test.T400_Refinement Namespace Reference

Variables
float	kT = 1.0
int	n_moves = 10
tuple	pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
tuple	pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")
tuple	movemap = MoveMap()
tuple	fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")
tuple	fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")
tuple	mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)
tuple	scorefxn = get_score_function()
tuple	smallmover = protocols.simple_moves.SmallMover(movemap,kT,n_moves)
tuple	shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)
tuple	minmover = protocols.minimization_packing.MinMover()
tuple	mc = MonteCarlo(pose, scorefxn, kT)
tuple	ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)
tuple	seqmover = protocols.moves.SequenceMover()
tuple	trialmover = TrialMover(mover_3mer, mc)

Variable Documentation

tuple test.T400_Refinement.ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)

Referenced by numeric::UniformRotationSampler.generateIcosahedralSamples(), and numeric.proj_angl().

tuple test.T400_Refinement.fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")

tuple test.T400_Refinement.fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")

float test.T400_Refinement.kT = 1.0

tuple test.T400_Refinement.mc = MonteCarlo(pose, scorefxn, kT)

tuple test.T400_Refinement.minmover = protocols.minimization_packing.MinMover()

Referenced by main().

tuple test.T400_Refinement.movemap = MoveMap()

tuple test.T400_Refinement.mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)

int test.T400_Refinement.n_moves = 10

tuple test.T400_Refinement.pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

tuple test.T400_Refinement.pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

tuple test.T400_Refinement.scorefxn = get_score_function()

tuple test.T400_Refinement.seqmover = protocols.moves.SequenceMover()

tuple test.T400_Refinement.shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)

tuple test.T400_Refinement.smallmover = protocols.simple_moves.SmallMover(movemap,kT,n_moves)

tuple test.T400_Refinement.trialmover = TrialMover(mover_3mer, mc)