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Rosetta
2019.07
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Functions | |
def | sample_dna_interface |
Methods. More... | |
Variables | |
int | counter = 0 |
AddPyMOLObserver(test_pose, True) More... | |
tuple | parser = optparse.OptionParser() |
INTERPRETING RESULTS. More... | |
string | default = '../test/data/dna_test.pdb' |
string | help = 'the PDB file containing the DNA and protein to dock' |
pdb_filename = options.pdb_filename | |
partners = options.partners | |
tuple | jobs = int(options.jobs) |
job_output = options.job_output | |
def demo.D110_DNA_interface.sample_dna_interface | ( | pdb_filename, | |
partners, | |||
jobs = 1 , |
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job_output = 'dna_output' |
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) |
Performs DNA-protein docking using Rosetta fullatom docking (DockingHighRes) on the DNA-protein complex in <pdb_filename> using the relative chain <partners> . <jobs> trajectories are performed with output structures named <job_output>_(job#).pdb.
References pyrosetta.create_score_function, pyrosetta.distributed.io.pose_from_file, and pyrosetta.Vector1().
int demo.D110_DNA_interface.counter = 0 |
AddPyMOLObserver(test_pose, True)
string demo.D110_DNA_interface.default = '../test/data/dna_test.pdb' |
string demo.D110_DNA_interface.help = 'the PDB file containing the DNA and protein to dock' |
demo.D110_DNA_interface.job_output = options.job_output |
tuple demo.D110_DNA_interface.jobs = int(options.jobs) |
tuple demo.D110_DNA_interface.parser = optparse.OptionParser() |
INTERPRETING RESULTS.
COMMANDLINE COMPATIBILITY
demo.D110_DNA_interface.partners = options.partners |
demo.D110_DNA_interface.pdb_filename = options.pdb_filename |