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Rosetta
2016.11
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Classes | |
class | Bite |
class | Skip |
Typedefs | |
typedef char * | cstring |
typedef char const * | c_cstring |
Functions | |
template<typename T > | |
std::string | SW (FArray1< T > const &a) |
Standard Width Format: FArray1. More... | |
Bite< Fstring > | bite (Fstring &t) |
Fstring Bite Maker: Take Length of Fstring. More... | |
template<> | |
std::string | SS (bool const &t) |
Single-Spaced Format: bool Specialization. More... | |
template<> | |
std::string | SS (float const &t) |
Single-Spaced Format: float Specialization. More... | |
template<> | |
std::string | SS (double const &t) |
Single-Spaced Format: double Specialization. More... | |
template<> | |
std::string | SS (long double const &t) |
Single-Spaced Format: long double Specialization. More... | |
template<> | |
std::string | SS (std::complex< float > const &t) |
Single-Spaced Format: complex< float > Specialization. More... | |
template<> | |
std::string | SS (std::complex< double > const &t) |
Single-Spaced Format: complex< double > Specialization. More... | |
template<> | |
std::string | SS (std::complex< long double > const &t) |
Single-Spaced Format: complex< long double > Specialization. More... | |
std::string | A (int const w, char const c) |
char Format More... | |
std::string | A (char const c) |
char Format (Width==1) More... | |
std::string | A (int const w, c_cstring const s) |
cstring Format More... | |
std::string | A (c_cstring const s) |
cstring Format (Width of cstring) More... | |
std::string | A (int const w, std::string const &s) |
string Format More... | |
std::string const & | A (std::string const &s) |
string Format (Width of string) More... | |
std::string | A (int const w, Fstring const &s) |
Fstring Format. More... | |
std::string | A (Fstring const &s) |
Fstring Format (Width of Fstring) More... | |
std::string | X (int const w) |
Blank string. More... | |
std::string | space (int const w) |
Blank string. More... | |
std::string | repeat (int const w, char c) |
Blank string. More... | |
std::string | L (int const w, bool const &t) |
Logical Format. More... | |
std::string | L (bool const &t) |
Logical Format (Width==1) More... | |
std::string | E (int const w, int const d, float const &t) |
Exponential Format: float. More... | |
std::string | E (int const w, int const d, double const &t) |
Exponential Format: double. More... | |
std::string | E (int const w, int const d, long double const &t) |
Exponential Format: long double. More... | |
std::string | E (int const w, int const d, std::complex< float > const &t) |
Exponential Format: complex< float > More... | |
std::string | E (int const w, int const d, std::complex< double > const &t) |
Exponential Format: complex< double > More... | |
std::string | E (int const w, int const d, std::complex< long double > const &t) |
Exponential Format: complex< long double > More... | |
std::string | F (int const w, int const d, float const &t) |
Fixed Point Format: float. More... | |
std::string | F (int const w, int const d, double const &t) |
Fixed Point Format: double. More... | |
std::string | F (int const w, int const d, long double const &t) |
Fixed Point Format: long double. More... | |
std::string | F (int const w, int const d, std::complex< float > const &t) |
Fixed Point Format: complex< float > More... | |
std::string | F (int const w, int const d, std::complex< double > const &t) |
Fixed Point Format: complex< double > More... | |
std::string | F (int const w, int const d, std::complex< long double > const &t) |
Fixed Point Format: complex< long double > More... | |
std::string | G (int const w, int const d, float const &t) |
General Format: float. More... | |
std::string | G (int const w, int const d, double const &t) |
General Format: double. More... | |
