test.Workshop5test Namespace Reference

Variables
tuple	start = pose_from_file("../test/data/workshops/1YY8.clean.pdb")
tuple	test = Pose()
tuple	pmm = PyMOL_Mover()
float	kT = 1.0
int	n_moves = 1
tuple	movemap = MoveMap()
tuple	small_mover = SmallMover(movemap, kT, n_moves)
tuple	shear_mover = ShearMover(movemap, kT, n_moves)
tuple	test2 = Pose()
tuple	min_mover = MinMover()
tuple	mm4060 = MoveMap()
tuple	scorefxn = create_score_function("talaris2013")
tuple	mc = MonteCarlo(test, scorefxn, kT)
tuple	trial_mover = TrialMover(small_mover, mc)
tuple	seq_mover = SequenceMover()
tuple	trialmover = TrialMover(seq_mover, mc)
tuple	repeat_mover = RepeatMover(trialmover, 5)
tuple	relax = ClassicRelax()

Variable Documentation

float test.Workshop5test.kT = 1.0

Referenced by add_rosetta_options_12().

tuple test.Workshop5test.mc = MonteCarlo(test, scorefxn, kT)

Referenced by add_rosetta_options_10(), HbsDesignMover.apply(), PeptoidDesignMover.apply(), OopDesignMover.apply(), CoupledMovesProtocol.apply(), UBQ_GTPaseMover.apply(), UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), zinc1_homodimer_design.design_symmetric_homodimer_interface(), zinc2_homodimer_design.design_symmetric_homodimer_metal_interface(), and run_mc().

tuple test.Workshop5test.min_mover = MinMover()

tuple test.Workshop5test.mm4060 = MoveMap()

tuple test.Workshop5test.movemap = MoveMap()

int test.Workshop5test.n_moves = 1

tuple test.Workshop5test.pmm = PyMOL_Mover()

tuple test.Workshop5test.relax = ClassicRelax()

Referenced by add_rosetta_options_12(), add_rosetta_options_3(), add_rosetta_options_4(), add_rosetta_options_5(), add_rosetta_options_6(), main(), FastRelaxPerformanceBenchmark.setup_for_mmstd(), FastRelaxPerformanceBenchmark.setup_for_sc12he(), FastRelaxPerformanceBenchmark.setup_for_sc12sp2(), FastRelaxPerformanceBenchmark.setup_for_score12(), and FastRelaxPerformanceBenchmark.setup_for_sp2hecart().

tuple test.Workshop5test.repeat_mover = RepeatMover(trialmover, 5)

tuple test.Workshop5test.scorefxn = create_score_function("talaris2013")

tuple test.Workshop5test.seq_mover = SequenceMover()

Referenced by main().

tuple test.Workshop5test.shear_mover = ShearMover(movemap, kT, n_moves)

Referenced by UBQ_GTPaseMover.apply(), UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), ShearMoverBenchmark.run(), run_mc(), and ShearMoverBenchmark.setUp().

tuple test.Workshop5test.small_mover = SmallMover(movemap, kT, n_moves)

Referenced by UBQ_GTPaseMover.apply(), UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), SmallMoverBenchmark.run(), run_mc(), and SmallMoverBenchmark.setUp().

tuple test.Workshop5test.start = pose_from_file("../test/data/workshops/1YY8.clean.pdb")

Referenced by add_rosetta_options_6(), SVC_Q.get_Q(), ONE_CLASS_Q.get_Q(), basic::gpu::Timer.GetTime(), numeric::IntervalSet< double >.IntervalSet(), numeric.linear_interpolate(), main(), apps::public1::scenarios::chemically_conjugated_docking.pack_extra_bodies(), basic.prof_stop_function_body(), numeric::IntervalSet< double >.push_back(), utility.replace_environment_variables(), basic::gpu::Timer.Reset(), numeric::IntervalSet< double >.set(), utility.split(), utility.split_by_newlines(), utility.split_to_list(), utility.split_to_set(), svm_cross_validation(), svm_group_classes(), svm_predict_values(), svm_train(), numeric::interpolation::spline::PolycubicSpline.train(), numeric::interpolation::spline::TricubicSpline.train(), and basic::DynamicProfileThis.~DynamicProfileThis().

tuple test.Workshop5test.test = Pose()

tuple test.Workshop5test.test2 = Pose()

tuple test.Workshop5test.trial_mover = TrialMover(small_mover, mc)

tuple test.Workshop5test.trialmover = TrialMover(seq_mover, mc)