#include <devel/init.hh>
#include <protocols/comparative_modeling/AlignmentClustering.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
References basic::options::OptionKeys::cluster::cluster, utility::io::oc::cout, devel::init(), and utility::excn::EXCN_Base::msg().