std::string | G (int const w, int const d, long double const &t) |
General Format: long double. More... | |
std::string | G (int const w, int const d, std::complex< float > const &t) |
General Format: complex< float > More... | |
std::string | G (int const w, int const d, std::complex< double > const &t) |
General Format: complex< double > More... | |
std::string | G (int const w, int const d, std::complex< long double > const &t) |
General Format: complex< long double > More... | |
template<> | |
std::string | SW (bool const &t) |
Standard Width Format: bool Specialization. More... | |
template<> | |
std::string | SW (byte const &t) |
Standard Width Format: byte Specialization. More... | |
template<> | |
std::string | SW (short int const &t) |
Standard Width Format: short Specialization. More... | |
template<> | |
std::string | SW (unsigned short int const &t) |
Standard Width Format: unsigned short Specialization. More... | |
template<> | |
std::string | SW (int const &t) |
Standard Width Format: int Specialization. More... | |
template<> | |
std::string | SW (unsigned int const &t) |
Standard Width Format: unsigned int Specialization. More... | |
template<> | |
std::string | SW (long int const &t) |
Standard Width Format: long int Specialization. More... | |
template<> | |
std::string | SW (unsigned long int const &t) |
Standard Width Format: unsigned long int Specialization. More... | |
template<> | |
std::string | SW (float const &t) |
Standard Width Format: float Specialization. More... | |
template<> | |
std::string | SW (double const &t) |
Standard Width Format: double Specialization. More... | |
template<> | |
std::string | SW (long double const &t) |
Standard Width Format: long double Specialization. More... | |
template<> | |
std::string | SW (std::complex< float > const &t) |
Standard Width Format: complex< float > Specialization. More... | |
template<> | |
std::string | SW (std::complex< double > const &t) |
Standard Width Format: complex< double > Specialization. More... | |
template<> | |
std::string | SW (std::complex< long double > const &t) |
Standard Width Format: complex< long double > Specialization. More... | |
std::ios_base & | general (std::ios_base &base) |
general: Manipulator to Turn Off scientific or fixed More... | |
char const | SPACE ( ' ') |
template<typename T > | |
std::istream & | operator>> (std::istream &stream, Bite< T > const &bite) |
Input a Bite from Stream. More... | |
bool | is_blank_string (std::string const &s) |
string is Blank? More... | |
template<typename T > | |
Bite< T > | bite (int const w, T &t) |
Width + Value Bite Maker. More... | |
template<typename T > | |
Bite< T > | bite (int const w, int const d, T &t) |
Width + Precision + Value Bite Maker. More... | |
Bite< bool > | bite (bool &t) |
bool Bite Maker: Take One Character More... | |
Bite< char > | bite (char &t) |
char Bite Maker: Take One Character More... | |
Bite< std::string > | bite (std::string &t) |
string Bite Maker: Take Rest of Line More... | |
std::istream & | operator>> (std::istream &stream, Skip const &skip) |
Input a Skip from Stream. More... | |
Skip | skip (int const w=1) |
Skip Maker. More... | |
std::istream & | skip (std::istream &stream) |
Skip Rest of Line and Line Terminator (Manipulator) More... | |
template<typename T > | |
std::string | SS (T const &t) |
Single-Spaced Format. More... | |
template<typename T > | |
std::string | LJ (int const w, T const &t) |
Left-Justified Width-Specified Format. More... | |
template<typename T > | |
std::string | RJ (int const w, T const &t) |
Right-Justified Width-Specified Format. More... | |
template<typename T > | |
std::string | I (int const w, T const &t) |
Integer Format. More... | |
template<typename T > | |
std::string | I (int const w, int const m, T const &t) |
Integer Format with Minimum Digits. More... | |
template<typename T > | |
std::string | SW (T const &t) |
