protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker Class Reference

#include <ProteinAtrRepChecker.hh>

Inheritance diagram for protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker:

Public Member Functions
	ProteinAtrRepChecker (pose::Pose const &pose, utility::vector1< Size > const &moving_res_list)
	~ProteinAtrRepChecker ()
Real	delta_atr_score () const
Real	delta_rep_score () const
Real	base_atr_score () const
Real	base_rep_score () const
bool	check_screen (pose::Pose &current_pose_screen)

Private Member Functions
void	get_base_atr_rep_score (core::pose::Pose const &pose)
void	initialize_scorefxn ()

Private Attributes
utility::vector1< Size > const	moving_res_list_
Real	rep_cutoff_
Real	atr_cutoff_
Real	base_atr_score_
Real	base_rep_score_
Real	delta_atr_score_
Real	delta_rep_score_
core::scoring::ScoreFunctionOP	atr_rep_screening_scorefxn_

Constructor & Destructor Documentation

protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::ProteinAtrRepChecker	(	pose::Pose const &	pose,
		utility::vector1< Size > const &	moving_res_list
	)

References atr_cutoff_, get_base_atr_rep_score(), initialize_scorefxn(), and rep_cutoff_.

protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::~ProteinAtrRepChecker

(

)

Member Function Documentation

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_atr_score ( ) const

inline

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_rep_score ( ) const

inline

bool protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::check_screen

(

pose::Pose &

current_pose_screen

)

References atr_cutoff_, atr_rep_screening_scorefxn_, base_atr_score_, base_rep_score_, delta_atr_score_, delta_rep_score_, core::pose::Pose::energies(), core::scoring::fa_atr, core::scoring::fa_rep, rep_cutoff_, and core::scoring::Energies::total_energies().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_atr_score ( ) const

inline

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_rep_score ( ) const

inline

void protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::get_base_atr_rep_score ( core::pose::Pose const &  pose )

private

References atr_rep_screening_scorefxn_, base_atr_score_, base_rep_score_, core::scoring::fa_atr, core::scoring::fa_rep, moving_res_list_, core::pose::Pose::remove_constraints(), and protocols::stepwise::modeler::split_pose().

Referenced by ProteinAtrRepChecker().

void protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::initialize_scorefxn ( )

private

References atr_rep_screening_scorefxn_, core::scoring::fa_atr, and core::scoring::fa_rep.

Referenced by ProteinAtrRepChecker().

Member Data Documentation

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::atr_cutoff_

private

Referenced by check_screen(), and ProteinAtrRepChecker().

core::scoring::ScoreFunctionOP protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::atr_rep_screening_scorefxn_

private

Referenced by check_screen(), get_base_atr_rep_score(), and initialize_scorefxn().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_atr_score_

private

Referenced by check_screen(), and get_base_atr_rep_score().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_rep_score_

private

Referenced by check_screen(), and get_base_atr_rep_score().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_atr_score_

private

Referenced by check_screen().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_rep_score_

private

Referenced by check_screen().

utility::vector1< Size > const protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::moving_res_list_

private

Referenced by get_base_atr_rep_score().

Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::rep_cutoff_

private

Referenced by check_screen(), and ProteinAtrRepChecker().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/modeler/protein/checker/ProteinAtrRepChecker.hh
• src/protocols/stepwise/modeler/protein/checker/ProteinAtrRepChecker.cc