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Rosetta
2016.11
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single loop definition More...
#include <Loop.hh>
Public Member Functions | |
virtual | ~Loop () |
Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
Loop () | |
default constructor More... | |
Loop (SerializedLoop loop) | |
Loop (core::Size const start_in, core::Size const stop_in, core::Size const cut_in=0, core::Real skip_rate=0.0, bool const extended_in=false) | |
input constructor More... | |
bool | is_extended () const |
core::Size | start () const |
core::Size | stop () const |
core::Size | cut () const |
core::Size | size () const |
core::Real | skip_rate () const |
void | set_extended (bool input) |
void | set_start (core::Size input) |
void | set_stop (core::Size input) |
void | set_cut (core::Size input) |
core::Size | length () const |
Assuming that the loop represents a contiguous stretch of residues, returns the length. Makes no assumptions about directionality. That is, Loop(3,8).length() == Loop(8,3).length(). Constant time procedure. More... | |
bool | increasing () const |
Returns true if the loop's elements are increasing. More... | |
bool | decreasing () const |
Returns true if the loop's elements are decreasing. More... | |
core::Size | midpoint () const |
Returns the midpoint of the loop. More... | |
bool | operator< (Loop const &larger) const |
bool | operator== (Loop const &other) const |
bool | operator!= (Loop const &other) const |
void | get_residues (utility::vector1< Size > &selection) const |
add all residues within this loop definition into selection More... | |
void | switch_movemap (core::kinematics::MoveMap &movemap, core::id::TorsionType, bool allow_moves=true) const |
switch DOF_Type for residues in loop. id::CHI, id::BB — don't use with id::JUMP More... | |
void | choose_cutpoint (core::pose::Pose const &pose) |
void | auto_choose_cutpoint (core::pose::Pose const &pose) |
Autochoose a cutpoint using the secondary structure of the pose unless cutpoint is already set. More... | |
bool | is_terminal (core::pose::Pose const &pose) const |
virtual void | show (std::ostream &output=std::cout) const |
Generate a string representation of Loop. More... | |
Private Attributes | |
core::Size | start_ |
core::Size | stop_ |
core::Size | cut_ |
core::Real | skip_rate_ |
bool | extended_ |
single loop definition
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Automatically generated virtual destructor for class deriving directly from ReferenceCount.
Auto-generated virtual destructor
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default constructor
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input constructor
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Autochoose a cutpoint using the secondary structure of the pose unless cutpoint is already set.
References choose_cutpoint(), and cut_.
Referenced by protocols::loops::loop_mover::IndependentLoopMover::apply().
void protocols::loops::Loop::choose_cutpoint | ( | core::pose::Pose const & | pose | ) |
Choose a cutpoint for the loop if one is not specified. Allow any residue to serve as the cutpoint, but prefer those to the center.
References core::conformation::Residue::aa(), core::chemical::aa_pro, cut_, core::pose::Pose::residue(), core::pose::Pose::secstruct(), start_, stop_, core::pose::Pose::total_residue(), and protocols::loops::tr().
Referenced by protocols::LoopRefine::apply(), auto_choose_cutpoint(), protocols::LoopRebuild::build_loop_with_ccd_closure(), protocols::abinitio::AbrelaxApplication::fold(), and protocols::protein_interface_design::movers::PlaceOnLoop::minimize_toward_stub().
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References cut_.
Referenced by protocols::loops::Loops::add_loop(), protocols::loops::Loops::add_overlap_loop(), protocols::loops::add_single_cutpoint_variant(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::adjust_residue_to_minimize_deviation(), protocols::antibody::H3PerturbCCD::apply(), protocols::antibody::RefineOneCDRLoop::apply(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::LoopRebuild::build_loop_with_ccd_closure(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::calculate_ccd_angle(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::close_loop_in_single_direction(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::kinematic_closure::ClosureProblem::cut_residue(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::antibody::H3RefineCCD::init(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::KIC_loop_close(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), protocols::denovo_design::components::StructureData::new_jump_and_cutpoint(), operator<(), operator==(), protocols::kinematic_closure::pivot_pickers::LoopPivots::pick(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::antibody_legacy::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody_legacy::simple_one_loop_fold_tree(), protocols::antibody::simple_one_loop_fold_tree(), and protocols::loops::loop_mover::LoopCM::yield_claims().
