core::pack::task::TaskFactory Class Reference

Factory class for the creation and initialization of PackerTask objects. More...

#include <TaskFactory.hh>

Inheritance diagram for core::pack::task::TaskFactory:

Public Types
typedef utility::pointer::ReferenceCount	parent
typedef operation::TaskOperation	TaskOperation
typedef operation::TaskOperationOP	TaskOperationOP
typedef operation::TaskOperationCOP	TaskOperationCOP
typedef std::list < TaskOperationOP >	OperationList
typedef OperationList::const_iterator	const_iterator

Public Member Functions
	TaskFactory ()
	TaskFactory (TaskFactory const &)
virtual	~TaskFactory ()
TaskFactory &	operator= (TaskFactory const &)
virtual TaskFactoryOP	clone () const
PackerTaskOP	create_task_and_apply_taskoperations (pose::Pose const &pose) const
	Non static version. More...
void	modify_task (core::pose::Pose const &pose, PackerTaskOP task) const
void	push_back (TaskOperationCOP)
	clones the input task, and pushes it back into the list More...
const_iterator	begin () const
	begin iterator of operations_ More...
const_iterator	end () const
	end iterator of operations_ More...
void	clear ()
core::Size	size () const
	return the size of the operations_ list More...

Static Public Member Functions
static PackerTaskOP	create_packer_task (pose::Pose const &)
	Static construction of a task. More...

Private Member Functions
void	copy_operations (TaskFactory const &src)

Private Attributes
OperationList	operations_

Detailed Description

Factory class for the creation and initialization of PackerTask objects.

Member Typedef Documentation

typedef OperationList::const_iterator core::pack::task::TaskFactory::const_iterator

typedef std::list< TaskOperationOP > core::pack::task::TaskFactory::OperationList

typedef utility::pointer::ReferenceCount core::pack::task::TaskFactory::parent

typedef operation::TaskOperation core::pack::task::TaskFactory::TaskOperation

typedef operation::TaskOperationCOP core::pack::task::TaskFactory::TaskOperationCOP

typedef operation::TaskOperationOP core::pack::task::TaskFactory::TaskOperationOP

Constructor & Destructor Documentation

core::pack::task::TaskFactory::TaskFactory

(

)

Referenced by clone().

core::pack::task::TaskFactory::TaskFactory

(

TaskFactory const &

src

)

References copy_operations().

core::pack::task::TaskFactory::~TaskFactory ( )

virtual

Member Function Documentation

TaskFactory::const_iterator core::pack::task::TaskFactory::begin

(

)

const

begin iterator of operations_

References operations_.

Referenced by copy_operations().

void core::pack::task::TaskFactory::clear

(

)

References operations_.

TaskFactoryOP core::pack::task::TaskFactory::clone ( ) const

virtual

References TaskFactory().

void core::pack::task::TaskFactory::copy_operations ( TaskFactory const &  src )

private

References begin(), end(), and operations_.

Referenced by operator=(), and TaskFactory().

PackerTaskOP core::pack::task::TaskFactory::create_packer_task ( pose::Pose const &  pose )

static

Static construction of a task.