Standard Width Format: Default Implementation. More... | |
std::string | nl_if (int const i, int const n) |
Newline utility for formatted output implied DO loop emulation. More... | |
typedef char const* ObjexxFCL::format::c_cstring |
std::string ObjexxFCL::format::A | ( | int const | w, |
char const | c | ||
) |
char Format
Referenced by A(), numeric::geometry::hashing::SixDCoordinateBinner::bin_index(), numeric::kinematic_closure::radians::bridge_objects(), numeric::kinematic_closure::bridgeObjects(), numeric::kinematic_closure::dixon_sturm(), numeric::kinematic_closure::dixonResultant(), ObjexxFCL::FArray2< T >::is_identity(), main(), numeric::model_quality::MatrixMult(), ObjexxFCL::FArray2< T >::operator*=(), predict_chem_map_test(), basic::prof_show(), ObjexxFCL::FArray2< T >::right_multiply_by_transpose(), basic::svd::SVD_Solver::run_score_svd_on_matrix(), ObjexxFCL::FArray2< T >::set_diagonal(), basic::svd::SVD_Solver::set_matrix_A(), utility::options::OptionCollection::show_help_hier(), utility::options::OptionCollection::show_option_help_hier(), ObjexxFCL::FArray2< T >::symmetric(), numeric::kinematic_closure::test_dixon(), numeric::kinematic_closure::test_point_value2(), numeric::kinematic_closure::test_polyProduct2x2(), numeric::kinematic_closure::test_polyProduct4sq(), numeric::kinematic_closure::test_polyProduct4x2(), numeric::kinematic_closure::test_polyProduct4x4(), numeric::kinematic_closure::test_polyProduct6x6(), numeric::kinematic_closure::test_triaxialCoefficients(), ObjexxFCL::FArray2< T >::to_diag(), ObjexxFCL::FArray2< T >::to_identity(), ObjexxFCL::FArray2< T >::transpose(), and numeric::kinematic_closure::radians::triaxialCoefficients().
std::string ObjexxFCL::format::A | ( | char const | c | ) |
char Format (Width==1)
std::string ObjexxFCL::format::A | ( | c_cstring const | s | ) |
cstring Format (Width of cstring)
std::string ObjexxFCL::format::A | ( | int const | w, |
std::string const & | s | ||
) |
string Format
References basic::options::OptionKeys::in::file::s.
std::string const & ObjexxFCL::format::A | ( | std::string const & | s | ) |
string Format (Width of string)
References basic::options::OptionKeys::in::file::s.
std::string ObjexxFCL::format::A | ( | int const | w, |
Fstring const & | s | ||
) |
Fstring Format.
References ObjexxFCL::Fstring::length(), and basic::options::OptionKeys::in::file::s.
std::string ObjexxFCL::format::A | ( | Fstring const & | s | ) |
Fstring Format (Width of Fstring)
References basic::options::OptionKeys::in::file::s.
Fstring Bite Maker: Take Length of Fstring.
References ObjexxFCL::Fstring::length(), and basic::options::OptionKeys::in::file::t.
Width + Value Bite Maker.
References basic::options::OptionKeys::in::file::t, and numeric::statistics::w().
Width + Precision + Value Bite Maker.
References basic::options::OptionKeys::in::file::t, and numeric::statistics::w().
bool Bite Maker: Take One Character
References basic::options::OptionKeys::in::file::t.
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char Bite Maker: Take One Character
References basic::options::OptionKeys::in::file::t.
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string Bite Maker: Take Rest of Line
References max(), and basic::options::OptionKeys::in::file::t.
Exponential Format: float.
References max(), min(), basic::options::OptionKeys::in::file::t, and ObjexxFCL::uppercase().
Referenced by numeric::model_quality::findUU(), G(), numeric::model_quality::maxsub(), exclude::mb_exclude(), numeric::model_quality::rmsfitca2(), and numeric::model_quality::rmsfitca3().
Exponential Format: double.
References max(), min(), basic::options::OptionKeys::in::file::t, and ObjexxFCL::uppercase().
Exponential Format: long double.
References max(), min(), basic::options::OptionKeys::in::file::t, and ObjexxFCL::uppercase().
Exponential Format: complex< float >
References max(), min(), and ObjexxFCL::uppercase().
