Public Member Functions
def	__init__

def	__exit__

def	set_basic_options

def	set_structID

def	set_pdbID

def	set_modelID

def	read_pdb_into_database_flat

def	fetch_and_read_pdb_into_database

Public Attributes
	db

	db_util

	pdb_url

	pdbID

	modelID

	structID

Constructor & Destructor Documentation

def app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.__init__	(	self,
		pdbID,
		modelID,
		structID,
		memory = `False`,
		path = `False`
	)

modelID is basically a label
Path specifies the db to load.

Member Function Documentation

def app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.__exit__ ( self )

def app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.fetch_and_read_pdb_into_database	(	self,
		pdbID,
		read_header = `False`,
		header_only = `False`
	)

Uses the PDB file specified, grabs it from the PDB, and reads the data in.

References app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.pdbID, app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbID, and app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.read_pdb_into_database_flat().

def app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.read_pdb_into_database_flat	(	self,
		filePath,
		specific_chain = `False`,
		read_header = `False`,
		header_only = `False`
	)

Reads the flat filepath specified into a database structure.
This can then be parsed using the PDB_Database class.
NOTE: Reading of header not implemented.
if header_only is True, only loads the header.  Useful for just getting specific information.  More useful to D/L it from the pdb if possible.
If Header only, reads the header into the database.

References app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.db, app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.modelID, basic::database.open(), app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.pdb_url, app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.pdbID, app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbID, ObjexxFCL.strip(), and app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.structID.

Referenced by app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.fetch_and_read_pdb_into_database().