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Rosetta
2016.11
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DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below. More...
#include <TaskOperations.hh>
Public Types | |
typedef TaskOperation | parent |
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typedef utility::tag::TagCOP | TagCOP |
typedef basic::datacache::DataMap | DataMap |
typedef pose::Pose | Pose |
Public Member Functions | |
DisallowIfNonnative () | |
DisallowIfNonnative (utility::vector1< bool > disallowed_aas) | |
DisallowIfNonnative (utility::vector1< bool > disallowed_aas, utility::vector1< core::Size > res_selection) | |
virtual | ~DisallowIfNonnative () |
virtual TaskOperationOP | clone () const |
Create another task operation of the type matching the most-derived version of the class. More... | |
virtual void | apply (pose::Pose const &, PackerTask &) const |
Change a packer task in some way. The input pose is the one to which the input task will be later applied. More... | |
void | clear () |
void | disallow_aas (utility::vector1< bool > const &cannonical_disallowed) |
void | disallow_aas (std::string const &aa_string) |
void | restrict_to_residue (core::Size const &resid) |
void | restrict_to_residue (utility::vector1< core::Size > const &residues) |
virtual void | parse_tag (TagCOP, DataMap &) |
Used to parse an xml-like tag to load parameters and properties. More... | |
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virtual | ~TaskOperation () |
Private Member Functions | |
utility::vector1< bool > | invert_vector (utility::vector1< bool > disallowed_aas) |
Private Attributes | |
utility::vector1< core::Size > | residue_selection_ |
utility::vector1< bool > | disallowed_aas_ |
utility::vector1< bool > | allowed_aas_ |
DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below.
core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative | ( | ) |
Referenced by clone().
core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative | ( | utility::vector1< bool > | disallowed_aas | ) |
core::pack::task::operation::DisallowIfNonnative::DisallowIfNonnative | ( | utility::vector1< bool > | disallowed_aas, |
utility::vector1< core::Size > | res_selection | ||
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virtual |
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Change a packer task in some way. The input pose is the one to which the input task will be later applied.
Implements core::pack::task::operation::TaskOperation.
References allowed_aas_, core::pack::task::PackerTask::nonconst_residue_task(), core::chemical::num_canonical_aas, residue_selection_, core::pack::task::ResidueLevelTask::restrict_nonnative_canonical_aas(), and core::pack::task::PackerTask::total_residue().
void core::pack::task::operation::DisallowIfNonnative::clear | ( | ) |
References allowed_aas_, disallowed_aas_, and residue_selection_.
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virtual |
Create another task operation of the type matching the most-derived version of the class.
Implements core::pack::task::operation::TaskOperation.
References DisallowIfNonnative().
void core::pack::task::operation::DisallowIfNonnative::disallow_aas | ( | utility::vector1< bool > const & | cannonical_disallowed | ) |
References allowed_aas_, disallowed_aas_, invert_vector(), and core::chemical::num_canonical_aas.
Referenced by parse_tag().
void core::pack::task::operation::DisallowIfNonnative::disallow_aas | ( | std::string const & | aa_string | ) |
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References disallowed_aas_.
Referenced by disallow_aas().
Used to parse an xml-like tag to load parameters and properties.
Reimplemented from core::pack::task::operation::TaskOperation.
References disallow_aas(), and restrict_to_residue().
void core::pack::task::operation::DisallowIfNonnative::restrict_to_residue | ( | core::Size const & | resid | ) |
References residue_selection_.
Referenced by parse_tag().
void core::pack::task::operation::DisallowIfNonnative::restrict_to_residue | ( | utility::vector1< core::Size > const & | residues | ) |
References residue_selection_.
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Referenced by apply(), clear(), and disallow_aas().
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Referenced by clear(), disallow_aas(), and invert_vector().
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Referenced by apply(), clear(), and restrict_to_residue().