basic::options::OptionKeys::AnchoredDesign Namespace Reference

Namespaces
	akash
	filters
	testing

Variables
BooleanOptionKey const	AnchoredDesign
FileOptionKey const	anchor
BooleanOptionKey const	allow_anchor_repack
BooleanOptionKey const	vary_cutpoints
BooleanOptionKey const	no_frags
BooleanOptionKey const	debug
BooleanOptionKey const	show_extended
BooleanOptionKey const	refine_only
BooleanOptionKey const	perturb_show
IntegerOptionKey const	perturb_cycles
RealOptionKey const	perturb_temp
BooleanOptionKey const	perturb_CCD_off
BooleanOptionKey const	perturb_KIC_off
BooleanOptionKey const	refine_CCD_off
BooleanOptionKey const	refine_KIC_off
IntegerOptionKey const	refine_cycles
RealOptionKey const	refine_temp
IntegerOptionKey const	refine_repack_cycles
BooleanOptionKey const	rmsd
BooleanOptionKey const	unbound_mode
RealOptionKey const	chainbreak_weight

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::allow_anchor_repack

Referenced by add_rosetta_options_5().

FileOptionKey const basic::options::OptionKeys::AnchoredDesign::anchor

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::AnchoredDesign

Referenced by add_rosetta_options_5(), UBQ_GTPase_disulfide_Mover::apply(), and UBQ_E2Mover::apply().

RealOptionKey const basic::options::OptionKeys::AnchoredDesign::chainbreak_weight

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::debug

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::no_frags

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::perturb_CCD_off

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::AnchoredDesign::perturb_cycles

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::perturb_KIC_off

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::perturb_show

Referenced by add_rosetta_options_5().

RealOptionKey const basic::options::OptionKeys::AnchoredDesign::perturb_temp

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_CCD_off

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_cycles

Referenced by add_rosetta_options_5(), UBQ_GTPase_disulfide_Mover::apply(), and UBQ_E2Mover::apply().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_KIC_off

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_only

Referenced by add_rosetta_options_5().

IntegerOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_repack_cycles

Referenced by add_rosetta_options_5(), UBQ_GTPase_disulfide_Mover::apply(), and UBQ_E2Mover::apply().

RealOptionKey const basic::options::OptionKeys::AnchoredDesign::refine_temp

Referenced by add_rosetta_options_5(), UBQ_GTPase_disulfide_Mover::apply(), and UBQ_E2Mover::apply().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::rmsd

Referenced by add_rosetta_options_5(), numeric::alignment::QCPKernel< Real >::calc_coordinate_superposition(), RNA_DeNovoJobQueen::calc_rmsds(), calc_rmsf_and_avrg(), calculate_variations(), check_alignment_RMSD_cutoff(), distance(), drrafter_error_estimation(), full_length_rmsd_over_reside_list_general(), ligand_rmsd(), reavrg(), register_options(), rna_fullatom_minimize_test(), rna_score_test(), and run().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::show_extended

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::unbound_mode

Referenced by add_rosetta_options_5().

BooleanOptionKey const basic::options::OptionKeys::AnchoredDesign::vary_cutpoints

Referenced by add_rosetta_options_5().