protocols::jumping::BaseJumpSetup Class Reference

virtual base class: can create a set of jumps and cuts More...

#include <JumpSetup.hh>

Inheritance diagram for protocols::jumping::BaseJumpSetup:

Public Member Functions
virtual	~BaseJumpSetup ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
virtual JumpSample	create_jump_sample () const =0
virtual core::fragment::FragSetOP	generate_jump_frags (JumpSample const &, core::kinematics::MoveMap const &mm) const
	returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More...
virtual JumpSample	clean_jumps (JumpSample const &) const =0
	take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample() More...
virtual std::string	type_name () const =0

Detailed Description

virtual base class: can create a set of jumps and cuts

Constructor & Destructor Documentation

protocols::jumping::BaseJumpSetup::~BaseJumpSetup ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Member Function Documentation

virtual JumpSample protocols::jumping::BaseJumpSetup::clean_jumps ( JumpSample const &  ) const

pure virtual

take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample()

Implemented in protocols::jumping::JumpSelector, protocols::jumping::JumpSetup, protocols::jumping::ResiduePairJumpSetup, protocols::jumping::SheetBuilder, and protocols::abinitio::TemplateJumpSetup.

virtual JumpSample protocols::jumping::BaseJumpSetup::create_jump_sample ( ) const

pure virtual

Implemented in protocols::jumping::JumpSelector, protocols::jumping::JumpsFromAllPairings, protocols::jumping::JumpSetup, protocols::jumping::ResiduePairJumpSetup, protocols::abinitio::FixTemplateJumpSetup, protocols::jumping::SheetBuilder, and protocols::abinitio::TemplateJumpSetup.

FragSetOP protocols::jumping::BaseJumpSetup::generate_jump_frags ( JumpSample const &  jumps, core::kinematics::MoveMap const &  mm  ) const

virtual

returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample

Reimplemented in protocols::jumping::ResiduePairJumpSetup, and protocols::abinitio::TemplateJumpSetup.

References protocols::jumping::JumpSample::generate_jump_frags().

virtual std::string protocols::jumping::BaseJumpSetup::type_name ( ) const

pure virtual

Implemented in protocols::jumping::JumpSelector, protocols::jumping::JumpSetup, protocols::jumping::SheetBuilder, protocols::jumping::RandomSheetBuilder, protocols::abinitio::TemplateJumpSetup, and protocols::jumping::ResiduePairJumpSetup.

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The documentation for this class was generated from the following files:

• src/protocols/jumping/JumpSetup.hh
• src/protocols/jumping/JumpSetup.cc