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Returns true if the loop's elements are decreasing.
References increasing().
void protocols::loops::Loop::get_residues | ( | utility::vector1< Size > & | selection | ) | const |
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Returns true if the loop's elements are increasing.
References start(), and stop().
Referenced by decreasing(), and midpoint().
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References extended_.
Referenced by protocols::loops::Loops::add_overlap_loop(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::loop_modeling::LoopBuilder::do_apply(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), and protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop().
bool protocols::loops::Loop::is_terminal | ( | core::pose::Pose const & | pose | ) | const |
Detect a terminal loop, logic is more complicated for multi-chain poses. Returns TRUE for terminal loops.
References core::pose::Pose::chain(), core::conformation::Residue::is_lower_terminus(), core::conformation::Residue::is_protein(), core::conformation::Residue::is_upper_terminus(), core::pose::Pose::residue(), start(), stop(), and core::pose::Pose::total_residue().
Referenced by protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), and protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop().
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Assuming that the loop represents a contiguous stretch of residues, returns the length. Makes no assumptions about directionality. That is, Loop(3,8).length() == Loop(8,3).length(). Constant time procedure.
References start(), and stop().
Referenced by protocols::sewing::LoophashAssemblyMover::add_loophash_segments(), protocols::nonlocal::avg_ca_position(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::decompose(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), midpoint(), protocols::kinematic_closure::ClosureProblem::num_residues(), and protocols::antibody::operator<<().
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Returns the midpoint of the loop.
References increasing(), length(), start(), and stop().
Referenced by protocols::nonlocal::HelixRotate::get_rotation_parameters(), and protocols::kinematic_closure::pivot_pickers::LoopPivots::pick().
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References cut_.
Referenced by protocols::kinematic_closure::pivot_pickers::LoopPivots::pick().
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References start_.
Referenced by protocols::loops::find_non_protein_chunks(), protocols::abinitio::AbrelaxApplication::fold(), protocols::loops::Loops::grow_loop(), protocols::hybridization::FoldTreeHybridize::setup_foldtree(), protocols::loops::split_by_ca_ca_dist(), and protocols::loops::split_by_resSeq().
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Generate a string representation of Loop.
Print the start, stop and cut residues along with the skip rate and the whether or not the loop will be extended.
References cut_, extended_, size(), skip_rate_, start_, and stop_.
Referenced by protocols::loops::operator<<(), and protocols::loops::loop_closure::ccd::CCDLoopClosureMover::show().
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Referenced by protocols::loops::loop_closure::ccd::ShortLoopClosure::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody::H3PerturbCCD::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::antibody_legacy::CDRH3Modeler::build_centroid_loop(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::compute_closure_metrics(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::fragments(), protocols::loops::loop_closure::ccd::LoopClosure::init(), operator<(), operator==(), protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure::sample_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::sample_loops(), protocols::antibody_legacy::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_closure::ccd::LoopClosure::set_cycles(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::set_loop(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), and show().
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References skip_rate_.
Referenced by protocols::loops::Loops::add_overlap_loop().
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References start_.