Exponential Format: complex< double >
References max(), min(), and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::E | ( | int const | w, |
int const | d, | ||
std::complex< long double > const & | t | ||
) |
Exponential Format: complex< long double >
References max(), min(), and ObjexxFCL::uppercase().
Fixed Point Format: float.
References ObjexxFCL::abs(), demo.D060_Folding::f, basic::options::OptionKeys::optE::fixed, max(), min(), basic::options::OptionKeys::score::fiber_diffraction::p, ObjexxFCL::pow(), basic::options::OptionKeys::in::file::t, and x().
Referenced by numeric::NumericTraits< float >::angle_tolerance(), numeric::interpolation::periodic_range::full::bilinearly_interpolated(), numeric::interpolation::periodic_range::half::bilinearly_interpolated(), numeric::ccd_angle(), numeric::geometry::hashing::xyzStripeHash::debug_pdb(), F(), G(), numeric::NumericTraits< float >::length_tolerance(), main(), measure_sequence_recovery(), numeric::NumericTraits< float >::one(), numeric::operator<<(), output_packstat_pdb(), predict_chem_map_test(), print_ddgs(), basic::prof_show(), numeric::NumericTraits< float >::quaternion_tolerance(), rna_features_from_pose(), rna_sequence_recovery_metrics(), sequence_tolerance_main(), numeric::NumericTraits< float >::sin_cos_tolerance(), numeric::NumericTraits< float >::tolerance(), numeric::NumericTraits< float >::two(), and numeric::NumericTraits< float >::zero().
Fixed Point Format: double.
References ObjexxFCL::abs(), F(), basic::options::OptionKeys::optE::fixed, max(), min(), basic::options::OptionKeys::score::fiber_diffraction::p, ObjexxFCL::pow(), basic::options::OptionKeys::in::file::t, and x().
Fixed Point Format: long double.
References ObjexxFCL::abs(), F(), basic::options::OptionKeys::optE::fixed, basic::options::OptionKeys::in::file::l, L(), max(), min(), basic::options::OptionKeys::score::fiber_diffraction::p, ObjexxFCL::pow(), basic::options::OptionKeys::in::file::t, and x().
Fixed Point Format: complex< float >
References F().
Fixed Point Format: complex< double >
References F().
std::string ObjexxFCL::format::F | ( | int const | w, |
int const | d, | ||
std::complex< long double > const & | t | ||
) |
Fixed Point Format: complex< long double >
References F().
General Format: float.
References ObjexxFCL::abs(), E(), F(), and ObjexxFCL::pow().
General Format: double.
References ObjexxFCL::abs(), E(), F(), and ObjexxFCL::pow().
General Format: long double.
References ObjexxFCL::abs(), E(), F(), basic::options::OptionKeys::in::file::l, L(), and ObjexxFCL::pow().
General Format: complex< float >
References G().
General Format: complex< double >
References G().
std::string ObjexxFCL::format::G | ( | int const | w, |
int const | d, | ||
std::complex< long double > const & | t | ||
) |
General Format: complex< long double >
References G().
std::ios_base & ObjexxFCL::format::general | ( | std::ios_base & | base | ) |
general: Manipulator to Turn Off scientific or fixed
References basic::options::OptionKeys::optE::fixed.
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Integer Format.
References basic::options::OptionKeys::ufv::right, and basic::options::OptionKeys::in::file::t.
Referenced by check_for_contacts_and_output_jump_o2prime(), check_for_contacts_and_output_jump_phosphate(), create_bp_jump_database_test(), numeric::geometry::hashing::xyzStripeHash::debug_pdb(), numeric::kinematic_closure::dixon_eig(), numeric::expand_xforms(), ObjexxFCL::floops(), get_bps_sub_dir(), basic::get_usage_from_procfilesystem(), main(), predict_chem_map_test(), basic::prof_show(), rhiju_pdbstats(), rna_features_from_pose(), rna_sequence_recovery_metrics(), and SW().
