protocols::stepwise::modeler::movemap Namespace Reference

Functions
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, core::pose::Pose const &pose, utility::vector1< Size > const &working_minimize_res, bool const move_takeoff_torsions)
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, toolbox::AtomLevelDomainMapOP &atom_level_domain_map, core::pose::Pose const &pose, utility::vector1< Size > const &working_fixed_res, utility::vector1< Size > const &working_extra_minimize_res, bool const move_takeoff_torsions)
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, toolbox::AtomLevelDomainMapOP atom_level_domain_map, core::pose::Pose const &pose, utility::vector1< Size > const &working_minimize_res, bool const move_takeoff_torsions)
void	check_move_map_against_working_parameters (core::pose::Pose const &pose, core::kinematics::MoveMapCOP minimize_move_map, working_parameters::StepWiseWorkingParametersCOP working_parameters)
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, core::pose::Pose const &pose, utility::vector1< core::Size > const &working_minimize_res, bool const move_takeoff_torsions=true)
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, toolbox::AtomLevelDomainMapOP &atom_level_domain_map, core::pose::Pose const &pose, utility::vector1< core::Size > const &working_fixed_res, utility::vector1< core::Size > const &working_extra_minimize_res, bool const move_takeoff_torsions=true)
void	figure_out_stepwise_movemap (core::kinematics::MoveMap &mm, toolbox::AtomLevelDomainMapOP atom_level_domain_map, core::pose::Pose const &pose, utility::vector1< core::Size > const &working_minimize_res, bool const move_takeoff_torsions=true)

Function Documentation

void protocols::stepwise::modeler::movemap::check_move_map_against_working_parameters	(	core::pose::Pose const &	pose,
		core::kinematics::MoveMapCOP	minimize_move_map,
		working_parameters::StepWiseWorkingParametersCOP	working_parameters
	)

References core::id::BB, protocols::stepwise::modeler::figure_out_moving_cutpoints_closed(), core::pose::Pose::fold_tree(), protocols::stepwise::modeler::get_domain_boundary_suites(), core::kinematics::FoldTree::get_jump_that_builds_residue(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::is_RNA(), protocols::stepwise::modeler::merge_vectors(), core::pose::Pose::residue_type(), and TR().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		core::pose::Pose const &	pose,
		utility::vector1< core::Size > const &	working_minimize_res,
		bool const	move_takeoff_torsions = true
	)

References figure_out_stepwise_movemap().

Referenced by protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer::apply(), protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer::get_default_movemap(), and protocols::stepwise::modeler::StepWiseMinimizer::get_move_map_and_atom_level_domain_map().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		toolbox::AtomLevelDomainMapOP &	atom_level_domain_map,
		core::pose::Pose const &	pose,
		utility::vector1< core::Size > const &	working_fixed_res,
		utility::vector1< core::Size > const &	working_extra_minimize_res,
		bool const	move_takeoff_torsions = true
	)

References figure_out_stepwise_movemap(), and core::pose::Pose::total_residue().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		toolbox::AtomLevelDomainMapOP	atom_level_domain_map,
		core::pose::Pose const &	pose,
		utility::vector1< core::Size > const &	working_minimize_res,
		bool const	move_takeoff_torsions = true
	)

References core::pose::full_model_info::check_sample_sugar_in_full_model_info(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::chemical::ResidueType::has(), core::chemical::ResidueType::has_variant_type(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::is_RNA(), core::pose::Pose::residue_type(), and core::pose::Pose::total_residue().

Referenced by figure_out_stepwise_movemap().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		core::pose::Pose const &	pose,
		utility::vector1< Size > const &	working_minimize_res,
		bool const	move_takeoff_torsions
	)

References figure_out_stepwise_movemap().

Referenced by protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer::apply(), protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer::get_default_movemap(), and protocols::stepwise::modeler::StepWiseMinimizer::get_move_map_and_atom_level_domain_map().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		toolbox::AtomLevelDomainMapOP &	atom_level_domain_map,
		core::pose::Pose const &	pose,
		utility::vector1< Size > const &	working_fixed_res,
		utility::vector1< Size > const &	working_extra_minimize_res,
		bool const	move_takeoff_torsions
	)

References figure_out_stepwise_movemap(), and core::pose::Pose::total_residue().

void protocols::stepwise::modeler::movemap::figure_out_stepwise_movemap	(	core::kinematics::MoveMap &	mm,
		toolbox::AtomLevelDomainMapOP	atom_level_domain_map,
		core::pose::Pose const &	pose,
		utility::vector1< Size > const &	working_minimize_res,
		bool const	move_takeoff_torsions
	)

References core::pose::full_model_info::check_sample_sugar_in_full_model_info(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::chemical::ResidueType::has(), core::chemical::ResidueType::has_variant_type(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::is_RNA(), core::pose::Pose::residue_type(), and core::pose::Pose::total_residue().

Referenced by figure_out_stepwise_movemap().