basic::options::OptionKeys::in Namespace Reference

Namespaces
	dbms
	file
	path
	rdf

Variables
BooleanOptionKey const	in
StringOptionKey const	Ntermini
StringOptionKey const	Ctermini
BooleanOptionKey const	use_truncated_termini
BooleanOptionKey const	ignore_unrecognized_res
BooleanOptionKey const	ignore_waters
BooleanOptionKey const	add_orbitals
BooleanOptionKey const	show_all_fixes
BooleanOptionKey const	include_sugars
BooleanOptionKey const	include_lipids
BooleanOptionKey const	include_surfaces
BooleanOptionKey const	membrane
BooleanOptionKey const	remember_unrecognized_res
BooleanOptionKey const	remember_unrecognized_water
BooleanOptionKey const	preserve_crystinfo
BooleanOptionKey const	detect_oops
BooleanOptionKey const	detect_disulf
RealOptionKey const	detect_disulf_tolerance
BooleanOptionKey const	constraints_from_link_records
BooleanOptionKey const	auto_setup_metals
BooleanOptionKey const	prevent_auto_setup_metal_bb_variants
RealOptionKey const	metals_detection_LJ_multiplier
RealOptionKey const	metals_distance_constraint_multiplier
RealOptionKey const	metals_angle_constraint_multiplier
StringVectorOptionKey const	name3_property_codes
StringVectorOptionKey const	alternate_3_letter_codes
FileOptionKey const	fix_disulf
BooleanOptionKey const	missing_density_to_jump
IntegerVectorOptionKey const	target_residues
IntegerVectorOptionKey const	replonly_residues
BooleanOptionKey const	replonly_loops
BooleanOptionKey const	use_database
StringVectorOptionKey const	select_structures_from_database

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::alternate_3_letter_codes

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::constraints_from_link_records

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ctermini

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_oops

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::in::fix_disulf

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::in

Referenced by add_rosetta_options_0(), basic::ComparingTracer::ComparingTracer(), utility::tag::Tag::create(), utility::file::file_size(), utility::file::gzip(), load_loops_from_file(), main(), utility::io::izstream::open(), utility::io::ozstream::open(), utility::io::izstream::open_ifstream(), output_packstat(), output_packstat_pdb(), read_input_weights(), numeric::read_probabilities_or_die(), register_options(), FragmentAssemblyMover::run(), boost_adaptbx::python::streambuf::seekoff(), boost_adaptbx::python::streambuf::seekoff_without_calling_python(), Solver_NU::select_working_set(), basic::resource_manager::locator::FileSystemResourceLocator::show(), utility::file::trytry_ifstream_open(), and utility::file::trytry_ofstream_open().

BooleanOptionKey const basic::options::OptionKeys::in::include_lipids

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_sugars

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::membrane

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump

Referenced by add_rosetta_options_0(), and main().

StringVectorOptionKey const basic::options::OptionKeys::in::name3_property_codes

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ntermini

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::prevent_auto_setup_metal_bb_variants

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_database

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini

Referenced by add_rosetta_options_0().