simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product) More...

#include <MultipleSigmoidsFilter.hh>

Inheritance diagram for protocols::simple_filters::MultipleSigmoids:

Public Member Functions
	MultipleSigmoids ()

virtual	~MultipleSigmoids ()

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)

core::Real	compute (core::pose::Pose const &pose) const

core::Real	threshold () const

void	threshold (core::Real const t)

OperatorOP	operator_filter () const

void	operator_filter (OperatorOP opt)

SigmoidOP	sigmoid_filter () const

RelativePoseFilterOP	relative_pose_filter () const

void	relative_pose_filter (RelativePoseFilterOP rpose)

void	reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual std::string	name () const

Private Attributes
std::string	file_names_
	allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise More...

core::Real	threshold_

RelativePoseFilterOP	r_pose_

SigmoidOP	sig_

OperatorOP	operatorF_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product)

Constructor & Destructor Documentation

protocols::simple_filters::MultipleSigmoids::MultipleSigmoids ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::MultipleSigmoids::~MultipleSigmoids ( )

virtual

Member Function Documentation

bool protocols::simple_filters::MultipleSigmoids::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold(), and protocols::hybridization::val.

protocols::filters::FilterOP protocols::simple_filters::MultipleSigmoids::clone ( ) const

virtual

Implements protocols::filters::Filter.

References MultipleSigmoids().

core::Real protocols::simple_filters::MultipleSigmoids::compute ( core::pose::Pose const & pose ) const

References operatorF_, protocols::simple_filters::TR(), and protocols::hybridization::val.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::simple_filters::MultipleSigmoids::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References MultipleSigmoids().

OperatorOP protocols::simple_filters::MultipleSigmoids::operator_filter ( ) const

References operatorF_.

void protocols::simple_filters::MultipleSigmoids::operator_filter ( OperatorOP opt )

References operatorF_.

void protocols::simple_filters::MultipleSigmoids::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data,
		filters::Filters_map const &	filters,
		moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)

virtual

Reimplemented from protocols::filters::Filter.

References operatorF_, r_pose_, sig_, threshold(), and protocols::simple_filters::TR().

RelativePoseFilterOP protocols::simple_filters::MultipleSigmoids::relative_pose_filter ( ) const

References r_pose_.

void protocols::simple_filters::MultipleSigmoids::relative_pose_filter ( RelativePoseFilterOP rpose )

References r_pose_.

void protocols::simple_filters::MultipleSigmoids::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::hybridization::val.

core::Real protocols::simple_filters::MultipleSigmoids::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and operatorF_.

void protocols::simple_filters::MultipleSigmoids::reset_baseline	(	core::pose::Pose const &	pose,
		bool const	attempt_read_from_checkpoint
	)

References operatorF_, and protocols::simple_filters::TR().

SigmoidOP protocols::simple_filters::MultipleSigmoids::sigmoid_filter ( ) const

References sig_.

core::Real protocols::simple_filters::MultipleSigmoids::threshold ( ) const

inline

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::MultipleSigmoids::threshold ( core::Real const t )

inline

References protocols::hybridization::t, and threshold_.

Member Data Documentation

std::string protocols::simple_filters::MultipleSigmoids::file_names_

private

allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise

OperatorOP protocols::simple_filters::MultipleSigmoids::operatorF_

private

Referenced by compute(), operator_filter(), parse_my_tag(), report_sm(), and reset_baseline().