ParsedProtocol.cc File Reference

A mover that applies a protocol parsed from a ROSETTASCRIPTS script. More...

#include <protocols/rosetta_scripts/ParsedProtocol.hh>
#include <protocols/rosetta_scripts/ParsedProtocolCreator.hh>
#include <basic/datacache/DataMapObj.hh>
#include <basic/datacache/DataMap.hh>
#include <core/pose/util.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/filters/BasicFilters.hh>
#include <protocols/moves/ResId.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/moves/NullMover.hh>
#include <protocols/moves/MoverFactory.hh>
#include <protocols/rosetta_scripts/MultiplePoseMover.hh>
#include <basic/Tracer.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <boost/foreach.hpp>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <map>
#include <string>
#include <algorithm>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rosetta_scripts

Macros
#define	foreach   BOOST_FOREACH

Typedefs
typedef core::Real	protocols::rosetta_scripts::Real
typedef core::pose::Pose	protocols::rosetta_scripts::Pose

Functions
static THREAD_LOCAL basic::Tracer	protocols::rosetta_scripts::TR ("protocols.rosetta_scripts.ParsedProtocol")
static THREAD_LOCAL basic::Tracer	protocols::rosetta_scripts::TR_call_order ("protocols.rosetta_scripts.ParsedProtocol_call_order")
static THREAD_LOCAL basic::Tracer	protocols::rosetta_scripts::TR_report ("protocols.rosetta_scripts.ParsedProtocol.REPORT")
std::pair< moves::MoverOP, std::string >	protocols::rosetta_scripts::parse_mover_subtag (utility::tag::TagCOP const tag_ptr, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose)

Detailed Description

A mover that applies a protocol parsed from a ROSETTASCRIPTS script.

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Luki Goldschmidt (lugo@.nosp@m.uw.e.nosp@m.du)

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – Modified this to facilitate use of ParsedProtocols to combine movers and filters in code outside of a RosettaScripts context.

Macro Definition Documentation

#define foreach   BOOST_FOREACH