basic::options::OptionKeys::remodel Namespace Reference

Namespaces
	design
	domainFusion
	RemodelLoopMover
	staged_sampling

Variables
BooleanOptionKey const	remodel
FileOptionKey const	blueprint
FileOptionKey const	cstfile
BooleanOptionKey const	cst_fa_only
IntegerOptionKey const	cstfilter
StringOptionKey const	cen_sfxn
BooleanOptionKey const	check_scored_centroid
IntegerOptionKey const	num_trajectory
IntegerOptionKey const	save_top
BooleanOptionKey const	swap_refine_confirm_protocols
BooleanOptionKey const	bypass_fragments
BooleanOptionKey const	use_same_length_fragments
BooleanOptionKey const	no_jumps
IntegerOptionKey const	reroot_tree
BooleanOptionKey const	use_blueprint_sequence
BooleanOptionKey const	quick_and_dirty
BooleanOptionKey const	checkpoint
BooleanOptionKey const	use_pose_relax
BooleanOptionKey const	use_cart_relax
BooleanOptionKey const	free_relax
StringOptionKey const	generic_aa
RealOptionKey const	cluster_radius
BooleanOptionKey const	use_clusters
BooleanOptionKey const	run_confirmation
BooleanOptionKey const	cluster_on_entire_pose
IntegerOptionKey const	dr_cycles
IntegerOptionKey const	two_chain_tree
IntegerOptionKey const	repeat_structure
IntegerOptionKey const	lh_ex_limit
StringVectorOptionKey const	lh_filter_string
IntegerOptionKey const	lh_cbreak_selection
BooleanOptionKey const	lh_closure_filter
BooleanOptionKey const	cen_minimize
IntegerOptionKey const	core_cutoff
IntegerOptionKey const	boundary_cutoff
StringOptionKey const	coreAA
StringOptionKey const	boundaryAA
StringOptionKey const	surfaceAA
BooleanOptionKey const	design_around_ligand
BooleanOptionKey const	move_ligand
BooleanOptionKey const	resclass_by_sasa
RealOptionKey const	helical_rise
RealOptionKey const	helical_radius
RealOptionKey const	helical_omega
RealVectorOptionKey const	filter_rise
RealVectorOptionKey const	filter_radius
RealVectorOptionKey const	filter_omega
RealOptionKey const	COM_sd
RealOptionKey const	COM_tolerance
RealOptionKey const	vdw
RealOptionKey const	rama
RealOptionKey const	cbeta
RealOptionKey const	cenpack
RealOptionKey const	rg_local
RealOptionKey const	hb_lrbb
RealOptionKey const	hb_srbb
RealOptionKey const	rg
RealOptionKey const	rsigma
RealOptionKey const	ss_pair
BooleanOptionKey const	build_disulf
RealOptionKey const	match_rt_limit
IntegerVectorOptionKey const	disulf_landing_range
BooleanOptionKey const	rank_by_bsasa

Variable Documentation

FileOptionKey const basic::options::OptionKeys::remodel::blueprint

Referenced by add_rosetta_options_12(), and fill_optional_options().

IntegerOptionKey const basic::options::OptionKeys::remodel::boundary_cutoff

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::boundaryAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::build_disulf

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::bypass_fragments

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cbeta

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cen_minimize

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::cen_sfxn

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cenpack

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::check_scored_centroid

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::checkpoint

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cluster_on_entire_pose

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::cluster_radius

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::COM_sd

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::COM_tolerance

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::core_cutoff

Referenced by add_rosetta_options_12(), and measure_sequence_recovery().

StringOptionKey const basic::options::OptionKeys::remodel::coreAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::cst_fa_only

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::remodel::cstfile

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::cstfilter

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::design_around_ligand

Referenced by add_rosetta_options_12().

IntegerVectorOptionKey const basic::options::OptionKeys::remodel::disulf_landing_range

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::dr_cycles

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_omega

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_radius

Referenced by add_rosetta_options_12().

RealVectorOptionKey const basic::options::OptionKeys::remodel::filter_rise

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::free_relax

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::generic_aa

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::hb_lrbb

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::hb_srbb

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_omega

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_radius

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::helical_rise

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_cbreak_selection

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::lh_closure_filter

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::lh_ex_limit

Referenced by add_rosetta_options_12().

StringVectorOptionKey const basic::options::OptionKeys::remodel::lh_filter_string

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::match_rt_limit

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::move_ligand

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::no_jumps

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::num_trajectory

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::quick_and_dirty

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rama

Referenced by add_rosetta_options_12(), calc_rama_scores(), make_scorefxn(), FastRelaxPerformanceBenchmark::setup_for_sc12he(), InteractionGraphPerformanceBenchmark::setup_for_sc12he(), FastRelaxPerformanceBenchmark::setup_for_sc12sp2(), InteractionGraphPerformanceBenchmark::setup_for_sc12sp2(), FastRelaxPerformanceBenchmark::setup_for_score12(), InteractionGraphPerformanceBenchmark::setup_for_score12(), FastRelaxPerformanceBenchmark::setup_for_sp2hecart(), and InteractionGraphPerformanceBenchmark::setup_for_sp2hecart().

BooleanOptionKey const basic::options::OptionKeys::remodel::rank_by_bsasa

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::remodel

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::repeat_structure

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::reroot_tree

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::resclass_by_sasa

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rg

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rg_local

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::rsigma

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::run_confirmation

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::save_top

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::ss_pair

Referenced by add_rosetta_options_12().

StringOptionKey const basic::options::OptionKeys::remodel::surfaceAA

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::swap_refine_confirm_protocols

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::remodel::two_chain_tree

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_blueprint_sequence

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_cart_relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_clusters

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_pose_relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::remodel::use_same_length_fragments

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::remodel::vdw

Referenced by add_rosetta_options_12(), gen_pep_bb_sequential(), and RunPepSpec().