Rosetta
2016.11
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prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date More...
#include <NoRepackDisulfides.hh>
Public Types | |
typedef core::pack::task::PackerTask | PackerTask |
typedef core::pack::task::operation::TaskOperationOP | TaskOperationOP |
typedef core::pose::Pose | Pose |
Public Types inherited from core::pack::task::operation::TaskOperation | |
typedef utility::tag::TagCOP | TagCOP |
typedef basic::datacache::DataMap | DataMap |
typedef pose::Pose | Pose |
Public Member Functions | |
NoRepackDisulfides () | |
default constructor More... | |
NoRepackDisulfides (NoRepackDisulfides const &rval) | |
copy constructor More... | |
virtual | ~NoRepackDisulfides () |
default destructor More... | |
virtual TaskOperationOP | clone () const |
clone this object More... | |
virtual void | apply (Pose const &pose, PackerTask &task) const |
apply operations to PackerTask More... | |
Public Member Functions inherited from core::pack::task::operation::TaskOperation | |
virtual | ~TaskOperation () |
virtual void | parse_tag (TagCOP, DataMap &) |
Used to parse an xml-like tag to load parameters and properties. More... | |
Private Types | |
typedef core::pack::task::operation::TaskOperation | Super |
prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date
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private |
typedef core::pack::task::operation::TaskOperationOP core::pack::task::operation::NoRepackDisulfides::TaskOperationOP |
core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides | ( | ) |
default constructor
Referenced by clone().
core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides | ( | NoRepackDisulfides const & | rval | ) |
copy constructor
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virtual |
default destructor
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virtual |
apply operations to PackerTask
Implements core::pack::task::operation::TaskOperation.
References core::chemical::aa_cys, core::conformation::Residue::atom_index(), core::chemical::DISULFIDE, core::chemical::ResidueType::get_disulfide_atom_name(), core::conformation::Residue::has_variant_type(), core::pose::symmetry::is_symmetric(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue(), core::chemical::ResidueType::residue_connection_id_for_atom(), core::conformation::Residue::residue_connection_partner(), core::pose::symmetry::symmetry_info(), core::pose::Pose::total_residue(), and core::conformation::Residue::type().
Referenced by protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::prepack_only(), and protocols::simple_moves::ddG::setup_task().
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virtual |
clone this object
Implements core::pack::task::operation::TaskOperation.
References NoRepackDisulfides().