basic::options::OptionKeys::lh Namespace Reference

Namespaces
	fragpdb
	symfragrm

Variables
BooleanOptionKey const	lh
IntegerVectorOptionKey const	loopsizes
IntegerOptionKey const	num_partitions
PathOptionKey const	db_path
BooleanOptionKey const	exclude_homo
BooleanOptionKey const	bss
StringOptionKey const	refstruct
StringOptionKey const	homo_file
RealVectorOptionKey const	createdb_rms_cutoff
RealOptionKey const	min_bbrms
RealOptionKey const	max_bbrms
RealOptionKey const	min_rms
RealOptionKey const	max_rms
BooleanOptionKey const	filter_by_phipsi
IntegerOptionKey const	max_radius
IntegerOptionKey const	max_struct
IntegerOptionKey const	max_struct_per_radius
RealOptionKey const	grid_space_multiplier
RealOptionKey const	grid_angle_multiplier
IntegerOptionKey const	skim_size
IntegerOptionKey const	rounds
StringOptionKey const	jobname
IntegerOptionKey const	max_lib_size
IntegerOptionKey const	max_emperor_lib_size
IntegerOptionKey const	max_emperor_lib_round
IntegerOptionKey const	library_expiry_time
StringOptionKey const	objective_function
IntegerOptionKey const	expire_after_rounds
StringOptionKey const	mpi_resume
StringOptionKey const	mpi_feedback
IntegerOptionKey const	mpi_batch_relax_chunks
IntegerOptionKey const	mpi_batch_relax_absolute_max
IntegerOptionKey const	mpi_outbound_wu_buffer_size
IntegerOptionKey const	mpi_loophash_split_size
RealOptionKey const	mpi_metropolis_temp
IntegerOptionKey const	mpi_save_state_interval
BooleanOptionKey const	mpi_master_save_score_only
IntegerOptionKey const	max_loophash_per_structure
RealOptionKey const	prob_terminus_ramapert
RealOptionKey const	rms_limit
RealOptionKey const	similarity_reference
BooleanOptionKey const	centroid_only
BooleanOptionKey const	write_centroid_structs
BooleanOptionKey const	write_all_fa_structs
BooleanOptionKey const	sandbox
BooleanOptionKey const	create_db
FileOptionKey const	sample_weight_file
RealOptionKey const	radius_size
IntegerOptionKey const	max_ref_lib_size
StringVectorOptionKey const	multi_objective_functions
StringVectorOptionKey const	additional_objective_functions
RealOptionKey const	edensity_weight_for_sampling
StringOptionKey const	mpi_master_schfile
IntegerVectorOptionKey const	mpi_master_cpu_weight
StringOptionKey const	mpi_loophash_scan_type
BooleanOptionKey const	mpi_read_structure_for_emperor
BooleanOptionKey const	mpi_packmin_init
IntegerOptionKey const	max_sample_per_structure
StringOptionKey const	loop_string
StringOptionKey const	seg_string
StringVectorOptionKey const	loopresdef
BooleanOptionKey const	pert_init_loop
RealOptionKey const	NMdist
RealVectorOptionKey const	objective_dominate_cut
RealVectorOptionKey const	objective_cut_increment
StringOptionKey const	similarity_method
StringOptionKey const	similarity_measure
RealOptionKey const	similarity_tolerance
RealOptionKey const	parent_selection_kT
StringOptionKey const	sim_replace_obj
RealOptionKey const	ulr_mulfactor
BooleanOptionKey const	filter_up_to_maxlib
BooleanOptionKey const	minimize_after_nmsearch

Variable Documentation

StringVectorOptionKey const basic::options::OptionKeys::lh::additional_objective_functions

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::bss

Referenced by add_rosetta_options_9(), and run_mc().

BooleanOptionKey const basic::options::OptionKeys::lh::centroid_only

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::create_db

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::createdb_rms_cutoff

Referenced by add_rosetta_options_9().

PathOptionKey const basic::options::OptionKeys::lh::db_path

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::edensity_weight_for_sampling

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::exclude_homo

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::expire_after_rounds

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::filter_by_phipsi

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::filter_up_to_maxlib

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::grid_angle_multiplier

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::grid_space_multiplier

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::homo_file

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::jobname

Referenced by add_rosetta_options_9(), and IAMover::assign_IA_mover().

BooleanOptionKey const basic::options::OptionKeys::lh::lh

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::library_expiry_time

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::loop_string

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::lh::loopresdef

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::lh::loopsizes

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::max_bbrms

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_round

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_emperor_lib_size

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_lib_size

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_loophash_per_structure

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_radius

Referenced by add_rosetta_options_9(), and numeric::geometry::hashing::SixDOffsetTree::init().

IntegerOptionKey const basic::options::OptionKeys::lh::max_ref_lib_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::max_rms

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_sample_per_structure

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::max_struct_per_radius

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::min_bbrms

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::min_rms

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::minimize_after_nmsearch

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_absolute_max

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_batch_relax_chunks

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_feedback

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_loophash_scan_type

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_loophash_split_size

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::lh::mpi_master_cpu_weight

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_master_save_score_only

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_master_schfile

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::mpi_metropolis_temp

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_outbound_wu_buffer_size

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_packmin_init

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::mpi_read_structure_for_emperor

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::mpi_resume

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::mpi_save_state_interval

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::lh::multi_objective_functions

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::NMdist

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::num_partitions

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_cut_increment

Referenced by add_rosetta_options_9().

RealVectorOptionKey const basic::options::OptionKeys::lh::objective_dominate_cut

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::objective_function

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::parent_selection_kT

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::pert_init_loop

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::prob_terminus_ramapert

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::radius_size

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::refstruct

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::rms_limit

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::rounds

Referenced by add_rosetta_options_9(), do_erraser2(), fill_input_poses_based_on_possible_checkpoints(), and main().

FileOptionKey const basic::options::OptionKeys::lh::sample_weight_file

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::sandbox

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::seg_string

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::sim_replace_obj

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::similarity_measure

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::lh::similarity_method

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::similarity_reference

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::similarity_tolerance

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::lh::skim_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::lh::ulr_mulfactor

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::write_all_fa_structs

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::lh::write_centroid_structs

Referenced by add_rosetta_options_9().