#include <IntraRepeatContactFilter.hh>

Inheritance diagram for protocols::simple_filters::IntraRepeatContactFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef std::string	String

typedef utility::tag::TagCOP	TagCOP

typedef protocols::filters::Filters_map	Filters_map

typedef basic::datacache::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	IntraRepeatContactFilter ()

	IntraRepeatContactFilter (IntraRepeatContactFilter const &rval)

virtual	~IntraRepeatContactFilter ()

virtual filters::FilterOP	clone () const

virtual filters::FilterOP	fresh_instance () const

void	filtered_value (Real const &value)

virtual std::string	name () const

virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...

Real	compute (Pose const &pose) const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filtered_value_

Size	numbRepeats_

Size	sequenceSep_

Real	distThresh_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::simple_filters::IntraRepeatContactFilter::DataMap

typedef protocols::filters::Filter protocols::simple_filters::IntraRepeatContactFilter::Filter

typedef protocols::filters::FilterOP protocols::simple_filters::IntraRepeatContactFilter::FilterOP

typedef protocols::filters::Filters_map protocols::simple_filters::IntraRepeatContactFilter::Filters_map

typedef protocols::moves::Movers_map protocols::simple_filters::IntraRepeatContactFilter::Movers_map

typedef core::pose::Pose protocols::simple_filters::IntraRepeatContactFilter::Pose

typedef core::Real protocols::simple_filters::IntraRepeatContactFilter::Real

typedef std::string protocols::simple_filters::IntraRepeatContactFilter::String

typedef protocols::filters::Filter protocols::simple_filters::IntraRepeatContactFilter::Super

typedef utility::tag::TagCOP protocols::simple_filters::IntraRepeatContactFilter::TagCOP

Constructor & Destructor Documentation

protocols::simple_filters::IntraRepeatContactFilter::IntraRepeatContactFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::IntraRepeatContactFilter::IntraRepeatContactFilter ( IntraRepeatContactFilter const & rval )

virtual protocols::simple_filters::IntraRepeatContactFilter::~IntraRepeatContactFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::simple_filters::IntraRepeatContactFilter::apply ( Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filtered_value_, and protocols::simple_filters::tr().

virtual filters::FilterOP protocols::simple_filters::IntraRepeatContactFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References IntraRepeatContactFilter().

IntraRepeatContactFilter::Real protocols::simple_filters::IntraRepeatContactFilter::compute ( Pose const & pose ) const

References core::pose::motif::a(), protocols::match::upstream::b, distThresh_, numbRepeats_, sequenceSep_, core::pose::Pose::total_residue(), and core::pose::Pose::xyz().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::IntraRepeatContactFilter::filtered_value ( Real const & value )

References filtered_value_.

virtual filters::FilterOP protocols::simple_filters::IntraRepeatContactFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References IntraRepeatContactFilter().

virtual std::string protocols::simple_filters::IntraRepeatContactFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::IntraRepeatContactFilter::parse_my_tag	(	TagCOP	tag,
		basic::datacache::DataMap &	,
		filters::Filters_map const &	,
		Movers_map const &	,
		Pose const &
	)