Referenced by protocols::loops::Loops::add_loop(), protocols::sewing::Assembly::add_loop_segment(), protocols::sewing::LoophashAssemblyMover::add_loophash_segments(), protocols::loops::Loops::add_overlap_loop(), protocols::loops::loop_closure::ccd::ShortLoopClosure::apply(), protocols::nonlocal::SheetTranslate::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody::H3PerturbCCD::apply(), protocols::antibody::RefineOneCDRLoopCentroid::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::loops::loop_closure::ccd::LoopClosure::apply(), protocols::antibody::RefineOneCDRLoop::apply(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::nonlocal::avg_ca_position(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::comparative_modeling::bounded_loops_from_alignment(), protocols::loops::loop_closure::ccd::ShortLoopClosure::catch_fragment(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::CCD_loop_close_sample_omega_recursively(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::CCDLoopClosureMover(), protocols::antibody::CDR_H3_filter_legacy_code_with_old_rule(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::chunks_by_CA_CA_distance(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::close_loop_in_single_direction(), protocols::rigid::RigidBodyMotionMover::compute_bias(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::compute_closure_metrics(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::nonlocal::decompose(), protocols::nonlocal::SheetTranslate::decompose_structure(), protocols::nonlocal::HelixRotate::decompose_structure(), protocols::loop_modeling::samplers::LegacyKicSampler::do_apply(), protocols::star::Extender::extend_unaligned(), protocols::loops::loop_mover::perturb::fast_ccd_close_loops(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::figure_out_movemap(), protocols::forge::methods::fill_non_loop_cst_set(), protocols::kinematic_closure::ClosureProblem::first_residue(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::fix_jump_atoms_at_loop_boundaries(), protocols::abinitio::AbrelaxApplication::fold(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::fragments(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::antibody::AntibodyInfo::get_CDR_length(), protocols::antibody::AntibodyInfo::get_CDR_sequence_with_stem(), protocols::antibody::design::GeneralAntibodyModeler::get_cdrs_movemap_with_overhang(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), protocols::loophash::LoopHashLibrary::graft_loop(), protocols::loops::Loops::grow_loop(), protocols::loops::Loops::grow_loop_away_from_sheets(), protocols::loops::has_severe_pep_bond_geom_issues(), protocols::loops::idealize_loop(), increasing(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::antibody::H3RefineCCD::init(), protocols::loops::loop_closure::ccd::LoopClosure::init(), protocols::loops::Loops::invert(), is_terminal(), protocols::nonlocal::SheetTranslate::is_valid(), protocols::nonlocal::HelixRotate::is_valid(), protocols::nonlocal::HelixRotate::jump_containing_helix(), protocols::nonlocal::SheetTranslate::jump_containing_sheet(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::KIC_loop_close(), protocols::antibody::AntibodyInfo::kink_cation_atoms(), protocols::antibody::AntibodyInfo::kink_cation_residue(), length(), protocols::forge::remodel::RemodelLoopMover::loophash_stage(), protocols::forge::remodel::RemodelLoopMover::mark_loop_moveable(), midpoint(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), protocols::denovo_design::components::StructureData::new_jump_and_cutpoint(), protocols::loops::RationalLoopComparator::operator()(), protocols::loops::Loop_lt::operator()(), operator<(), operator==(), protocols::kinematic_closure::pivot_pickers::EndToEndPivots::pick(), protocols::kinematic_closure::pivot_pickers::FixedOffsetPivots::pick(), protocols::kinematic_closure::pivot_pickers::LoopPivots::pick(), protocols::kinematic_closure::pivot_pickers::StandardPivots::pick(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::forge::remodel::RemodelLoopMover::repeat_sync(), protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure::sample_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::sample_loops(), protocols::antibody_legacy::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_mover::LoopMover::set_extended_torsions(), protocols::loops::set_extended_torsions(), protocols::loops::set_extended_torsions_and_idealize_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::set_loop(), protocols::loops::set_move_map_for_centroid_loop(), protocols::forge::remodel::RemodelLoopMover::set_segment_stage(), protocols::star::setup_constraints(), protocols::medal::setup_coordinate_constraints(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::setup_torsions(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody_legacy::simple_one_loop_fold_tree(), protocols::antibody::simple_one_loop_fold_tree(), switch_movemap(), and protocols::loops::loop_mover::LoopCM::yield_claims().
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References stop_.
