test.Workshop8test Namespace Reference

Variables
tuple	pose = pose_from_file("../test/data/test_in.pdb")
tuple	ft = FoldTree()
tuple	pmm = PyMOLMover()
tuple	movemap = MoveMap()
tuple	loop1 = protocols.loops.Loop(15, 24, 19)
tuple	ccd = protocols.loops.loop_closure.ccd.CCDLoopClosureMover(loop1, movemap)
tuple	loop2 = protocols.loops.Loop(78, 83, 80)
tuple	loops = protocols.loops.Loops()
tuple	reference_pose = pose_from_file("../test/data/test_in.pdb")
tuple	score = get_score_function()
tuple	output = tempfile.mkstemp()
tuple	jd = PyJobDistributor(output, 1, score)
tuple	lrms = loop_rmsd(pose, reference_pose, loops, True)
tuple	loop_refine = LoopMover_Refine_CCD(loops)
tuple	sw_low = SwitchResidueTypeSetMover("centroid")
tuple	kic_perturb = protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC(loops)
tuple	sw_high = SwitchResidueTypeSetMover("fa_standard")
tuple	kic_refine = protocols.loops.loop_mover.refine.LoopMover_Refine_KIC(loops)
tuple	kic_mover = KinematicMover()

Variable Documentation

tuple test.Workshop8test.ccd = protocols.loops.loop_closure.ccd.CCDLoopClosureMover(loop1, movemap)

Referenced by add_rosetta_options_4().

tuple test.Workshop8test.ft = FoldTree()

tuple test.Workshop8test.jd = PyJobDistributor(output, 1, score)

tuple test.Workshop8test.kic_mover = KinematicMover()

tuple test.Workshop8test.kic_perturb = protocols.loops.loop_mover.perturb.LoopMover_Perturb_KIC(loops)

tuple test.Workshop8test.kic_refine = protocols.loops.loop_mover.refine.LoopMover_Refine_KIC(loops)

tuple test.Workshop8test.loop1 = protocols.loops.Loop(15, 24, 19)

tuple test.Workshop8test.loop2 = protocols.loops.Loop(78, 83, 80)

Referenced by add_rosetta_options_6().

tuple test.Workshop8test.loop_refine = LoopMover_Refine_CCD(loops)

tuple test.Workshop8test.loops = protocols.loops.Loops()

Referenced by add_rosetta_options_3(), add_rosetta_options_6(), APDBCMover.apply(), CaToAllAtom.apply(), get_unaligned(), main(), read_input_weights(), run(), and DougsDockDesignMinimizeMagicMover.setup_pert_foldtree().

tuple test.Workshop8test.lrms = loop_rmsd(pose, reference_pose, loops, True)

tuple test.Workshop8test.movemap = MoveMap()

Referenced by add_rosetta_options_0(), Minimize.apply(), LigandRepackMinimizeProtocol.apply(), compute_folding_energies(), and main().

tuple test.Workshop8test.output = tempfile.mkstemp()

tuple test.Workshop8test.pmm = PyMOLMover()

tuple test.Workshop8test.pose = pose_from_file("../test/data/test_in.pdb")

tuple test.Workshop8test.reference_pose = pose_from_file("../test/data/test_in.pdb")

Referenced by mg_modeler_test().

tuple test.Workshop8test.score = get_score_function()

Referenced by add_rosetta_options_1(), add_rosetta_options_10(), add_rosetta_options_11(), add_rosetta_options_3(), add_rosetta_options_4(), and add_rosetta_options_5().

tuple test.Workshop8test.sw_high = SwitchResidueTypeSetMover("fa_standard")

tuple test.Workshop8test.sw_low = SwitchResidueTypeSetMover("centroid")