vector1<Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_

private

utility::vector1<utility::vector1<Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_squared_

private

Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor_

private

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/SidechainContactDistCutoff.hh
• src/protocols/frag_picker/SidechainContactDistCutoff.cc