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Integer Format with Minimum Digits.
References max(), min(), basic::options::OptionKeys::ufv::right, and basic::options::OptionKeys::in::file::t.
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string is Blank?
Referenced by ObjexxFCL::format::Bite< T >::assign().
Logical Format.
Referenced by numeric::NumericTraits< long double >::angle_tolerance(), numeric::NumericTraits< T >::deg2rad(), numeric::NumericTraits< T >::degrees_to_radians(), F(), G(), numeric::NumericTraits< long double >::length_tolerance(), numeric::NumericTraits< T >::one(), numeric::NumericTraits< long double >::one(), numeric::NumericTraits< T >::pi(), numeric::NumericTraits< T >::pi_2(), numeric::NumericTraits< T >::pi_2_over_3(), numeric::NumericTraits< T >::pi_3_over_4(), numeric::NumericTraits< T >::pi_over_180(), numeric::NumericTraits< T >::pi_over_2(), numeric::NumericTraits< T >::pi_over_3(), numeric::NumericTraits< T >::pi_over_4(), numeric::NumericTraits< long double >::quaternion_tolerance(), numeric::NumericTraits< T >::rad2deg(), numeric::NumericTraits< T >::radians_to_degrees(), numeric::NumericTraits< long double >::sin_cos_tolerance(), SS(), SW(), numeric::kinematic_closure::test_cross(), numeric::NumericTraits< long double >::tolerance(), numeric::kinematic_closure::triaxialCoefficients(), numeric::kinematic_closure::radians::triaxialCoefficients(), numeric::NumericTraits< T >::two(), numeric::NumericTraits< long double >::two(), numeric::NumericTraits< T >::zero(), and numeric::NumericTraits< long double >::zero().
std::string ObjexxFCL::format::L | ( | bool const & | t | ) |
Logical Format (Width==1)
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Left-Justified Width-Specified Format.
References basic::options::OptionKeys::ufv::left, and basic::options::OptionKeys::in::file::t.
Referenced by utility::options::OptionCollection::show_help_hier().
Newline utility for formatted output implied DO loop emulation.
std::istream& ObjexxFCL::format::operator>> | ( | std::istream & | stream, |
Bite< T > const & | bite | ||
) |
Input a Bite from Stream.
References ObjexxFCL::format::Bite< T >::assign(), basic::options::OptionKeys::mh::match::ss, and ObjexxFCL::format::Bite< T >::w_.
std::istream& ObjexxFCL::format::operator>> | ( | std::istream & | stream, |
Skip const & | skip | ||
) |
Input a Skip from Stream.
References ObjexxFCL::format::Skip::w_.
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Right-Justified Width-Specified Format.
References basic::options::OptionKeys::ufv::right, and basic::options::OptionKeys::in::file::t.
Referenced by utility::options::OptionCollection::show_help_hier(), and utility::options::OptionCollection::show_option_help_hier().
Skip Maker.
References numeric::statistics::w().
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char const ObjexxFCL::format::SPACE | ( | ' ' | ) |
Referenced by ObjexxFCL::format::Bite< T >::assign().
std::string ObjexxFCL::format::SS | ( | bool const & | t | ) |
Single-Spaced Format: bool Specialization.
References L().
Referenced by basic::options::int2afteroption(), basic::options::intafteroption(), basic::options::optional_positive_intafteroption(), basic::options::real2afteroption(), basic::options::real3afteroption(), and basic::options::realafteroption().
std::string ObjexxFCL::format::SS | ( | float const & | t | ) |
Single-Spaced Format: float Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::SS | ( | double const & | t | ) |
Single-Spaced Format: double Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::SS | ( | long double const & | t | ) |
Single-Spaced Format: long double Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::SS | ( | std::complex< float > const & | t | ) |
Single-Spaced Format: complex< float > Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::SS | ( | std::complex< double > const & | t | ) |
Single-Spaced Format: complex< double > Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::SS | ( | std::complex< long double > const & | t | ) |
Single-Spaced Format: complex< long double > Specialization.