Referenced by protocols::loops::Loops::add_loop(), protocols::sewing::Assembly::add_loop_segment(), protocols::loops::Loops::add_overlap_loop(), protocols::nonlocal::SheetTranslate::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody::H3PerturbCCD::apply(), protocols::antibody::RefineOneCDRLoopCentroid::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::loops::loop_closure::ccd::LoopClosure::apply(), protocols::antibody::RefineOneCDRLoop::apply(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::nonlocal::avg_ca_position(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::comparative_modeling::bounded_loops_from_alignment(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::CCD_loop_close_sample_omega_recursively(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::CCDLoopClosureMover(), protocols::antibody::CDR_H3_filter_legacy_code_with_old_rule(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::chunks_by_CA_CA_distance(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::close_loop_in_single_direction(), protocols::rigid::RigidBodyMotionMover::compute_bias(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::compute_closure_metrics(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::nonlocal::decompose(), protocols::nonlocal::SheetTranslate::decompose_structure(), protocols::nonlocal::HelixRotate::decompose_structure(), protocols::antibody::AntibodyInfo::detect_and_set_camelid_CDR_H3_stem_type(), protocols::antibody::AntibodyInfo::detect_and_set_regular_CDR_H3_stem_type(), protocols::antibody::AntibodyInfo::detect_and_set_regular_CDR_H3_stem_type_new_rule(), protocols::loop_modeling::samplers::LegacyKicSampler::do_apply(), protocols::star::Extender::extend_unaligned(), protocols::loops::loop_mover::perturb::fast_ccd_close_loops(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::figure_out_movemap(), protocols::forge::methods::fill_non_loop_cst_set(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::fix_jump_atoms_at_loop_boundaries(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::antibody::AntibodyInfo::get_CDR_length(), protocols::antibody::AntibodyInfo::get_CDR_sequence_with_stem(), protocols::antibody::design::GeneralAntibodyModeler::get_cdrs_movemap_with_overhang(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), protocols::loophash::LoopHashLibrary::graft_loop(), protocols::loops::Loops::grow_loop(), protocols::loops::Loops::grow_loop_away_from_sheets(), protocols::loops::has_severe_pep_bond_geom_issues(), protocols::loops::idealize_loop(), increasing(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::antibody::H3RefineCCD::init(), protocols::loops::loop_closure::ccd::LoopClosure::init(), protocols::loops::Loops::invert(), is_terminal(), protocols::nonlocal::SheetTranslate::is_valid(), protocols::nonlocal::HelixRotate::is_valid(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::KIC_loop_close(), protocols::antibody::AntibodyInfo::kink_anion_atoms(), protocols::antibody::AntibodyInfo::kink_anion_residue(), protocols::antibody::AntibodyInfo::kink_begin(), protocols::antibody::AntibodyInfo::kink_end(), protocols::antibody::AntibodyInfo::kink_trp(), protocols::kinematic_closure::ClosureProblem::last_residue(), length(), protocols::abinitio::abscript::loop_stop_comp(), protocols::forge::remodel::RemodelLoopMover::loophash_stage(), protocols::forge::remodel::RemodelLoopMover::mark_loop_moveable(), midpoint(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), protocols::denovo_design::components::StructureData::new_jump_and_cutpoint(), protocols::loops::Loop_lt::operator()(), protocols::kinematic_closure::pivot_pickers::EndToEndPivots::pick(), protocols::kinematic_closure::pivot_pickers::FixedOffsetPivots::pick(), protocols::kinematic_closure::pivot_pickers::LoopPivots::pick(), protocols::kinematic_closure::pivot_pickers::StandardPivots::pick(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::forge::remodel::RemodelLoopMover::repeat_sync(), protocols::antibody_legacy::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_mover::LoopMover::set_extended_torsions(), protocols::loops::set_extended_torsions(), protocols::loops::set_extended_torsions_and_idealize_loops(), protocols::loops::set_move_map_for_centroid_loop(), protocols::forge::remodel::RemodelLoopMover::set_segment_stage(), protocols::nonlocal::StarTreeBuilder::set_up(), protocols::star::setup_constraints(), protocols::medal::setup_coordinate_constraints(), protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer::setup_torsions(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody_legacy::simple_one_loop_fold_tree(), protocols::antibody::simple_one_loop_fold_tree(), switch_movemap(), protocols::hybridization::HybridizeFoldtreeDynamic::update(), and protocols::loops::loop_mover::LoopCM::yield_claims().
void protocols::loops::Loop::switch_movemap | ( | core::kinematics::MoveMap & | movemap, |
core::id::TorsionType | id, | ||
bool | allow_moves = true |
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switch DOF_Type for residues in loop. id::CHI, id::BB — don't use with id::JUMP
References core::kinematics::MoveMap::set(), start(), and stop().
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Referenced by auto_choose_cutpoint(), choose_cutpoint(), cut(), set_cut(), and show().
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Referenced by is_extended(), set_extended(), and show().
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Referenced by show(), and skip_rate().
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Referenced by choose_cutpoint(), get_residues(), set_start(), show(), size(), and start().
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Referenced by choose_cutpoint(), get_residues(), set_stop(), show(), size(), and stop().