basic::options::OptionKeys::dna::specificity Namespace Reference

Variables
BooleanOptionKey const	specificity
BooleanOptionKey const	exclude_dna_dna
RealVectorOptionKey const	params
FileVectorOptionKey const	frag_files
BooleanOptionKey const	only_repack
BooleanOptionKey const	design_DNA
BooleanOptionKey const	soft_rep
BooleanOptionKey const	dump_pdbs
BooleanOptionKey const	fast
BooleanOptionKey const	randomize_motif
RealOptionKey const	Wfa_elec
RealOptionKey const	Wdna_bs
RealOptionKey const	Wdna_bp
RealOptionKey const	minimize_tolerance
StringOptionKey const	weights_tag
StringOptionKey const	weights_tag_list
StringOptionKey const	min_type
StringOptionKey const	mode
StringOptionKey const	score_function
BooleanOptionKey const	pre_minimize
BooleanOptionKey const	post_minimize
BooleanOptionKey const	pre_pack
IntegerOptionKey const	nloop
IntegerOptionKey const	n_inner
IntegerOptionKey const	n_outer
IntegerOptionKey const	nstep_water
IntegerOptionKey const	moving_jump
IntegerOptionKey const	motif_begin
IntegerOptionKey const	motif_size
StringVectorOptionKey const	pdb_pos
StringVectorOptionKey const	methylate
RealVectorOptionKey const	dna_backbone_torsion_sdevs
RealOptionKey const	dna_sugar_torsion_sdev
RealOptionKey const	dna_chi_torsion_sdev
StringOptionKey const	lk_ball_wtd_tag
BooleanOptionKey const	lk_ball_for_bb
RealOptionKey const	lk_ball_ramp_width_A2
RealOptionKey const	lk_ball_overlap_gap
RealOptionKey const	lk_ball_overlap_width_A2
RealOptionKey const	lk_ball_water_fade
RealVectorOptionKey const	lk_ball_wtd_prefactors
RealVectorOptionKey const	lk_ball_waters_sp2
RealVectorOptionKey const	lk_ball_waters_sp3
RealVectorOptionKey const	lk_ball_waters_ring
RealOptionKey const	lk_ball_waters_donor
RealOptionKey const	lk_ball_bridge_angle_widthscale

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::design_DNA

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::dna_backbone_torsion_sdevs

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::dna_chi_torsion_sdev

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::dna_sugar_torsion_sdev

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::dump_pdbs

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::exclude_dna_dna

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::fast

Referenced by add_rosetta_options_7(), main(), my_main(), and register_options().

FileVectorOptionKey const basic::options::OptionKeys::dna::specificity::frag_files

Referenced by add_rosetta_options_7(), main(), and my_main().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_bridge_angle_widthscale

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_for_bb

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_overlap_gap

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_overlap_width_A2

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_ramp_width_A2

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_water_fade

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_donor

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_ring

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp2

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_waters_sp3

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_wtd_prefactors

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::lk_ball_wtd_tag

Referenced by add_rosetta_options_7().

StringVectorOptionKey const basic::options::OptionKeys::dna::specificity::methylate

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::min_type

Referenced by add_rosetta_options_7(), Minimize::apply(), NCMinimize::apply(), HDdesignMover::apply(), HbsDesignMover::apply(), PeptoidDesignMover::apply(), OopDesignMover::apply(), DougsDockDesignMinimizeMagicMover::apply(), main(), and HDdesignMover::sym_repack_minimize().

RealOptionKey const basic::options::OptionKeys::dna::specificity::minimize_tolerance

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::mode

Referenced by add_rosetta_options_7(), basic::database::attributes_for_parse_database_connection(), distance(), fmt::File::File(), main(), my_main(), and basic::database::parse_database_connection().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::motif_begin

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::motif_size

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::moving_jump

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::n_inner

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::n_outer

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::nloop

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::dna::specificity::nstep_water

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::only_repack

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::dna::specificity::params

Referenced by add_rosetta_options_7(), binder::bind_constructor(), numeric::interpolation::Histogram< typename, typename >::Histogram(), MC_run(), and thermal_sampler().

StringVectorOptionKey const basic::options::OptionKeys::dna::specificity::pdb_pos

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::post_minimize

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::pre_minimize

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::pre_pack

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::randomize_motif

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::score_function

Referenced by add_rosetta_options_7(), and sequence_tolerance_main().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::soft_rep

Referenced by add_rosetta_options_7(), do_color_by_score(), and main().

BooleanOptionKey const basic::options::OptionKeys::dna::specificity::specificity

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::Wdna_bp

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::Wdna_bs

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::weights_tag

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::dna::specificity::weights_tag_list

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::dna::specificity::Wfa_elec

Referenced by add_rosetta_options_7().