References basic::options::OptionKeys::ufv::left, and ObjexxFCL::uppercase().
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Single-Spaced Format.
References basic::options::OptionKeys::ufv::left, basic::options::OptionKeys::in::file::t, and ObjexxFCL::uppercase().
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Standard Width Format: FArray1.
References basic::options::OptionKeys::in::file::s, and ObjexxFCL::FArray< typename >::size().
Referenced by SW().
std::string ObjexxFCL::format::SW | ( | bool const & | t | ) |
Standard Width Format: bool Specialization.
References L().
std::string ObjexxFCL::format::SW | ( | byte const & | t | ) |
Standard Width Format: byte Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | short int const & | t | ) |
Standard Width Format: short Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | unsigned short int const & | t | ) |
Standard Width Format: unsigned short Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | int const & | t | ) |
Standard Width Format: int Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | unsigned int const & | t | ) |
Standard Width Format: unsigned int Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | long int const & | t | ) |
Standard Width Format: long int Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | unsigned long int const & | t | ) |
Standard Width Format: unsigned long int Specialization.
References I().
std::string ObjexxFCL::format::SW | ( | float const & | t | ) |
Standard Width Format: float Specialization.
References G().
std::string ObjexxFCL::format::SW | ( | double const & | t | ) |
Standard Width Format: double Specialization.
References G().
std::string ObjexxFCL::format::SW | ( | long double const & | t | ) |
Standard Width Format: long double Specialization.
References G().
std::string ObjexxFCL::format::SW | ( | std::complex< float > const & | t | ) |
Standard Width Format: complex< float > Specialization.
References SW().
std::string ObjexxFCL::format::SW | ( | std::complex< double > const & | t | ) |
Standard Width Format: complex< double > Specialization.
References SW().
std::string ObjexxFCL::format::SW | ( | std::complex< long double > const & | t | ) |
Standard Width Format: complex< long double > Specialization.
References SW().
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Standard Width Format: Default Implementation.
References basic::options::OptionKeys::ufv::left, basic::options::OptionKeys::in::file::t, and ObjexxFCL::uppercase().
std::string ObjexxFCL::format::X | ( | int const | w | ) |
Blank string.
References max().
Referenced by numeric::interpolation::bilinearly_interpolated(), numeric::interpolation::periodic_range::full::bilinearly_interpolated(), numeric::interpolation::periodic_range::half::bilinearly_interpolated(), numeric::interpolation::periodic_range::full::bin(), numeric::interpolation::periodic_range::half::bin(), numeric::interpolation::Histogram< typename, typename >::bin_number(), numeric::interpolation::Histogram< typename, typename >::derivative_linear(), numeric::fourier::fft(), numeric::fourier::fft2(), numeric::fourier::fft3(), numeric::fourier::fft3_dynamic(), numeric::xyzTransform< numeric::Real >::from_quaternion(), numeric::fourier::ifft(), numeric::fourier::ifft2(), numeric::fourier::ifft3(), numeric::fourier::ifft3_dynamic(), numeric::interpolation::Histogram< typename, typename >::interpolate_flat(), numeric::interpolation::Histogram< typename, typename >::interpolate_linear(), numeric::interpolation::interpolated(), numeric::interpolation::periodic_range::full::interpolated(), numeric::interpolation::periodic_range::half::interpolated(), numeric::interpolation::Histogram< typename, typename >::last_bin(), numeric::interpolation::Histogram< typename, typename >::last_bin_right(), numeric::MakeVector(), numeric::MathVector< Real >::MakeVector(), numeric::interpolation::Histogram< typename, typename >::maximum(), numeric::interpolation::Histogram< typename, typename >::minimum(), numeric::operator!=(), and numeric::operator==().