basic::options::OptionKeys::packing Namespace Reference

Namespaces
	ex1
	ex1aro
	ex1aro_exposed
	ex2
	ex2aro
	ex2aro_exposed
	ex3
	ex4
	exdna

Variables
BooleanOptionKey const	packing
BooleanOptionKey const	repack_only
BooleanOptionKey const	prevent_repacking
RealOptionKey const	cenrot_cutoff
BooleanOptionKey const	ignore_ligand_chi
BooleanOptionKey const	quasisymmetry
IntegerOptionKey const	ndruns
BooleanOptionKey const	soft_rep_design
RealOptionKey const	mainchain_h_rebuild_threshold
BooleanOptionKey const	use_electrostatic_repulsion
BooleanOptionKey const	dump_rotamer_sets
RealOptionKey const	dunbrack_prob_buried
RealOptionKey const	dunbrack_prob_nonburied
BooleanOptionKey const	no_optH
BooleanOptionKey const	optH_MCA
BooleanOptionKey const	pack_missing_sidechains
BooleanOptionKey const	preserve_c_beta
BooleanOptionKey const	flip_HNQ
IntegerVectorOptionKey const	fix_his_tautomer
BooleanOptionKey const	print_pymol_selection
IntegerOptionKey const	extrachi_cutoff
FileVectorOptionKey const	resfile
BooleanOptionKey const	sc_branch_rotamers
RealOptionKey const	outeriterations_scaling
RealOptionKey const	inneriterations_scaling
StringVectorOptionKey const	adducts
BooleanOptionKey const	use_input_sc
FileVectorOptionKey const	unboundrot
RealOptionKey const	max_rotbump_energy
BooleanOptionKey const	lazy_ig
BooleanOptionKey const	double_lazy_ig
IntegerOptionKey const	linmem_ig
IntegerOptionKey const	multi_cool_annealer
RealVectorOptionKey const	minpack_temp_schedule
IntegerOptionKey const	minpack_inner_iteration_scale
BooleanOptionKey const	minpack_disable_bumpcheck

Variable Documentation

StringVectorOptionKey const basic::options::OptionKeys::packing::adducts

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::cenrot_cutoff

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::double_lazy_ig

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::dump_rotamer_sets

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::dunbrack_prob_buried

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::dunbrack_prob_nonburied

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::packing::extrachi_cutoff

Referenced by add_rosetta_options_2(), and main().

IntegerVectorOptionKey const basic::options::OptionKeys::packing::fix_his_tautomer

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::flip_HNQ

Referenced by add_rosetta_options_2(), and main().

BooleanOptionKey const basic::options::OptionKeys::packing::ignore_ligand_chi

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::inneriterations_scaling

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::lazy_ig

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::packing::linmem_ig

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::mainchain_h_rebuild_threshold

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::max_rotbump_energy

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::minpack_disable_bumpcheck

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::packing::minpack_inner_iteration_scale

Referenced by add_rosetta_options_2().

RealVectorOptionKey const basic::options::OptionKeys::packing::minpack_temp_schedule

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::packing::multi_cool_annealer

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::packing::ndruns

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::no_optH

Referenced by add_rosetta_options_2(), and main().

BooleanOptionKey const basic::options::OptionKeys::packing::optH_MCA

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::packing::outeriterations_scaling

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::pack_missing_sidechains

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::packing

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::preserve_c_beta

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::prevent_repacking

Referenced by add_rosetta_options_2(), mp_ddG::mutate_residue(), demo.D090_Ala_scan::mutate_residue(), and pyrosetta.toolbox.mutants::restrict_non_nbrs_from_repacking().

BooleanOptionKey const basic::options::OptionKeys::packing::print_pymol_selection

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::quasisymmetry

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::repack_only

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::packing::resfile

Referenced by add_rosetta_options_2(), supercharge::design_supercharge(), supercharge::design_supercharge_AvNAPSA(), UBQ_GTPase_disulfide_Mover::init_on_new_input(), UBQ_E2Mover::init_on_new_input(), main(), register_options(), rna_design_test(), zinc1_homodimer_design::setup_taskfactory(), zinc2_homodimer_design::setup_taskfactory_scorefunction_movers(), and HDdesignMover::task_constraint_setup().

BooleanOptionKey const basic::options::OptionKeys::packing::sc_branch_rotamers

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::soft_rep_design

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::packing::unboundrot

Referenced by add_rosetta_options_2(), and main().

BooleanOptionKey const basic::options::OptionKeys::packing::use_electrostatic_repulsion

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::packing::use_input_sc

Referenced by add_rosetta_options_2(), supercharge::apply(), main(), and register_options().