basic::options::OptionKeys::sewing Namespace Reference

Variables
BooleanOptionKey const	sewing
FileOptionKey const	model_file_name
FileOptionKey const	score_file_name
FileOptionKey const	new_model_file_name
StringOptionKey const	remove_any_dssp
StringOptionKey const	remove_all_dssp
IntegerOptionKey const	min_helix_length
IntegerOptionKey const	max_helix_length
IntegerOptionKey const	min_loop_length
IntegerOptionKey const	max_loop_length
IntegerOptionKey const	min_strand_length
IntegerOptionKey const	max_strand_length
BooleanOptionKey const	leave_models_by_ss_num
IntegerOptionKey const	model_should_have_this_num_of_ss
BooleanOptionKey const	model_should_have_at_least_1_E_at_terminal_segment
BooleanOptionKey const	model_should_have_at_least_1_E
BooleanOptionKey const	model_should_have_at_least_1_H
BooleanOptionKey const	leave_models_with_E_terminal_ss
BooleanOptionKey const	leave_models_with_H_terminal_ss
BooleanOptionKey const	leave_antiparallel_way_H_bonded_models_by_terminal_strands
BooleanOptionKey const	leave_parallel_way_H_bonded_models_by_terminal_strands
BooleanOptionKey const	leave_certain_model_ids
StringOptionKey const	leave_these_model_ids
IntegerOptionKey const	box_length
StringOptionKey const	mode
BooleanOptionKey const	disregard_num_segment_matches
BooleanOptionKey const	do_not_remove_connection_inconsistencies
BooleanOptionKey const	score_between_opposite_terminal_segments
IntegerOptionKey const	num_models_to_dump
IntegerVectorOptionKey const	models_to_dump
IntegerOptionKey const	min_hash_score
IntegerOptionKey const	max_clash_score
IntegerOptionKey const	num_segments_to_match
IntegerVectorOptionKey const	match_segments
IntegerOptionKey const	max_models
IntegerOptionKey const	starting_model
IntegerOptionKey const	num_procs
IntegerOptionKey const	rank
BooleanOptionKey const	hash_tag_only_terminal_Es
StringOptionKey const	assembly_type
IntegerOptionKey const	num_edges_to_follow
RealOptionKey const	base_native_bonus
IntegerOptionKey const	neighbor_cutoff
BooleanOptionKey const	dump_pdbs
BooleanOptionKey const	skip_refinement
BooleanOptionKey const	skip_filters
RealOptionKey const	min_motif_score
BooleanOptionKey const	may_add_already_added_model
RealOptionKey const	offset_bump_dsq
IntegerOptionKey const	num_repeats
BooleanOptionKey const	repeat
IntegerVectorOptionKey const	pose_segment_starts
IntegerVectorOptionKey const	pose_segment_ends
BooleanOptionKey const	keep_source_segments
FileOptionKey const	partner_pdb
IntegerVectorOptionKey const	keep_model_residues
IntegerOptionKey const	min_lh_fragments
BooleanOptionKey const	skip_loop_generation
IntegerOptionKey const	max_ss_num
BooleanOptionKey const	dump_every_model

Variable Documentation

StringOptionKey const basic::options::OptionKeys::sewing::assembly_type

Referenced by add_rosetta_options_13(), and main().

RealOptionKey const basic::options::OptionKeys::sewing::base_native_bonus

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::box_length

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::sewing::disregard_num_segment_matches

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::do_not_remove_connection_inconsistencies

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::sewing::dump_every_model

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::dump_pdbs

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::hash_tag_only_terminal_Es

Referenced by add_rosetta_options_13(), and main().

IntegerVectorOptionKey const basic::options::OptionKeys::sewing::keep_model_residues

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::keep_source_segments

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_antiparallel_way_H_bonded_models_by_terminal_strands

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_certain_model_ids

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_models_by_ss_num

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_models_with_E_terminal_ss

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_models_with_H_terminal_ss

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::leave_parallel_way_H_bonded_models_by_terminal_strands

Referenced by add_rosetta_options_13().

StringOptionKey const basic::options::OptionKeys::sewing::leave_these_model_ids

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::sewing::match_segments

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_clash_score

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_helix_length

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_loop_length

Referenced by add_rosetta_options_13(), and slice_ellipsoid_envelope().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_models

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_ss_num

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::max_strand_length

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::may_add_already_added_model

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::min_hash_score

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::sewing::min_helix_length

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::min_lh_fragments

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::min_loop_length

Referenced by add_rosetta_options_13().

RealOptionKey const basic::options::OptionKeys::sewing::min_motif_score

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::min_strand_length

Referenced by add_rosetta_options_13().

StringOptionKey const basic::options::OptionKeys::sewing::mode

Referenced by add_rosetta_options_13(), and main().

FileOptionKey const basic::options::OptionKeys::sewing::model_file_name

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::sewing::model_should_have_at_least_1_E

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::model_should_have_at_least_1_E_at_terminal_segment

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::model_should_have_at_least_1_H

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::model_should_have_this_num_of_ss

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::sewing::models_to_dump

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::neighbor_cutoff

Referenced by add_rosetta_options_13(), and ExposedStrandMover::is_exposed().

FileOptionKey const basic::options::OptionKeys::sewing::new_model_file_name

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::num_edges_to_follow

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::num_models_to_dump

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::num_procs

Referenced by add_rosetta_options_13(), and main().

IntegerOptionKey const basic::options::OptionKeys::sewing::num_repeats

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::num_segments_to_match

Referenced by add_rosetta_options_13(), and main().

RealOptionKey const basic::options::OptionKeys::sewing::offset_bump_dsq

Referenced by add_rosetta_options_13().

FileOptionKey const basic::options::OptionKeys::sewing::partner_pdb

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::sewing::pose_segment_ends

Referenced by add_rosetta_options_13().

IntegerVectorOptionKey const basic::options::OptionKeys::sewing::pose_segment_starts

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::rank

Referenced by add_rosetta_options_13(), and main().

StringOptionKey const basic::options::OptionKeys::sewing::remove_all_dssp

Referenced by add_rosetta_options_13().

StringOptionKey const basic::options::OptionKeys::sewing::remove_any_dssp

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::repeat

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::score_between_opposite_terminal_segments

Referenced by add_rosetta_options_13().

FileOptionKey const basic::options::OptionKeys::sewing::score_file_name

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::sewing::sewing

Referenced by add_rosetta_options_13(), and main().

BooleanOptionKey const basic::options::OptionKeys::sewing::skip_filters

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::skip_loop_generation

Referenced by add_rosetta_options_13().

BooleanOptionKey const basic::options::OptionKeys::sewing::skip_refinement

Referenced by add_rosetta_options_13().

IntegerOptionKey const basic::options::OptionKeys::sewing::starting_model

Referenced by add_rosetta_options_13(), and main().