Referenced by protocols::protein_interface_design::movers::PlaceOnLoop::add_bb_csts_to_loop(), protocols::enzdes::SecondaryMatchProtocol::add_enz_cst_interaction_to_pose(), protocols::hotspot_hashing::HotspotStubSet::add_hotspot_constraints_to_pose(), protocols::hotspot_hashing::HotspotStubSet::add_hotspot_constraints_to_wholepose(), protocols::protein_interface_design::movers::PlaceOnLoop::ala_pose_loop(), protocols::toolbox::task_operations::StoreCombinedStoredTasksMover::apply(), protocols::simple_moves::ProlineFixMover::apply(), protocols::simple_filters::SAXSScoreFilter::apply(), protocols::abinitio::ResolutionSwitcher::apply(), protocols::protein_interface_design::movers::BestHotspotCstMover::apply(), protocols::metal_interface::ZincHeterodimerMover::apply(), protocols::simple_moves::ModifyVariantTypeMover::apply(), protocols::toolbox::task_operations::StoreCompoundTaskMover::apply(), protocols::protein_interface_design::movers::PlacementAuctionMover::apply(), protocols::simple_moves::symmetry::TaskAwareSymMinMover::apply(), protocols::rbsegment_relax::RBSegmentRelax::apply(), protocols::simple_moves::RepackSidechainsMover::apply(), protocols::protein_interface_design::movers::DisulfideMover::apply(), protocols::hybridization::BackboneTorsionSampler::apply(), protocols::hybridization::BackboneTorsionPerturbation::apply(), protocols::relax::LocalRelax::apply(), protocols::relax::CentroidRelax::apply(), protocols::dna::argrot_dna_dis2(), protocols::relax::FastRelax::batch_apply(), core::pack::rotamer_set::bb_independent_rotamers(), protocols::motifs::Motif::build_rotamers(), protocols::motifs::build_rotamers_lite(), protocols::jumping::ResiduePairJump::build_sidechain_rotamers(), protocols::simple_filters::DdGScan::calculate(), protocols::protein_interface_design::filters::AtomicContactCountFilter::compute(), protocols::hotspot_hashing::HotspotStubSet::create_hotspot_after_pose(), protocols::stepwise::modeler::rna::create_standard_o2prime_pack_task(), protocols::ddG_main(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::generate_csts(), protocols::pockets::PocketGrid::get_connolly_surfacePoints(), protocols::ligand_docking::HighResDocker::make_packer_task_from_vector(), protocols::analysis::InterfaceAnalyzerMover::mut_to_gly(), protocols::motifs::mutate_loops_for_search(), protocols::motifs::mutate_position_vector_for_search(), protocols::frag_picker::FragmentCandidate::output_silent(), core::pack::pack_missing_sidechains(), protocols::hybridization::MRMover::pack_missing_sidechains(), protocols::simple_moves::sidechain_moves::SidechainMCMover::parse_my_tag(), protocols::protein_interface_design::movers::PlaceSimultaneouslyMover::parse_my_tag(), protocols::simple_moves::FindConsensusSequence::parse_resfiles(), protocols::simple_moves::MSDMover::parse_resfiles(), protocols::protein_interface_design::movers::parse_stub_sets(), point_mutation(), protocols::hotspot_hashing::HotspotStubSet::prepare_hashing_packer_task_(), protocols::enzdes::MinimizeStoredRBConfs::rb_minimize_all_confs(), core::util::rebuild_disulfide(), protocols::relax::RangeRelaxMover::repack_all(), protocols::relax::RangeRelaxMover::repack_sequence_window(), protocols::relax::RangeRelaxMover::repack_spherical_range(), protocols::mpi_refinement::WorkUnit_bbGauss::run(), protocols::simple_moves::symmetry::SymPackRotamersMover::setup(), protocols::simple_moves::DesignRepackMover::setup_packer_and_movemap(), protocols::protein_interface_design::movers::TryRotamers::setup_rotamer_set(), protocols::simple_moves::ddG::setup_task(), protocols::hotspot_hashing::SurfaceSearchPattern::SurfaceSearchPattern(), protocols::topology_broker::TopologyBroker::switch_to_fullatom(), core::util::switch_to_residue_type_set(), and protocols::vip::VIP_Mover::try_point_mutants().

PackerTaskOP core::pack::task::TaskFactory::create_task_and_apply_taskoperations

(

pose::Pose const &

pose

)

const

Non static version.

References modify_task().

Referenced by protocols::enzdes::RepackLigandSiteWithoutLigandMover::apply(), and protocols::hotspot_hashing::movers::PlaceProbeMover::create_refinement_packing_task().

TaskFactory::const_iterator core::pack::task::TaskFactory::end

(

)

const

end iterator of operations_

References operations_.

Referenced by copy_operations().

void core::pack::task::TaskFactory::modify_task	(	core::pose::Pose const &	pose,
		PackerTaskOP	task
	)		const

Referenced by create_task_and_apply_taskoperations().

TaskFactory & core::pack::task::TaskFactory::operator=

(

TaskFactory const &

rhs

)

References copy_operations().

void core::pack::task::TaskFactory::push_back

(

TaskOperationCOP

taskop

)

clones the input task, and pushes it back into the list

References operations_.

Referenced by protocols::anchored_design::AnchoredPerturbMover::apply(), protocols::enzdes::RepackLigandSiteWithoutLigandMover::apply(), protocols::anchored_design::AnchoredRefineMover::apply(), protocols::enzdes::EnzdesBaseProtocol::create_enzdes_pack_task(), protocols::hotspot_hashing::movers::PlaceProbeMover::create_refinement_packing_task(), protocols::docking::DockingHighResLegacy::define_loops(), and protocols::match::TaskOperationMPM::modified_match_positions().

core::Size core::pack::task::TaskFactory::size

(

)

const

return the size of the operations_ list

References operations_.

Member Data Documentation

OperationList core::pack::task::TaskFactory::operations_

private

Referenced by begin(), clear(), copy_operations(), end(), push_back(), and size().

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The documentation for this class was generated from the following files:

• src/core/pack/task/TaskFactory.hh
• src/core/pack/task/TaskFactory.cc